PMC:7039956 / 13641-15153 JSON TXT

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LitCovid-PubTator

{"project":"LitCovid-PubTator","denotations":[{"id":"368","span":{"begin":781,"end":785},"obj":"Gene"},{"id":"369","span":{"begin":857,"end":861},"obj":"Gene"},{"id":"370","span":{"begin":62,"end":76},"obj":"Disease"},{"id":"371","span":{"begin":168,"end":174},"obj":"Disease"},{"id":"372","span":{"begin":207,"end":213},"obj":"Disease"},{"id":"373","span":{"begin":233,"end":247},"obj":"Disease"},{"id":"377","span":{"begin":1230,"end":1234},"obj":"Gene"},{"id":"378","span":{"begin":1073,"end":1077},"obj":"Gene"},{"id":"379","span":{"begin":1015,"end":1024},"obj":"Species"}],"attributes":[{"id":"A368","pred":"tao:has_database_id","subj":"368","obj":"Gene:59272"},{"id":"A369","pred":"tao:has_database_id","subj":"369","obj":"Gene:59272"},{"id":"A370","pred":"tao:has_database_id","subj":"370","obj":"MESH:D002277"},{"id":"A371","pred":"tao:has_database_id","subj":"371","obj":"MESH:D009369"},{"id":"A372","pred":"tao:has_database_id","subj":"372","obj":"MESH:D009369"},{"id":"A373","pred":"tao:has_database_id","subj":"373","obj":"MESH:D002277"},{"id":"A377","pred":"tao:has_database_id","subj":"377","obj":"Gene:59272"},{"id":"A378","pred":"tao:has_database_id","subj":"378","obj":"Gene:168400"},{"id":"A379","pred":"tao:has_database_id","subj":"379","obj":"Tax:9606"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Public datasets acquisition and analysis\nBulk RNA-seq data of para-carcinoma normal tissues which were taken as control tissues in the studies were downloaded from The Cancer Genome Atlas (TCGA; https://www.cancer.gov/tcga), and 695 para-carcinoma normal tissues distributed in different organs were obtained for this study, which included intestine (51 tissues), kidney (129 tissues), stomach (35 tissues), bile duct (9 tissues), liver (50 tissues), oral cavity (32 tissues), lung (110 tissues), thyroid (59 tissues), esophagus (11 tissues), bladder (19 tissues), breast (113 tissues), uterus (25 tissues), and prostate (52 tissues). The RNA-seq data were batch effects normalized and log2-transformed for the subsequent analysis. Violin plot was used to show the distribution of ACE2 expression among different organs, t test was performed to compare the ACE2 expression between two different groups shown in boxplot.\nBesides, Bulk RNA-seq data of normal tissues were downloaded from Functional Annotation of The Mammalian Genome Cap Analysis of Gene Expression (FANTOM5 CAGE) dataset25, as only two samples of this dataset which owns 60 samples in total located in the tongue, we just downloaded 14 organ types to validate the ACE2 expression in oral cavity with bar plot, including colon, ovary, breast, cerebellum, epididymis, esophagus, gallbladder, heart muscle, kidney, liver, lung, pancreas, prostate, and tongue.\nAll analyses were performed in R (R version 3.6.0) and significant level was set as 0.05."}

LitCovid-PD-FMA-UBERON

LitCovid-PD-UBERON

LitCovid-PD-HP

{"project":"LitCovid-PD-HP","denotations":[{"id":"T20","span":{"begin":67,"end":76},"obj":"Phenotype"},{"id":"T21","span":{"begin":168,"end":174},"obj":"Phenotype"},{"id":"T22","span":{"begin":238,"end":247},"obj":"Phenotype"}],"attributes":[{"id":"A20","pred":"hp_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/HP_0030731"},{"id":"A21","pred":"hp_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/HP_0002664"},{"id":"A22","pred":"hp_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/HP_0030731"}],"text":"Public datasets acquisition and analysis\nBulk RNA-seq data of para-carcinoma normal tissues which were taken as control tissues in the studies were downloaded from The Cancer Genome Atlas (TCGA; https://www.cancer.gov/tcga), and 695 para-carcinoma normal tissues distributed in different organs were obtained for this study, which included intestine (51 tissues), kidney (129 tissues), stomach (35 tissues), bile duct (9 tissues), liver (50 tissues), oral cavity (32 tissues), lung (110 tissues), thyroid (59 tissues), esophagus (11 tissues), bladder (19 tissues), breast (113 tissues), uterus (25 tissues), and prostate (52 tissues). The RNA-seq data were batch effects normalized and log2-transformed for the subsequent analysis. Violin plot was used to show the distribution of ACE2 expression among different organs, t test was performed to compare the ACE2 expression between two different groups shown in boxplot.\nBesides, Bulk RNA-seq data of normal tissues were downloaded from Functional Annotation of The Mammalian Genome Cap Analysis of Gene Expression (FANTOM5 CAGE) dataset25, as only two samples of this dataset which owns 60 samples in total located in the tongue, we just downloaded 14 organ types to validate the ACE2 expression in oral cavity with bar plot, including colon, ovary, breast, cerebellum, epididymis, esophagus, gallbladder, heart muscle, kidney, liver, lung, pancreas, prostate, and tongue.\nAll analyses were performed in R (R version 3.6.0) and significant level was set as 0.05."}

LitCovid-PD-MONDO

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T42","span":{"begin":67,"end":76},"obj":"Disease"},{"id":"T43","span":{"begin":168,"end":174},"obj":"Disease"},{"id":"T44","span":{"begin":238,"end":247},"obj":"Disease"},{"id":"T45","span":{"begin":1320,"end":1330},"obj":"Disease"},{"id":"T46","span":{"begin":1391,"end":1399},"obj":"Disease"}],"attributes":[{"id":"A42","pred":"mondo_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/MONDO_0004993"},{"id":"A43","pred":"mondo_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/MONDO_0004992"},{"id":"A44","pred":"mondo_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/MONDO_0004993"},{"id":"A45","pred":"mondo_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/MONDO_0004779"},{"id":"A46","pred":"mondo_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/MONDO_0021040"}],"text":"Public datasets acquisition and analysis\nBulk RNA-seq data of para-carcinoma normal tissues which were taken as control tissues in the studies were downloaded from The Cancer Genome Atlas (TCGA; https://www.cancer.gov/tcga), and 695 para-carcinoma normal tissues distributed in different organs were obtained for this study, which included intestine (51 tissues), kidney (129 tissues), stomach (35 tissues), bile duct (9 tissues), liver (50 tissues), oral cavity (32 tissues), lung (110 tissues), thyroid (59 tissues), esophagus (11 tissues), bladder (19 tissues), breast (113 tissues), uterus (25 tissues), and prostate (52 tissues). The RNA-seq data were batch effects normalized and log2-transformed for the subsequent analysis. Violin plot was used to show the distribution of ACE2 expression among different organs, t test was performed to compare the ACE2 expression between two different groups shown in boxplot.\nBesides, Bulk RNA-seq data of normal tissues were downloaded from Functional Annotation of The Mammalian Genome Cap Analysis of Gene Expression (FANTOM5 CAGE) dataset25, as only two samples of this dataset which owns 60 samples in total located in the tongue, we just downloaded 14 organ types to validate the ACE2 expression in oral cavity with bar plot, including colon, ovary, breast, cerebellum, epididymis, esophagus, gallbladder, heart muscle, kidney, liver, lung, pancreas, prostate, and tongue.\nAll analyses were performed in R (R version 3.6.0) and significant level was set as 0.05."}

LitCovid-PD-CLO

LitCovid-PD-GO-BP

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T3","span":{"begin":1048,"end":1063},"obj":"http://purl.obolibrary.org/obo/GO_0010467"}],"text":"Public datasets acquisition and analysis\nBulk RNA-seq data of para-carcinoma normal tissues which were taken as control tissues in the studies were downloaded from The Cancer Genome Atlas (TCGA; https://www.cancer.gov/tcga), and 695 para-carcinoma normal tissues distributed in different organs were obtained for this study, which included intestine (51 tissues), kidney (129 tissues), stomach (35 tissues), bile duct (9 tissues), liver (50 tissues), oral cavity (32 tissues), lung (110 tissues), thyroid (59 tissues), esophagus (11 tissues), bladder (19 tissues), breast (113 tissues), uterus (25 tissues), and prostate (52 tissues). The RNA-seq data were batch effects normalized and log2-transformed for the subsequent analysis. Violin plot was used to show the distribution of ACE2 expression among different organs, t test was performed to compare the ACE2 expression between two different groups shown in boxplot.\nBesides, Bulk RNA-seq data of normal tissues were downloaded from Functional Annotation of The Mammalian Genome Cap Analysis of Gene Expression (FANTOM5 CAGE) dataset25, as only two samples of this dataset which owns 60 samples in total located in the tongue, we just downloaded 14 organ types to validate the ACE2 expression in oral cavity with bar plot, including colon, ovary, breast, cerebellum, epididymis, esophagus, gallbladder, heart muscle, kidney, liver, lung, pancreas, prostate, and tongue.\nAll analyses were performed in R (R version 3.6.0) and significant level was set as 0.05."}

LitCovid-sentences

{"project":"LitCovid-sentences","denotations":[{"id":"T87","span":{"begin":0,"end":40},"obj":"Sentence"},{"id":"T88","span":{"begin":41,"end":634},"obj":"Sentence"},{"id":"T89","span":{"begin":635,"end":731},"obj":"Sentence"},{"id":"T90","span":{"begin":732,"end":919},"obj":"Sentence"},{"id":"T91","span":{"begin":920,"end":1422},"obj":"Sentence"},{"id":"T92","span":{"begin":1423,"end":1512},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Public datasets acquisition and analysis\nBulk RNA-seq data of para-carcinoma normal tissues which were taken as control tissues in the studies were downloaded from The Cancer Genome Atlas (TCGA; https://www.cancer.gov/tcga), and 695 para-carcinoma normal tissues distributed in different organs were obtained for this study, which included intestine (51 tissues), kidney (129 tissues), stomach (35 tissues), bile duct (9 tissues), liver (50 tissues), oral cavity (32 tissues), lung (110 tissues), thyroid (59 tissues), esophagus (11 tissues), bladder (19 tissues), breast (113 tissues), uterus (25 tissues), and prostate (52 tissues). The RNA-seq data were batch effects normalized and log2-transformed for the subsequent analysis. Violin plot was used to show the distribution of ACE2 expression among different organs, t test was performed to compare the ACE2 expression between two different groups shown in boxplot.\nBesides, Bulk RNA-seq data of normal tissues were downloaded from Functional Annotation of The Mammalian Genome Cap Analysis of Gene Expression (FANTOM5 CAGE) dataset25, as only two samples of this dataset which owns 60 samples in total located in the tongue, we just downloaded 14 organ types to validate the ACE2 expression in oral cavity with bar plot, including colon, ovary, breast, cerebellum, epididymis, esophagus, gallbladder, heart muscle, kidney, liver, lung, pancreas, prostate, and tongue.\nAll analyses were performed in R (R version 3.6.0) and significant level was set as 0.05."}

PMC:7039956 / 13641-15153 JSONTXT

Annnotations TAB JSON ListView MergeView

PMC:7039956 / 13641-15153 JSON TXT