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PMC:7045880 / 1368-3164 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
72 281-286 Gene denotes spike Gene:43740568
73 13-24 Species denotes Coronavirus Tax:11118
74 117-128 Species denotes Coronavirus Tax:11118
75 150-163 Species denotes Coronaviridae Tax:11118
76 214-227 Species denotes coronaviruses Tax:11118
77 444-450 Species denotes humans Tax:9606
78 651-664 Species denotes coronaviruses Tax:11118
79 699-705 Species denotes humans Tax:9606
80 720-736 Species denotes coronavirus 229E Tax:11137
81 808-853 Species denotes severe acute respiratory syndrome-coronavirus Tax:694009
82 855-863 Species denotes SARS-CoV Tax:694009
83 878-933 Species denotes Middle East respiratory syndrome-coronavirus (MERS-CoV) Tax:1335626
84 744-748 Species denotes NL63 Tax:277944
85 478-486 Disease denotes Infected MESH:D007239
86 686-695 Disease denotes infection MESH:D007239
87 957-977 Disease denotes respiratory diseases MESH:D012140
88 986-995 Disease denotes pneumonia MESH:D011014
89 1000-1005 Disease denotes death MESH:D003643
95 1101-1116 Species denotes new coronavirus Tax:2697049
96 1362-1370 Species denotes patients Tax:9606
97 1494-1504 Species denotes SARS-CoV-2 Tax:2697049
98 1058-1067 Disease denotes pneumonia MESH:D011014
99 1230-1239 Disease denotes pneumonia MESH:D011014
106 1620-1630 Species denotes SARS-CoV-2 Tax:2697049
107 1700-1708 Species denotes patients Tax:9606
108 1749-1759 Species denotes SARS-CoV-2 Tax:2697049
109 1770-1777 Species denotes BetaCoV Tax:694002
110 1658-1688 Disease denotes 2019 novel coronavirus disease MESH:C000657245
111 1690-1698 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T8 31-34 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T9 86-89 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T10 287-294 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T11 1599-1605 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T12 1722-1726 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 619-625 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T12 686-695 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 808-841 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T14 855-863 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 957-977 Disease denotes respiratory diseases http://purl.obolibrary.org/obo/MONDO_0005087
T16 986-995 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T17 1058-1067 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T18 1230-1239 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T19 1494-1502 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 1620-1628 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T21 1690-1698 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 1749-1757 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T18 35-40 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 107-109 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T20 113-115 http://purl.obolibrary.org/obo/CLO_0007074 denotes kb
T21 113-115 http://purl.obolibrary.org/obo/CLO_0051988 denotes kb
T22 304-305 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 387-392 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 412-413 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 444-450 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T26 611-625 http://purl.obolibrary.org/obo/UBERON_0003133 denotes genital organs
T27 699-705 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T28 1099-1100 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1203-1204 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 1521-1522 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 1566-1568 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T32 1722-1726 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 184-189 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T4 191-195 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T5 208-213 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T6 287-294 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T7 321-326 Chemical denotes crown http://purl.obolibrary.org/obo/CHEBI_37409
T8 356-364 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545

2_test

Id Subject Object Predicate Lexical cue
32149036-30531947-81764444 229-230 30531947 denotes 1
32149036-24737708-81764445 377-378 24737708 denotes 3
32149036-31522710-81764446 379-380 31522710 denotes 4
32149036-30531947-81764447 627-628 30531947 denotes 1
32149036-29551135-81764448 1007-1008 29551135 denotes 5
32149036-27344959-81764449 1009-1010 27344959 denotes 6
32149036-32004758-81764450 1172-1173 32004758 denotes 7
32149036-31953166-81764451 1423-1424 31953166 denotes 8
32149036-32035511-81764451 1423-1424 32035511 denotes 8

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T17 0-12 Sentence denotes Introduction
T18 13-116 Sentence denotes Coronavirus is an RNA virus consisting of positive-sense single-stranded RNA of approximately 27–32 kb.
T19 117-234 Sentence denotes Coronavirus belong to the family Coronaviridae, which comprises of alpha, beta, delta, and gamma coronaviruses [1,2].
T20 235-382 Sentence denotes As the name indicates, the spherical external spike protein displays a characteristic crown shape when observed under an electron microscope [3,4].
T21 383-477 Sentence denotes The virus is known to infect a wide range of hosts including humans, other mammals, and birds.
T22 478-632 Sentence denotes Infected hosts exhibit different clinical courses, ranging from asymptomatic to severe symptoms in their respiratory, digestive, and genital organs [1,2].
T23 633-706 Sentence denotes There are 6 known coronaviruses that typically cause infection in humans.
T24 707-1012 Sentence denotes Among these, coronavirus 229E, OC43, NL63, and HKU1 generally cause mild cold-like symptoms, whereas severe acute respiratory syndrome-coronavirus (SARS-CoV) in 2003, and Middle East respiratory syndrome-coronavirus (MERS-CoV) in 2012, caused severe respiratory diseases such as pneumonia and death [5,6].
T25 1013-1175 Sentence denotes Following the first outbreaks of unexplained pneumonia in Wuhan, China, in late 2019, a new coronavirus was identified as the causative agent in January 2020 [7].
T26 1176-1295 Sentence denotes As of February 11th, 2020, a total of 45,000 cases of pneumonia, have been reported from 26 countries, including China.
T27 1296-1429 Sentence denotes Approximately 96.8% of all cases have been reported in China, and patients in the Hubei province account for 75% of all cases [8–10].
T28 1430-1570 Sentence denotes In Korea, the first case was reported on January 20, 2020, when SARS-CoV-2 was detected in a traveler entering Korea from Wuhan, China [11].
T29 1571-1735 Sentence denotes This study reports the full genome sequencing of SARS-CoV-2 isolated from putative the 2019 novel coronavirus disease (COVID-19) patients in Korea, by cell culture.
T30 1736-1796 Sentence denotes The isolated SARS-CoV-2 was named BetaCoV/Korea/KCDC03/2020.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 986-995 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 1058-1067 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 1230-1239 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090