PMC:7045880 / 1381-2380 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7045880","sourcedb":"PMC","sourceid":"7045880","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7045880","text":"Coronavirus is an RNA virus consisting of positive-sense single-stranded RNA of approximately 27–32 kb. Coronavirus belong to the family Coronaviridae, which comprises of alpha, beta, delta, and gamma coronaviruses [1,2]. As the name indicates, the spherical external spike protein displays a characteristic crown shape when observed under an electron microscope [3,4]. The virus is known to infect a wide range of hosts including humans, other mammals, and birds. Infected hosts exhibit different clinical courses, ranging from asymptomatic to severe symptoms in their respiratory, digestive, and genital organs [1,2]. There are 6 known coronaviruses that typically cause infection in humans. Among these, coronavirus 229E, OC43, NL63, and HKU1 generally cause mild cold-like symptoms, whereas severe acute respiratory syndrome-coronavirus (SARS-CoV) in 2003, and Middle East respiratory syndrome-coronavirus (MERS-CoV) in 2012, caused severe respiratory diseases such as pneumonia and death [5,6].","tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"72","span":{"begin":268,"end":273},"obj":"Gene"},{"id":"73","span":{"begin":0,"end":11},"obj":"Species"},{"id":"74","span":{"begin":104,"end":115},"obj":"Species"},{"id":"75","span":{"begin":137,"end":150},"obj":"Species"},{"id":"76","span":{"begin":201,"end":214},"obj":"Species"},{"id":"77","span":{"begin":431,"end":437},"obj":"Species"},{"id":"78","span":{"begin":638,"end":651},"obj":"Species"},{"id":"79","span":{"begin":686,"end":692},"obj":"Species"},{"id":"80","span":{"begin":707,"end":723},"obj":"Species"},{"id":"81","span":{"begin":795,"end":840},"obj":"Species"},{"id":"82","span":{"begin":842,"end":850},"obj":"Species"},{"id":"83","span":{"begin":865,"end":920},"obj":"Species"},{"id":"84","span":{"begin":731,"end":735},"obj":"Species"},{"id":"85","span":{"begin":465,"end":473},"obj":"Disease"},{"id":"86","span":{"begin":673,"end":682},"obj":"Disease"},{"id":"87","span":{"begin":944,"end":964},"obj":"Disease"},{"id":"88","span":{"begin":973,"end":982},"obj":"Disease"},{"id":"89","span":{"begin":987,"end":992},"obj":"Disease"}],"attributes":[{"id":"A72","pred":"tao:has_database_id","subj":"72","obj":"Gene:43740568"},{"id":"A73","pred":"tao:has_database_id","subj":"73","obj":"Tax:11118"},{"id":"A74","pred":"tao:has_database_id","subj":"74","obj":"Tax:11118"},{"id":"A75","pred":"tao:has_database_id","subj":"75","obj":"Tax:11118"},{"id":"A76","pred":"tao:has_database_id","subj":"76","obj":"Tax:11118"},{"id":"A77","pred":"tao:has_database_id","subj":"77","obj":"Tax:9606"},{"id":"A78","pred":"tao:has_database_id","subj":"78","obj":"Tax:11118"},{"id":"A79","pred":"tao:has_database_id","subj":"79","obj":"Tax:9606"},{"id":"A80","pred":"tao:has_database_id","subj":"80","obj":"Tax:11137"},{"id":"A81","pred":"tao:has_database_id","subj":"81","obj":"Tax:694009"},{"id":"A82","pred":"tao:has_database_id","subj":"82","obj":"Tax:694009"},{"id":"A83","pred":"tao:has_database_id","subj":"83","obj":"Tax:1335626"},{"id":"A84","pred":"tao:has_database_id","subj":"84","obj":"Tax:277944"},{"id":"A85","pred":"tao:has_database_id","subj":"85","obj":"MESH:D007239"},{"id":"A86","pred":"tao:has_database_id","subj":"86","obj":"MESH:D007239"},{"id":"A87","pred":"tao:has_database_id","subj":"87","obj":"MESH:D012140"},{"id":"A88","pred":"tao:has_database_id","subj":"88","obj":"MESH:D011014"},{"id":"A89","pred":"tao:has_database_id","subj":"89","obj":"MESH:D003643"},{"subj":"72","pred":"source","obj":"LitCovid-PubTator"},{"subj":"73","pred":"source","obj":"LitCovid-PubTator"},{"subj":"74","pred":"source","obj":"LitCovid-PubTator"},{"subj":"75","pred":"source","obj":"LitCovid-PubTator"},{"subj":"76","pred":"source","obj":"LitCovid-PubTator"},{"subj":"77","pred":"source","obj":"LitCovid-PubTator"},{"subj":"78","pred":"source","obj":"LitCovid-PubTator"},{"subj":"79","pred":"source","obj":"LitCovid-PubTator"},{"subj":"80","pred":"source","obj":"LitCovid-PubTator"},{"subj":"81","pred":"source","obj":"LitCovid-PubTator"},{"subj":"82","pred":"source","obj":"LitCovid-PubTator"},{"subj":"83","pred":"source","obj":"LitCovid-PubTator"},{"subj":"84","pred":"source","obj":"LitCovid-PubTator"},{"subj":"85","pred":"source","obj":"LitCovid-PubTator"},{"subj":"86","pred":"source","obj":"LitCovid-PubTator"},{"subj":"87","pred":"source","obj":"LitCovid-PubTator"},{"subj":"88","pred":"source","obj":"LitCovid-PubTator"},{"subj":"89","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T8","span":{"begin":18,"end":21},"obj":"Body_part"},{"id":"T9","span":{"begin":73,"end":76},"obj":"Body_part"},{"id":"T10","span":{"begin":274,"end":281},"obj":"Body_part"}],"attributes":[{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma67257"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T3","span":{"begin":606,"end":612},"obj":"Body_part"}],"attributes":[{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000062"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T12","span":{"begin":673,"end":682},"obj":"Disease"},{"id":"T13","span":{"begin":795,"end":828},"obj":"Disease"},{"id":"T14","span":{"begin":842,"end":850},"obj":"Disease"},{"id":"T15","span":{"begin":944,"end":964},"obj":"Disease"},{"id":"T16","span":{"begin":973,"end":982},"obj":"Disease"}],"attributes":[{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A13","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A14","pred":"mondo_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A15","pred":"mondo_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/MONDO_0005087"},{"id":"A16","pred":"mondo_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T18","span":{"begin":22,"end":27},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T19","span":{"begin":94,"end":96},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T20","span":{"begin":100,"end":102},"obj":"http://purl.obolibrary.org/obo/CLO_0007074"},{"id":"T21","span":{"begin":100,"end":102},"obj":"http://purl.obolibrary.org/obo/CLO_0051988"},{"id":"T22","span":{"begin":291,"end":292},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T23","span":{"begin":374,"end":379},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T24","span":{"begin":399,"end":400},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T25","span":{"begin":431,"end":437},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T26","span":{"begin":598,"end":612},"obj":"http://purl.obolibrary.org/obo/UBERON_0003133"},{"id":"T27","span":{"begin":686,"end":692},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"}],"attributes":[{"subj":"T18","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T3","span":{"begin":171,"end":176},"obj":"Chemical"},{"id":"T4","span":{"begin":178,"end":182},"obj":"Chemical"},{"id":"T5","span":{"begin":195,"end":200},"obj":"Chemical"},{"id":"T6","span":{"begin":274,"end":281},"obj":"Chemical"},{"id":"T7","span":{"begin":308,"end":313},"obj":"Chemical"},{"id":"T8","span":{"begin":343,"end":351},"obj":"Chemical"}],"attributes":[{"id":"A3","pred":"chebi_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CHEBI_30216"},{"id":"A4","pred":"chebi_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_10545"},{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_30212"},{"id":"A6","pred":"chebi_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_37409"},{"id":"A8","pred":"chebi_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CHEBI_10545"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"2_test","denotations":[{"id":"32149036-30531947-81764444","span":{"begin":216,"end":217},"obj":"30531947"},{"id":"32149036-24737708-81764445","span":{"begin":364,"end":365},"obj":"24737708"},{"id":"32149036-31522710-81764446","span":{"begin":366,"end":367},"obj":"31522710"},{"id":"32149036-30531947-81764447","span":{"begin":614,"end":615},"obj":"30531947"},{"id":"32149036-29551135-81764448","span":{"begin":994,"end":995},"obj":"29551135"},{"id":"32149036-27344959-81764449","span":{"begin":996,"end":997},"obj":"27344959"}],"attributes":[{"subj":"32149036-30531947-81764444","pred":"source","obj":"2_test"},{"subj":"32149036-24737708-81764445","pred":"source","obj":"2_test"},{"subj":"32149036-31522710-81764446","pred":"source","obj":"2_test"},{"subj":"32149036-30531947-81764447","pred":"source","obj":"2_test"},{"subj":"32149036-29551135-81764448","pred":"source","obj":"2_test"},{"subj":"32149036-27344959-81764449","pred":"source","obj":"2_test"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T18","span":{"begin":0,"end":103},"obj":"Sentence"},{"id":"T19","span":{"begin":104,"end":221},"obj":"Sentence"},{"id":"T20","span":{"begin":222,"end":369},"obj":"Sentence"},{"id":"T21","span":{"begin":370,"end":464},"obj":"Sentence"},{"id":"T22","span":{"begin":465,"end":619},"obj":"Sentence"},{"id":"T23","span":{"begin":620,"end":693},"obj":"Sentence"},{"id":"T24","span":{"begin":694,"end":999},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T18","pred":"source","obj":"LitCovid-sentences"},{"subj":"T19","pred":"source","obj":"LitCovid-sentences"},{"subj":"T20","pred":"source","obj":"LitCovid-sentences"},{"subj":"T21","pred":"source","obj":"LitCovid-sentences"},{"subj":"T22","pred":"source","obj":"LitCovid-sentences"},{"subj":"T23","pred":"source","obj":"LitCovid-sentences"},{"subj":"T24","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T5","span":{"begin":973,"end":982},"obj":"Phenotype"}],"attributes":[{"id":"A5","pred":"hp_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-HP"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#ecd993","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#bf93ec"},{"id":"LitCovid-PD-UBERON","color":"#93eca5"},{"id":"LitCovid-PD-MONDO","color":"#ec939b"},{"id":"LitCovid-PD-CLO","color":"#93b5ec"},{"id":"LitCovid-PD-CHEBI","color":"#cfec93"},{"id":"2_test","color":"#ec93e9"},{"id":"LitCovid-sentences","color":"#93ecd5"},{"id":"LitCovid-PD-HP","color":"#ecbb93"}]}]}}