PMC:7045880 / 1368-3164 JSON TXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

LitCovid-PD-FMA-UBERON

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T8","span":{"begin":31,"end":34},"obj":"Body_part"},{"id":"T9","span":{"begin":86,"end":89},"obj":"Body_part"},{"id":"T10","span":{"begin":287,"end":294},"obj":"Body_part"},{"id":"T11","span":{"begin":1599,"end":1605},"obj":"Body_part"},{"id":"T12","span":{"begin":1722,"end":1726},"obj":"Body_part"}],"attributes":[{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A12","pred":"fma_id","subj":"T12","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"Introduction\nCoronavirus is an RNA virus consisting of positive-sense single-stranded RNA of approximately 27–32 kb. Coronavirus belong to the family Coronaviridae, which comprises of alpha, beta, delta, and gamma coronaviruses [1,2]. As the name indicates, the spherical external spike protein displays a characteristic crown shape when observed under an electron microscope [3,4]. The virus is known to infect a wide range of hosts including humans, other mammals, and birds. Infected hosts exhibit different clinical courses, ranging from asymptomatic to severe symptoms in their respiratory, digestive, and genital organs [1,2]. There are 6 known coronaviruses that typically cause infection in humans. Among these, coronavirus 229E, OC43, NL63, and HKU1 generally cause mild cold-like symptoms, whereas severe acute respiratory syndrome-coronavirus (SARS-CoV) in 2003, and Middle East respiratory syndrome-coronavirus (MERS-CoV) in 2012, caused severe respiratory diseases such as pneumonia and death [5,6].\nFollowing the first outbreaks of unexplained pneumonia in Wuhan, China, in late 2019, a new coronavirus was identified as the causative agent in January 2020 [7]. As of February 11th, 2020, a total of 45,000 cases of pneumonia, have been reported from 26 countries, including China. Approximately 96.8% of all cases have been reported in China, and patients in the Hubei province account for 75% of all cases [8–10]. In Korea, the first case was reported on January 20, 2020, when SARS-CoV-2 was detected in a traveler entering Korea from Wuhan, China [11].\nThis study reports the full genome sequencing of SARS-CoV-2 isolated from putative the 2019 novel coronavirus disease (COVID-19) patients in Korea, by cell culture. The isolated SARS-CoV-2 was named BetaCoV/Korea/KCDC03/2020."}

LitCovid-PD-UBERON

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T3","span":{"begin":619,"end":625},"obj":"Body_part"}],"attributes":[{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000062"}],"text":"Introduction\nCoronavirus is an RNA virus consisting of positive-sense single-stranded RNA of approximately 27–32 kb. Coronavirus belong to the family Coronaviridae, which comprises of alpha, beta, delta, and gamma coronaviruses [1,2]. As the name indicates, the spherical external spike protein displays a characteristic crown shape when observed under an electron microscope [3,4]. The virus is known to infect a wide range of hosts including humans, other mammals, and birds. Infected hosts exhibit different clinical courses, ranging from asymptomatic to severe symptoms in their respiratory, digestive, and genital organs [1,2]. There are 6 known coronaviruses that typically cause infection in humans. Among these, coronavirus 229E, OC43, NL63, and HKU1 generally cause mild cold-like symptoms, whereas severe acute respiratory syndrome-coronavirus (SARS-CoV) in 2003, and Middle East respiratory syndrome-coronavirus (MERS-CoV) in 2012, caused severe respiratory diseases such as pneumonia and death [5,6].\nFollowing the first outbreaks of unexplained pneumonia in Wuhan, China, in late 2019, a new coronavirus was identified as the causative agent in January 2020 [7]. As of February 11th, 2020, a total of 45,000 cases of pneumonia, have been reported from 26 countries, including China. Approximately 96.8% of all cases have been reported in China, and patients in the Hubei province account for 75% of all cases [8–10]. In Korea, the first case was reported on January 20, 2020, when SARS-CoV-2 was detected in a traveler entering Korea from Wuhan, China [11].\nThis study reports the full genome sequencing of SARS-CoV-2 isolated from putative the 2019 novel coronavirus disease (COVID-19) patients in Korea, by cell culture. The isolated SARS-CoV-2 was named BetaCoV/Korea/KCDC03/2020."}

LitCovid-PD-MONDO

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T12","span":{"begin":686,"end":695},"obj":"Disease"},{"id":"T13","span":{"begin":808,"end":841},"obj":"Disease"},{"id":"T14","span":{"begin":855,"end":863},"obj":"Disease"},{"id":"T15","span":{"begin":957,"end":977},"obj":"Disease"},{"id":"T16","span":{"begin":986,"end":995},"obj":"Disease"},{"id":"T17","span":{"begin":1058,"end":1067},"obj":"Disease"},{"id":"T18","span":{"begin":1230,"end":1239},"obj":"Disease"},{"id":"T19","span":{"begin":1494,"end":1502},"obj":"Disease"},{"id":"T20","span":{"begin":1620,"end":1628},"obj":"Disease"},{"id":"T21","span":{"begin":1690,"end":1698},"obj":"Disease"},{"id":"T22","span":{"begin":1749,"end":1757},"obj":"Disease"}],"attributes":[{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A13","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A14","pred":"mondo_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A15","pred":"mondo_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/MONDO_0005087"},{"id":"A16","pred":"mondo_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A17","pred":"mondo_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A18","pred":"mondo_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A19","pred":"mondo_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A20","pred":"mondo_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A21","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A22","pred":"mondo_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Introduction\nCoronavirus is an RNA virus consisting of positive-sense single-stranded RNA of approximately 27–32 kb. Coronavirus belong to the family Coronaviridae, which comprises of alpha, beta, delta, and gamma coronaviruses [1,2]. As the name indicates, the spherical external spike protein displays a characteristic crown shape when observed under an electron microscope [3,4]. The virus is known to infect a wide range of hosts including humans, other mammals, and birds. Infected hosts exhibit different clinical courses, ranging from asymptomatic to severe symptoms in their respiratory, digestive, and genital organs [1,2]. There are 6 known coronaviruses that typically cause infection in humans. Among these, coronavirus 229E, OC43, NL63, and HKU1 generally cause mild cold-like symptoms, whereas severe acute respiratory syndrome-coronavirus (SARS-CoV) in 2003, and Middle East respiratory syndrome-coronavirus (MERS-CoV) in 2012, caused severe respiratory diseases such as pneumonia and death [5,6].\nFollowing the first outbreaks of unexplained pneumonia in Wuhan, China, in late 2019, a new coronavirus was identified as the causative agent in January 2020 [7]. As of February 11th, 2020, a total of 45,000 cases of pneumonia, have been reported from 26 countries, including China. Approximately 96.8% of all cases have been reported in China, and patients in the Hubei province account for 75% of all cases [8–10]. In Korea, the first case was reported on January 20, 2020, when SARS-CoV-2 was detected in a traveler entering Korea from Wuhan, China [11].\nThis study reports the full genome sequencing of SARS-CoV-2 isolated from putative the 2019 novel coronavirus disease (COVID-19) patients in Korea, by cell culture. The isolated SARS-CoV-2 was named BetaCoV/Korea/KCDC03/2020."}

LitCovid-PD-CLO

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T18","span":{"begin":35,"end":40},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T19","span":{"begin":107,"end":109},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T20","span":{"begin":113,"end":115},"obj":"http://purl.obolibrary.org/obo/CLO_0007074"},{"id":"T21","span":{"begin":113,"end":115},"obj":"http://purl.obolibrary.org/obo/CLO_0051988"},{"id":"T22","span":{"begin":304,"end":305},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T23","span":{"begin":387,"end":392},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T24","span":{"begin":412,"end":413},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T25","span":{"begin":444,"end":450},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T26","span":{"begin":611,"end":625},"obj":"http://purl.obolibrary.org/obo/UBERON_0003133"},{"id":"T27","span":{"begin":699,"end":705},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T28","span":{"begin":1099,"end":1100},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T29","span":{"begin":1203,"end":1204},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T30","span":{"begin":1521,"end":1522},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T31","span":{"begin":1566,"end":1568},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T32","span":{"begin":1722,"end":1726},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Introduction\nCoronavirus is an RNA virus consisting of positive-sense single-stranded RNA of approximately 27–32 kb. Coronavirus belong to the family Coronaviridae, which comprises of alpha, beta, delta, and gamma coronaviruses [1,2]. As the name indicates, the spherical external spike protein displays a characteristic crown shape when observed under an electron microscope [3,4]. The virus is known to infect a wide range of hosts including humans, other mammals, and birds. Infected hosts exhibit different clinical courses, ranging from asymptomatic to severe symptoms in their respiratory, digestive, and genital organs [1,2]. There are 6 known coronaviruses that typically cause infection in humans. Among these, coronavirus 229E, OC43, NL63, and HKU1 generally cause mild cold-like symptoms, whereas severe acute respiratory syndrome-coronavirus (SARS-CoV) in 2003, and Middle East respiratory syndrome-coronavirus (MERS-CoV) in 2012, caused severe respiratory diseases such as pneumonia and death [5,6].\nFollowing the first outbreaks of unexplained pneumonia in Wuhan, China, in late 2019, a new coronavirus was identified as the causative agent in January 2020 [7]. As of February 11th, 2020, a total of 45,000 cases of pneumonia, have been reported from 26 countries, including China. Approximately 96.8% of all cases have been reported in China, and patients in the Hubei province account for 75% of all cases [8–10]. In Korea, the first case was reported on January 20, 2020, when SARS-CoV-2 was detected in a traveler entering Korea from Wuhan, China [11].\nThis study reports the full genome sequencing of SARS-CoV-2 isolated from putative the 2019 novel coronavirus disease (COVID-19) patients in Korea, by cell culture. The isolated SARS-CoV-2 was named BetaCoV/Korea/KCDC03/2020."}

LitCovid-PD-CHEBI

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T3","span":{"begin":184,"end":189},"obj":"Chemical"},{"id":"T4","span":{"begin":191,"end":195},"obj":"Chemical"},{"id":"T5","span":{"begin":208,"end":213},"obj":"Chemical"},{"id":"T6","span":{"begin":287,"end":294},"obj":"Chemical"},{"id":"T7","span":{"begin":321,"end":326},"obj":"Chemical"},{"id":"T8","span":{"begin":356,"end":364},"obj":"Chemical"}],"attributes":[{"id":"A3","pred":"chebi_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CHEBI_30216"},{"id":"A4","pred":"chebi_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_10545"},{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_30212"},{"id":"A6","pred":"chebi_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_37409"},{"id":"A8","pred":"chebi_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CHEBI_10545"}],"text":"Introduction\nCoronavirus is an RNA virus consisting of positive-sense single-stranded RNA of approximately 27–32 kb. Coronavirus belong to the family Coronaviridae, which comprises of alpha, beta, delta, and gamma coronaviruses [1,2]. As the name indicates, the spherical external spike protein displays a characteristic crown shape when observed under an electron microscope [3,4]. The virus is known to infect a wide range of hosts including humans, other mammals, and birds. Infected hosts exhibit different clinical courses, ranging from asymptomatic to severe symptoms in their respiratory, digestive, and genital organs [1,2]. There are 6 known coronaviruses that typically cause infection in humans. Among these, coronavirus 229E, OC43, NL63, and HKU1 generally cause mild cold-like symptoms, whereas severe acute respiratory syndrome-coronavirus (SARS-CoV) in 2003, and Middle East respiratory syndrome-coronavirus (MERS-CoV) in 2012, caused severe respiratory diseases such as pneumonia and death [5,6].\nFollowing the first outbreaks of unexplained pneumonia in Wuhan, China, in late 2019, a new coronavirus was identified as the causative agent in January 2020 [7]. As of February 11th, 2020, a total of 45,000 cases of pneumonia, have been reported from 26 countries, including China. Approximately 96.8% of all cases have been reported in China, and patients in the Hubei province account for 75% of all cases [8–10]. In Korea, the first case was reported on January 20, 2020, when SARS-CoV-2 was detected in a traveler entering Korea from Wuhan, China [11].\nThis study reports the full genome sequencing of SARS-CoV-2 isolated from putative the 2019 novel coronavirus disease (COVID-19) patients in Korea, by cell culture. The isolated SARS-CoV-2 was named BetaCoV/Korea/KCDC03/2020."}

2_test

{"project":"2_test","denotations":[{"id":"32149036-30531947-81764444","span":{"begin":229,"end":230},"obj":"30531947"},{"id":"32149036-24737708-81764445","span":{"begin":377,"end":378},"obj":"24737708"},{"id":"32149036-31522710-81764446","span":{"begin":379,"end":380},"obj":"31522710"},{"id":"32149036-30531947-81764447","span":{"begin":627,"end":628},"obj":"30531947"},{"id":"32149036-29551135-81764448","span":{"begin":1007,"end":1008},"obj":"29551135"},{"id":"32149036-27344959-81764449","span":{"begin":1009,"end":1010},"obj":"27344959"},{"id":"32149036-32004758-81764450","span":{"begin":1172,"end":1173},"obj":"32004758"},{"id":"32149036-31953166-81764451","span":{"begin":1423,"end":1424},"obj":"31953166"},{"id":"32149036-32035511-81764451","span":{"begin":1423,"end":1424},"obj":"32035511"}],"text":"Introduction\nCoronavirus is an RNA virus consisting of positive-sense single-stranded RNA of approximately 27–32 kb. Coronavirus belong to the family Coronaviridae, which comprises of alpha, beta, delta, and gamma coronaviruses [1,2]. As the name indicates, the spherical external spike protein displays a characteristic crown shape when observed under an electron microscope [3,4]. The virus is known to infect a wide range of hosts including humans, other mammals, and birds. Infected hosts exhibit different clinical courses, ranging from asymptomatic to severe symptoms in their respiratory, digestive, and genital organs [1,2]. There are 6 known coronaviruses that typically cause infection in humans. Among these, coronavirus 229E, OC43, NL63, and HKU1 generally cause mild cold-like symptoms, whereas severe acute respiratory syndrome-coronavirus (SARS-CoV) in 2003, and Middle East respiratory syndrome-coronavirus (MERS-CoV) in 2012, caused severe respiratory diseases such as pneumonia and death [5,6].\nFollowing the first outbreaks of unexplained pneumonia in Wuhan, China, in late 2019, a new coronavirus was identified as the causative agent in January 2020 [7]. As of February 11th, 2020, a total of 45,000 cases of pneumonia, have been reported from 26 countries, including China. Approximately 96.8% of all cases have been reported in China, and patients in the Hubei province account for 75% of all cases [8–10]. In Korea, the first case was reported on January 20, 2020, when SARS-CoV-2 was detected in a traveler entering Korea from Wuhan, China [11].\nThis study reports the full genome sequencing of SARS-CoV-2 isolated from putative the 2019 novel coronavirus disease (COVID-19) patients in Korea, by cell culture. The isolated SARS-CoV-2 was named BetaCoV/Korea/KCDC03/2020."}

LitCovid-sentences

{"project":"LitCovid-sentences","denotations":[{"id":"T17","span":{"begin":0,"end":12},"obj":"Sentence"},{"id":"T18","span":{"begin":13,"end":116},"obj":"Sentence"},{"id":"T19","span":{"begin":117,"end":234},"obj":"Sentence"},{"id":"T20","span":{"begin":235,"end":382},"obj":"Sentence"},{"id":"T21","span":{"begin":383,"end":477},"obj":"Sentence"},{"id":"T22","span":{"begin":478,"end":632},"obj":"Sentence"},{"id":"T23","span":{"begin":633,"end":706},"obj":"Sentence"},{"id":"T24","span":{"begin":707,"end":1012},"obj":"Sentence"},{"id":"T25","span":{"begin":1013,"end":1175},"obj":"Sentence"},{"id":"T26","span":{"begin":1176,"end":1295},"obj":"Sentence"},{"id":"T27","span":{"begin":1296,"end":1429},"obj":"Sentence"},{"id":"T28","span":{"begin":1430,"end":1570},"obj":"Sentence"},{"id":"T29","span":{"begin":1571,"end":1735},"obj":"Sentence"},{"id":"T30","span":{"begin":1736,"end":1796},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Introduction\nCoronavirus is an RNA virus consisting of positive-sense single-stranded RNA of approximately 27–32 kb. Coronavirus belong to the family Coronaviridae, which comprises of alpha, beta, delta, and gamma coronaviruses [1,2]. As the name indicates, the spherical external spike protein displays a characteristic crown shape when observed under an electron microscope [3,4]. The virus is known to infect a wide range of hosts including humans, other mammals, and birds. Infected hosts exhibit different clinical courses, ranging from asymptomatic to severe symptoms in their respiratory, digestive, and genital organs [1,2]. There are 6 known coronaviruses that typically cause infection in humans. Among these, coronavirus 229E, OC43, NL63, and HKU1 generally cause mild cold-like symptoms, whereas severe acute respiratory syndrome-coronavirus (SARS-CoV) in 2003, and Middle East respiratory syndrome-coronavirus (MERS-CoV) in 2012, caused severe respiratory diseases such as pneumonia and death [5,6].\nFollowing the first outbreaks of unexplained pneumonia in Wuhan, China, in late 2019, a new coronavirus was identified as the causative agent in January 2020 [7]. As of February 11th, 2020, a total of 45,000 cases of pneumonia, have been reported from 26 countries, including China. Approximately 96.8% of all cases have been reported in China, and patients in the Hubei province account for 75% of all cases [8–10]. In Korea, the first case was reported on January 20, 2020, when SARS-CoV-2 was detected in a traveler entering Korea from Wuhan, China [11].\nThis study reports the full genome sequencing of SARS-CoV-2 isolated from putative the 2019 novel coronavirus disease (COVID-19) patients in Korea, by cell culture. The isolated SARS-CoV-2 was named BetaCoV/Korea/KCDC03/2020."}

LitCovid-PD-HP

{"project":"LitCovid-PD-HP","denotations":[{"id":"T5","span":{"begin":986,"end":995},"obj":"Phenotype"},{"id":"T6","span":{"begin":1058,"end":1067},"obj":"Phenotype"},{"id":"T7","span":{"begin":1230,"end":1239},"obj":"Phenotype"}],"attributes":[{"id":"A5","pred":"hp_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A6","pred":"hp_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A7","pred":"hp_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/HP_0002090"}],"text":"Introduction\nCoronavirus is an RNA virus consisting of positive-sense single-stranded RNA of approximately 27–32 kb. Coronavirus belong to the family Coronaviridae, which comprises of alpha, beta, delta, and gamma coronaviruses [1,2]. As the name indicates, the spherical external spike protein displays a characteristic crown shape when observed under an electron microscope [3,4]. The virus is known to infect a wide range of hosts including humans, other mammals, and birds. Infected hosts exhibit different clinical courses, ranging from asymptomatic to severe symptoms in their respiratory, digestive, and genital organs [1,2]. There are 6 known coronaviruses that typically cause infection in humans. Among these, coronavirus 229E, OC43, NL63, and HKU1 generally cause mild cold-like symptoms, whereas severe acute respiratory syndrome-coronavirus (SARS-CoV) in 2003, and Middle East respiratory syndrome-coronavirus (MERS-CoV) in 2012, caused severe respiratory diseases such as pneumonia and death [5,6].\nFollowing the first outbreaks of unexplained pneumonia in Wuhan, China, in late 2019, a new coronavirus was identified as the causative agent in January 2020 [7]. As of February 11th, 2020, a total of 45,000 cases of pneumonia, have been reported from 26 countries, including China. Approximately 96.8% of all cases have been reported in China, and patients in the Hubei province account for 75% of all cases [8–10]. In Korea, the first case was reported on January 20, 2020, when SARS-CoV-2 was detected in a traveler entering Korea from Wuhan, China [11].\nThis study reports the full genome sequencing of SARS-CoV-2 isolated from putative the 2019 novel coronavirus disease (COVID-19) patients in Korea, by cell culture. The isolated SARS-CoV-2 was named BetaCoV/Korea/KCDC03/2020."}

PMC:7045880 / 1368-3164 JSONTXT

Annnotations TAB JSON ListView MergeView

PMC:7045880 / 1368-3164 JSON TXT