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PMC:7039956 / 4659-6007 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
147 527-531 Gene denotes ACE2 Gene:59272
148 620-624 Gene denotes ACE2 Gene:59272
149 714-718 Gene denotes ACE2 Gene:59272
150 834-838 Gene denotes ACE2 Gene:59272
151 667-671 Gene denotes CAGE Gene:168400
152 546-560 Disease denotes para-carcinoma MESH:D002277
153 733-747 Disease denotes para-carcinoma MESH:D002277
155 1004-1008 Gene denotes ACE2 Gene:59272
158 923-927 Gene denotes ACE2 Gene:59272
159 942-956 Disease denotes para-carcinoma MESH:D002277
165 161-165 Gene denotes ACE2 Gene:59272
166 307-311 Gene denotes ACE2 Gene:59272
167 353-357 Gene denotes ACE2 Gene:59272
168 437-441 Gene denotes CAGE Gene:168400
169 47-61 Disease denotes para-carcinoma MESH:D002277

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T69 69-76 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T70 317-323 Body_part denotes mucosa http://purl.org/sig/ont/fma/fma85355
T71 327-338 Body_part denotes oral cavity http://purl.org/sig/ont/fma/fma20292
T72 412-419 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T73 473-476 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T74 568-575 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T75 646-653 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T76 755-762 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T77 964-971 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T78 1058-1067 Body_part denotes Intestine http://purl.org/sig/ont/fma/fma7199
T79 1082-1088 Body_part denotes Kidney http://purl.org/sig/ont/fma/fma7203
T80 1104-1111 Body_part denotes Stomach http://purl.org/sig/ont/fma/fma7148
T81 1126-1135 Body_part denotes Bile duct http://purl.org/sig/ont/fma/fma9706
T82 1126-1130 Body_part denotes Bile http://purl.org/sig/ont/fma/fma62971
T83 1149-1154 Body_part denotes Liver http://purl.org/sig/ont/fma/fma7197
T84 1169-1180 Body_part denotes Oral cavity http://purl.org/sig/ont/fma/fma20292
T85 1195-1199 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T86 1215-1222 Body_part denotes Thyroid http://purl.org/sig/ont/fma/fma9603
T87 1237-1246 Body_part denotes Esophagus http://purl.org/sig/ont/fma/fma7131
T88 1261-1268 Body_part denotes Bladder http://purl.org/sig/ont/fma/fma15900
T89 1283-1289 Body_part denotes Breast http://purl.org/sig/ont/fma/fma9601
T90 1305-1311 Body_part denotes Uterus http://purl.org/sig/ont/fma/fma17558
T91 1326-1334 Body_part denotes Prostate http://purl.org/sig/ont/fma/fma9600

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T26 26-32 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T27 196-202 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T28 237-243 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T29 317-323 Body_part denotes mucosa http://purl.obolibrary.org/obo/UBERON_0000344
T30 327-338 Body_part denotes oral cavity http://purl.obolibrary.org/obo/UBERON_0000167
T31 598-604 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T32 692-698 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T33 985-991 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T34 1058-1067 Body_part denotes Intestine http://purl.obolibrary.org/obo/UBERON_0000160
T35 1082-1088 Body_part denotes Kidney http://purl.obolibrary.org/obo/UBERON_0002113
T36 1104-1111 Body_part denotes Stomach http://purl.obolibrary.org/obo/UBERON_0000945
T37 1126-1135 Body_part denotes Bile duct http://purl.obolibrary.org/obo/UBERON_0002394
T38 1131-1135 Body_part denotes duct http://purl.obolibrary.org/obo/UBERON_0000058
T39 1149-1154 Body_part denotes Liver http://purl.obolibrary.org/obo/UBERON_0002107
T40 1169-1180 Body_part denotes Oral cavity http://purl.obolibrary.org/obo/UBERON_0000167
T41 1195-1199 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T42 1215-1222 Body_part denotes Thyroid http://purl.obolibrary.org/obo/UBERON_0002046
T43 1237-1246 Body_part denotes Esophagus http://purl.obolibrary.org/obo/UBERON_0001043
T44 1261-1268 Body_part denotes Bladder http://purl.obolibrary.org/obo/UBERON_0001255
T45 1283-1289 Body_part denotes Breast http://purl.obolibrary.org/obo/UBERON_0000310
T46 1305-1311 Body_part denotes Uterus http://purl.obolibrary.org/obo/UBERON_0000995

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T15 52-61 Phenotype denotes carcinoma http://purl.obolibrary.org/obo/HP_0030731
T16 551-560 Phenotype denotes carcinoma http://purl.obolibrary.org/obo/HP_0030731
T17 738-747 Phenotype denotes carcinoma http://purl.obolibrary.org/obo/HP_0030731
T18 947-956 Phenotype denotes carcinoma http://purl.obolibrary.org/obo/HP_0030731

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T24 52-61 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T25 551-560 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T26 738-747 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T27 947-956 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T78 26-32 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T79 196-202 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T80 237-243 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T81 317-323 http://purl.obolibrary.org/obo/UBERON_0000344 denotes mucosa
T82 327-338 http://purl.obolibrary.org/obo/UBERON_0000167 denotes oral cavity
T83 327-338 http://www.ebi.ac.uk/efo/EFO_0000825 denotes oral cavity
T84 510-511 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 598-604 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T86 606-607 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T87 692-698 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T88 985-991 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T89 1058-1067 http://purl.obolibrary.org/obo/UBERON_0000160 denotes Intestine
T90 1058-1067 http://www.ebi.ac.uk/efo/EFO_0000834 denotes Intestine
T91 1082-1088 http://purl.obolibrary.org/obo/UBERON_0002113 denotes Kidney
T92 1082-1088 http://www.ebi.ac.uk/efo/EFO_0000927 denotes Kidney
T93 1082-1088 http://www.ebi.ac.uk/efo/EFO_0000929 denotes Kidney
T94 1112-1114 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T95 1126-1135 http://purl.obolibrary.org/obo/UBERON_0002394 denotes Bile duct
T96 1149-1154 http://purl.obolibrary.org/obo/UBERON_0002107 denotes Liver
T97 1149-1154 http://www.ebi.ac.uk/efo/EFO_0000887 denotes Liver
T98 1169-1180 http://purl.obolibrary.org/obo/UBERON_0000167 denotes Oral cavity
T99 1169-1180 http://www.ebi.ac.uk/efo/EFO_0000825 denotes Oral cavity
T100 1195-1199 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T101 1195-1199 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T102 1237-1246 http://purl.obolibrary.org/obo/UBERON_0001043 denotes Esophagus
T103 1247-1249 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T104 1283-1289 http://purl.obolibrary.org/obo/UBERON_0000310 denotes Breast
T105 1305-1311 http://purl.obolibrary.org/obo/UBERON_0000995 denotes Uterus
T106 1305-1311 http://www.ebi.ac.uk/efo/EFO_0000975 denotes Uterus
T107 1335-1337 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T9 0-2 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T10 1215-1222 Chemical denotes Thyroid http://purl.obolibrary.org/obo/CHEBI_9584

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T31 0-270 Sentence denotes NA-seq profile data of 13 organs including 695 para-carcinoma normal tissues as control from public TCGA were obtained for our analysis, and Fig. 1a showed that ACE2 could be expressed in various organs, the mean expression of different organs could be found in Table 1.
T32 271-460 Sentence denotes According to the mean expression of ACE2, the mucosa of oral cavity could express ACE2, and the results were validated by the data of normal tissues from the FANTOM5 CAGE dataset (Fig. 1b).
T33 461-898 Sentence denotes Fig. 1 Bulk RNA-seq analysis of public datasets. a Violin plot of ACE2 expression in para-carcinoma normal tissues from TCGA, colored by organs. b Bar plot of ACE2 expression in normal tissues from FANTOM5 CAGE dataset, colored by organs. c Bar plot of ACE2 expression of para-carcinoma normal tissues from TCGA in different oral sites, colored by oral sites; d Boxplot of ACE2 in two kinds of oral sites from TCGA, colored by oral sites
T34 899-991 Sentence denotes Table 1 Sample size and ACE2 expression of para-carcinoma normal tissues in different organs
T35 992-1057 Sentence denotes Sample size ACE2 mean expression Standard deviation of expression
T36 1058-1081 Sentence denotes Intestine 51 9.50 1.183
T37 1082-1103 Sentence denotes Kidney 129 9.20 2.410
T38 1104-1125 Sentence denotes Stomach 35 8.25 3.715
T39 1126-1148 Sentence denotes Bile duct 9 7.23 1.163
T40 1149-1168 Sentence denotes Liver 50 6.86 1.351
T41 1169-1194 Sentence denotes Oral cavity 32 6.23 1.271
T42 1195-1214 Sentence denotes Lung 110 5.83 0.710
T43 1215-1236 Sentence denotes Thyroid 59 5.65 0.646
T44 1237-1260 Sentence denotes Esophagus 11 5.31 1.552
T45 1261-1282 Sentence denotes Bladder 19 5.10 1.809
T46 1283-1304 Sentence denotes Breast 113 4.61 0.961
T47 1305-1325 Sentence denotes Uterus 25 4.37 1.125
T48 1326-1348 Sentence denotes Prostate 52 4.35 1.905