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PMC:7039956 / 6912-8240 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
185 1124-1128 Gene denotes ACE2 Gene:59272
186 1158-1162 Gene denotes ACE2 Gene:59272
187 1220-1224 Gene denotes ACE2 Gene:59272
188 1313-1317 Gene denotes ACE2 Gene:59272
189 1205-1211 Gene denotes Violin
217 159-163 Gene denotes ACE2 Gene:59272
218 360-363 Gene denotes SFN Gene:104444
219 365-370 Gene denotes KRT6A Gene:16687
220 376-381 Gene denotes KRT10 Gene:16661
221 420-423 Gene denotes FAP Gene:14089
222 425-429 Gene denotes PDPN Gene:14726
223 431-437 Gene denotes COL1A2 Gene:12843
224 439-442 Gene denotes DCN Gene:13179
225 444-450 Gene denotes COL3A1 Gene:1281
226 452-458 Gene denotes COL6A1 Gene:1291
227 493-496 Gene denotes CD2 Gene:914
228 498-502 Gene denotes CD3D Gene:915
229 504-508 Gene denotes CD3E Gene:916
230 514-518 Gene denotes CD3G Gene:917
231 557-562 Gene denotes CD163 Gene:9332
232 564-569 Gene denotes CSF1R Gene:1436
233 581-587 Gene denotes FCGR2A Gene:2212
234 625-629 Gene denotes CMA1 Gene:1215
235 631-636 Gene denotes MS4A2 Gene:2206
236 638-644 Gene denotes TPSAB1 Gene:100503895
237 646-651 Gene denotes TPSB2 Gene:17229
238 686-692 Gene denotes SLAMF7 Gene:75345
239 694-699 Gene denotes FCRL5 Gene:329693
240 705-710 Gene denotes CD79A Gene:12518
241 758-764 Gene denotes PECAM1 Gene:18613
242 766-769 Gene denotes VWF Gene:22371
243 775-778 Gene denotes ENG Gene:13805

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T112 7-11 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T113 12-15 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T114 47-54 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T115 126-130 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T116 245-250 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T117 271-275 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T118 319-335 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T119 330-335 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T120 384-395 Body_part denotes fibroblasts http://purl.org/sig/ont/fma/fma63877
T121 463-468 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T122 521-532 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T123 590-600 Body_part denotes mast cells http://purl.org/sig/ont/fma/fma66784
T124 595-600 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T125 656-661 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T126 716-733 Body_part denotes endothelial cells http://purl.org/sig/ont/fma/fma66772
T127 728-733 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T128 801-805 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T129 825-829 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T130 875-879 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T131 880-883 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T132 905-912 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T133 947-951 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T134 981-985 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T135 995-1000 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T136 1045-1049 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T137 1074-1078 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T138 1113-1118 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T139 1253-1257 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T140 1284-1290 Body_part denotes tongue http://purl.org/sig/ont/fma/fma54640
T141 1291-1307 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T142 1302-1307 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T57 1284-1290 Body_part denotes tongue http://purl.obolibrary.org/obo/UBERON_0001723

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T28 420-423 Disease denotes FAP http://purl.obolibrary.org/obo/MONDO_0021055
T29 498-502 Disease denotes CD3D http://purl.obolibrary.org/obo/MONDO_0014280

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T123 7-11 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T124 126-135 http://purl.obolibrary.org/obo/CL_0000000 denotes cell type
T125 238-240 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T126 245-250 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T127 271-281 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T128 304-306 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2a
T129 319-329 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T130 330-335 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T131 344-349 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T132 384-395 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblasts
T133 404-409 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T134 461-468 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T135 477-482 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T136 541-546 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T137 564-569 http://purl.obolibrary.org/obo/PR_000002062 denotes CSF1R
T138 571-575 http://purl.obolibrary.org/obo/PR_000002064 denotes CD68
T139 595-600 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T140 609-614 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T141 654-661 http://purl.obolibrary.org/obo/CL_0000236 denotes B cells
T142 670-675 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T143 716-733 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cells
T144 742-747 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T145 801-805 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T146 825-835 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T147 875-879 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T148 939-940 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 947-957 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T150 981-985 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T151 995-1000 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T152 1032-1033 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T153 1045-1049 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T154 1074-1084 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T155 1113-1118 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T156 1253-1263 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T157 1284-1290 http://purl.obolibrary.org/obo/UBERON_0001723 denotes tongue
T158 1291-1301 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T159 1302-1307 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T13 420-423 Chemical denotes FAP http://purl.obolibrary.org/obo/CHEBI_73617

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T54 0-164 Sentence denotes Single cell RNA-seq was utilized for four oral tissues, and the data was analyzed to confirm the above results and assess the cell type-specific expression of ACE2.
T55 165-780 Sentence denotes After the data preprocessing (shown in section “Materials and methods”), 22 969 cells were acquired and 7 cell types were identified (Fig. 2a), including epithelial cells (marker genes including SFN, KRT6A, and KRT10), fibroblasts (marker genes including FAP, PDPN, COL1A2, DCN, COL3A1, COL6A1), T cells (marker genes including CD2, CD3D, CD3E, and CD3G), macrophages (marker genes including CD163, CSF1R, CD68, and FCGR2A), mast cells (marker genes including CMA1, MS4A2, TPSAB1, TPSB2), B cells (marker genes including SLAMF7, FCRL5, and CD79A) and endothelial cells (marker genes including PECAM1, VWF, and ENG).
T56 781-860 Sentence denotes The heatmap of main cell markers across the cell types can be found in Fig. 2b.
T57 861-1328 Sentence denotes Fig. 2 Single cell RNA-seq analysis of oral tissues from independent dataset. a Seven-cell types were identified by the cell markers; cells were clustered by UMAP method. b Heatmap of cell markers for identifying cell types. c Scatter plots of all the cells with ACE2 expression. d Violin plot of ACE2 expression across different oral sites. e Violin plot of ACE2 expression across different cell types. f Scatter plots of tongue epithelial cells with ACE2 expression