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PMC:7039956 / 13641-15153 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
368 781-785 Gene denotes ACE2 Gene:59272
369 857-861 Gene denotes ACE2 Gene:59272
370 62-76 Disease denotes para-carcinoma MESH:D002277
371 168-174 Disease denotes Cancer MESH:D009369
372 207-213 Disease denotes cancer MESH:D009369
373 233-247 Disease denotes para-carcinoma MESH:D002277
377 1230-1234 Gene denotes ACE2 Gene:59272
378 1073-1077 Gene denotes CAGE Gene:168400
379 1015-1024 Species denotes Mammalian Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T227 46-49 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T228 84-91 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T229 120-127 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T230 175-181 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T231 255-262 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T232 340-349 Body_part denotes intestine http://purl.org/sig/ont/fma/fma7199
T233 354-361 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T234 364-370 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T235 376-383 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T236 386-393 Body_part denotes stomach http://purl.org/sig/ont/fma/fma7148
T237 398-405 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T238 408-417 Body_part denotes bile duct http://purl.org/sig/ont/fma/fma9706
T239 421-428 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T240 431-436 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T241 441-448 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T242 451-462 Body_part denotes oral cavity http://purl.org/sig/ont/fma/fma20292
T243 467-474 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T244 477-481 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T245 487-494 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T246 497-504 Body_part denotes thyroid http://purl.org/sig/ont/fma/fma9603
T247 509-516 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T248 519-528 Body_part denotes esophagus http://purl.org/sig/ont/fma/fma7131
T249 533-540 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T250 543-550 Body_part denotes bladder http://purl.org/sig/ont/fma/fma15900
T251 555-562 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T252 565-571 Body_part denotes breast http://purl.org/sig/ont/fma/fma9601
T253 577-584 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T254 587-593 Body_part denotes uterus http://purl.org/sig/ont/fma/fma17558
T255 598-605 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T256 612-620 Body_part denotes prostate http://purl.org/sig/ont/fma/fma9600
T257 625-632 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T258 639-642 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T259 934-937 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T260 957-964 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T261 1025-1031 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T262 1048-1052 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T263 1172-1178 Body_part denotes tongue http://purl.org/sig/ont/fma/fma54640
T264 1202-1207 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T265 1249-1260 Body_part denotes oral cavity http://purl.org/sig/ont/fma/fma20292
T266 1286-1291 Body_part denotes colon http://purl.org/sig/ont/fma/fma14543
T267 1293-1298 Body_part denotes ovary http://purl.org/sig/ont/fma/fma7209
T268 1300-1306 Body_part denotes breast http://purl.org/sig/ont/fma/fma9601
T269 1308-1318 Body_part denotes cerebellum http://purl.org/sig/ont/fma/fma67944
T270 1320-1330 Body_part denotes epididymis http://purl.org/sig/ont/fma/fma18255
T271 1332-1341 Body_part denotes esophagus http://purl.org/sig/ont/fma/fma7131
T272 1343-1354 Body_part denotes gallbladder http://purl.org/sig/ont/fma/fma7202
T273 1356-1368 Body_part denotes heart muscle http://purl.org/sig/ont/fma/fma9462
T274 1370-1376 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T275 1378-1383 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T276 1385-1389 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T277 1391-1399 Body_part denotes pancreas http://purl.org/sig/ont/fma/fma7198
T278 1401-1409 Body_part denotes prostate http://purl.org/sig/ont/fma/fma9600
T279 1415-1421 Body_part denotes tongue http://purl.org/sig/ont/fma/fma54640

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T89 288-294 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T90 340-349 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T91 364-370 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T92 386-393 Body_part denotes stomach http://purl.obolibrary.org/obo/UBERON_0000945
T93 408-417 Body_part denotes bile duct http://purl.obolibrary.org/obo/UBERON_0002394
T94 408-412 Body_part denotes bile http://purl.obolibrary.org/obo/UBERON_0001970
T95 413-417 Body_part denotes duct http://purl.obolibrary.org/obo/UBERON_0000058
T96 431-436 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T97 451-462 Body_part denotes oral cavity http://purl.obolibrary.org/obo/UBERON_0000167
T98 477-481 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T99 497-504 Body_part denotes thyroid http://purl.obolibrary.org/obo/UBERON_0002046
T100 519-528 Body_part denotes esophagus http://purl.obolibrary.org/obo/UBERON_0001043
T101 543-550 Body_part denotes bladder http://purl.obolibrary.org/obo/UBERON_0001255
T102 565-571 Body_part denotes breast http://purl.obolibrary.org/obo/UBERON_0000310
T103 587-593 Body_part denotes uterus http://purl.obolibrary.org/obo/UBERON_0000995
T104 813-819 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T105 1172-1178 Body_part denotes tongue http://purl.obolibrary.org/obo/UBERON_0001723
T106 1202-1207 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T107 1249-1260 Body_part denotes oral cavity http://purl.obolibrary.org/obo/UBERON_0000167
T108 1286-1291 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T109 1300-1306 Body_part denotes breast http://purl.obolibrary.org/obo/UBERON_0000310
T110 1308-1318 Body_part denotes cerebellum http://purl.obolibrary.org/obo/UBERON_0002037
T111 1320-1330 Body_part denotes epididymis http://purl.obolibrary.org/obo/UBERON_0001301
T112 1332-1341 Body_part denotes esophagus http://purl.obolibrary.org/obo/UBERON_0001043
T113 1356-1361 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T114 1370-1376 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T115 1378-1383 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T116 1385-1389 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T117 1391-1399 Body_part denotes pancreas http://purl.obolibrary.org/obo/UBERON_0001264
T118 1415-1421 Body_part denotes tongue http://purl.obolibrary.org/obo/UBERON_0001723

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T20 67-76 Phenotype denotes carcinoma http://purl.obolibrary.org/obo/HP_0030731
T21 168-174 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T22 238-247 Phenotype denotes carcinoma http://purl.obolibrary.org/obo/HP_0030731

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T42 67-76 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T43 168-174 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T44 238-247 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T45 1320-1330 Disease denotes epididymis http://purl.obolibrary.org/obo/MONDO_0004779
T46 1391-1399 Disease denotes pancreas http://purl.obolibrary.org/obo/MONDO_0021040

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T249 288-294 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T250 340-349 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestine
T251 340-349 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestine
T252 364-370 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T253 364-370 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T254 364-370 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T255 395-397 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T256 408-417 http://purl.obolibrary.org/obo/UBERON_0002394 denotes bile duct
T257 431-436 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T258 431-436 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T259 451-462 http://purl.obolibrary.org/obo/UBERON_0000167 denotes oral cavity
T260 451-462 http://www.ebi.ac.uk/efo/EFO_0000825 denotes oral cavity
T261 477-481 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T262 477-481 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T263 519-528 http://purl.obolibrary.org/obo/UBERON_0001043 denotes esophagus
T264 530-532 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T265 565-571 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
T266 587-593 http://purl.obolibrary.org/obo/UBERON_0000995 denotes uterus
T267 587-593 http://www.ebi.ac.uk/efo/EFO_0000975 denotes uterus
T268 622-624 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T269 813-819 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T270 823-831 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test was
T271 1048-1052 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T272 1172-1178 http://purl.obolibrary.org/obo/UBERON_0001723 denotes tongue
T273 1202-1207 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T274 1249-1260 http://purl.obolibrary.org/obo/UBERON_0000167 denotes oral cavity
T275 1249-1260 http://www.ebi.ac.uk/efo/EFO_0000825 denotes oral cavity
T276 1286-1291 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
T277 1293-1298 http://www.ebi.ac.uk/efo/EFO_0000973 denotes ovary
T278 1300-1306 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
T279 1308-1318 http://purl.obolibrary.org/obo/UBERON_0002037 denotes cerebellum
T280 1332-1341 http://purl.obolibrary.org/obo/UBERON_0001043 denotes esophagus
T281 1356-1361 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T282 1356-1361 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T283 1356-1361 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T284 1356-1361 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T285 1362-1368 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T286 1362-1368 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T287 1362-1368 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T288 1362-1368 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T289 1370-1376 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T290 1370-1376 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T291 1370-1376 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T292 1378-1383 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T293 1378-1383 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T294 1385-1389 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T295 1385-1389 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T296 1391-1399 http://purl.obolibrary.org/obo/UBERON_0001264 denotes pancreas
T297 1415-1421 http://purl.obolibrary.org/obo/UBERON_0001723 denotes tongue

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 1048-1063 http://purl.obolibrary.org/obo/GO_0010467 denotes Gene Expression

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T87 0-40 Sentence denotes Public datasets acquisition and analysis
T88 41-634 Sentence denotes Bulk RNA-seq data of para-carcinoma normal tissues which were taken as control tissues in the studies were downloaded from The Cancer Genome Atlas (TCGA; https://www.cancer.gov/tcga), and 695 para-carcinoma normal tissues distributed in different organs were obtained for this study, which included intestine (51 tissues), kidney (129 tissues), stomach (35 tissues), bile duct (9 tissues), liver (50 tissues), oral cavity (32 tissues), lung (110 tissues), thyroid (59 tissues), esophagus (11 tissues), bladder (19 tissues), breast (113 tissues), uterus (25 tissues), and prostate (52 tissues).
T89 635-731 Sentence denotes The RNA-seq data were batch effects normalized and log2-transformed for the subsequent analysis.
T90 732-919 Sentence denotes Violin plot was used to show the distribution of ACE2 expression among different organs, t test was performed to compare the ACE2 expression between two different groups shown in boxplot.
T91 920-1422 Sentence denotes Besides, Bulk RNA-seq data of normal tissues were downloaded from Functional Annotation of The Mammalian Genome Cap Analysis of Gene Expression (FANTOM5 CAGE) dataset25, as only two samples of this dataset which owns 60 samples in total located in the tongue, we just downloaded 14 organ types to validate the ACE2 expression in oral cavity with bar plot, including colon, ovary, breast, cerebellum, epididymis, esophagus, gallbladder, heart muscle, kidney, liver, lung, pancreas, prostate, and tongue.
T92 1423-1512 Sentence denotes All analyses were performed in R (R version 3.6.0) and significant level was set as 0.05.