PMC:7036342 / 9170-9880 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"210","span":{"begin":604,"end":642},"obj":"Species"},{"id":"196","span":{"begin":223,"end":229},"obj":"Gene"},{"id":"197","span":{"begin":309,"end":313},"obj":"Gene"},{"id":"198","span":{"begin":353,"end":359},"obj":"Gene"},{"id":"199","span":{"begin":396,"end":402},"obj":"Gene"},{"id":"200","span":{"begin":479,"end":484},"obj":"Gene"},{"id":"201","span":{"begin":522,"end":527},"obj":"Gene"},{"id":"202","span":{"begin":266,"end":272},"obj":"Gene"},{"id":"203","span":{"begin":440,"end":441},"obj":"Gene"},{"id":"206","span":{"begin":44,"end":51},"obj":"Species"},{"id":"207","span":{"begin":118,"end":128},"obj":"Species"},{"id":"211","span":{"begin":645,"end":656},"obj":"Species"}],"attributes":[{"id":"A196","pred":"tao:has_database_id","subj":"196","obj":"Gene:43740578"},{"id":"A197","pred":"tao:has_database_id","subj":"197","obj":"Gene:55354"},{"id":"A198","pred":"tao:has_database_id","subj":"198","obj":"Gene:43740578"},{"id":"A199","pred":"tao:has_database_id","subj":"199","obj":"Gene:43740578"},{"id":"A200","pred":"tao:has_database_id","subj":"200","obj":"Gene:43740569"},{"id":"A201","pred":"tao:has_database_id","subj":"201","obj":"Gene:43740569"},{"id":"A202","pred":"tao:has_database_id","subj":"202","obj":"Gene:43740578"},{"id":"A203","pred":"tao:has_database_id","subj":"203","obj":"Gene:43740568"},{"id":"A206","pred":"tao:has_database_id","subj":"206","obj":"Tax:694002"},{"id":"A207","pred":"tao:has_database_id","subj":"207","obj":"Tax:2697049"},{"id":"A210","pred":"tao:has_database_id","subj":"210","obj":"Tax:694009"},{"id":"A211","pred":"tao:has_database_id","subj":"211","obj":"Tax:11118"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 1 Genetic variations of our isolate (BetaCoV/Korea/SNU01/2020) compared to the NC_045512 reference genome of a SARS-CoV-2 isolated in Wuhan\nPosition Gene Ref Alt Ref AA Alt AA Total depth Ref, % Alt, %\n2971 ORF1ab G T Met Ile 7917 31 69\n6031 ORF1ab C T Asn Asn 7966 5 95\n12115 ORF1ab C T Ser Ser 7875 33 67\n15597 ORF1ab T C Tyr Tyr 7977 4 96\n20936 ORF1ab C T Thr Met 7984 31 69\n22224 S C G Ser Trp 7993 33 67\n25775 ORF3a G T Trp Leu 7995 32 68\n26144 ORF3a G T Gly Val 7885 0 100\n26354 E T A Leu His 7609 36 64\nSARS = severe acute respiratory syndrome, CoV = coronavirus, Ref = reference, Alt = alternative, AA = amino acid."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T58","span":{"begin":106,"end":112},"obj":"Body_part"},{"id":"T59","span":{"begin":157,"end":161},"obj":"Body_part"},{"id":"T60","span":{"begin":699,"end":709},"obj":"Body_part"}],"attributes":[{"id":"A58","pred":"fma_id","subj":"T58","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A59","pred":"fma_id","subj":"T59","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A60","pred":"fma_id","subj":"T60","obj":"http://purl.org/sig/ont/fma/fma82739"}],"text":"Table 1 Genetic variations of our isolate (BetaCoV/Korea/SNU01/2020) compared to the NC_045512 reference genome of a SARS-CoV-2 isolated in Wuhan\nPosition Gene Ref Alt Ref AA Alt AA Total depth Ref, % Alt, %\n2971 ORF1ab G T Met Ile 7917 31 69\n6031 ORF1ab C T Asn Asn 7966 5 95\n12115 ORF1ab C T Ser Ser 7875 33 67\n15597 ORF1ab T C Tyr Tyr 7977 4 96\n20936 ORF1ab C T Thr Met 7984 31 69\n22224 S C G Ser Trp 7993 33 67\n25775 ORF3a G T Trp Leu 7995 32 68\n26144 ORF3a G T Gly Val 7885 0 100\n26354 E T A Leu His 7609 36 64\nSARS = severe acute respiratory syndrome, CoV = coronavirus, Ref = reference, Alt = alternative, AA = amino acid."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T62","span":{"begin":118,"end":126},"obj":"Disease"},{"id":"T63","span":{"begin":118,"end":122},"obj":"Disease"},{"id":"T64","span":{"begin":597,"end":601},"obj":"Disease"},{"id":"T65","span":{"begin":604,"end":637},"obj":"Disease"}],"attributes":[{"id":"A62","pred":"mondo_id","subj":"T62","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A63","pred":"mondo_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A64","pred":"mondo_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A65","pred":"mondo_id","subj":"T65","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Table 1 Genetic variations of our isolate (BetaCoV/Korea/SNU01/2020) compared to the NC_045512 reference genome of a SARS-CoV-2 isolated in Wuhan\nPosition Gene Ref Alt Ref AA Alt AA Total depth Ref, % Alt, %\n2971 ORF1ab G T Met Ile 7917 31 69\n6031 ORF1ab C T Asn Asn 7966 5 95\n12115 ORF1ab C T Ser Ser 7875 33 67\n15597 ORF1ab T C Tyr Tyr 7977 4 96\n20936 ORF1ab C T Thr Met 7984 31 69\n22224 S C G Ser Trp 7993 33 67\n25775 ORF3a G T Trp Leu 7995 32 68\n26144 ORF3a G T Gly Val 7885 0 100\n26354 E T A Leu His 7609 36 64\nSARS = severe acute respiratory syndrome, CoV = coronavirus, Ref = reference, Alt = alternative, AA = amino acid."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T95","span":{"begin":116,"end":117},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T96","span":{"begin":157,"end":161},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T97","span":{"begin":177,"end":179},"obj":"http://purl.obolibrary.org/obo/CLO_0001627"},{"id":"T98","span":{"begin":185,"end":187},"obj":"http://purl.obolibrary.org/obo/CLO_0001627"},{"id":"T99","span":{"begin":440,"end":444},"obj":"http://purl.obolibrary.org/obo/CLO_0008954"},{"id":"T100","span":{"begin":540,"end":543},"obj":"http://purl.obolibrary.org/obo/CLO_0037067"},{"id":"T101","span":{"begin":571,"end":572},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T102","span":{"begin":590,"end":592},"obj":"http://purl.obolibrary.org/obo/CLO_0001313"},{"id":"T103","span":{"begin":694,"end":696},"obj":"http://purl.obolibrary.org/obo/CLO_0001627"}],"text":"Table 1 Genetic variations of our isolate (BetaCoV/Korea/SNU01/2020) compared to the NC_045512 reference genome of a SARS-CoV-2 isolated in Wuhan\nPosition Gene Ref Alt Ref AA Alt AA Total depth Ref, % Alt, %\n2971 ORF1ab G T Met Ile 7917 31 69\n6031 ORF1ab C T Asn Asn 7966 5 95\n12115 ORF1ab C T Ser Ser 7875 33 67\n15597 ORF1ab T C Tyr Tyr 7977 4 96\n20936 ORF1ab C T Thr Met 7984 31 69\n22224 S C G Ser Trp 7993 33 67\n25775 ORF3a G T Trp Leu 7995 32 68\n26144 ORF3a G T Gly Val 7885 0 100\n26354 E T A Leu His 7609 36 64\nSARS = severe acute respiratory syndrome, CoV = coronavirus, Ref = reference, Alt = alternative, AA = amino acid."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T51","span":{"begin":168,"end":171},"obj":"Chemical"},{"id":"T52","span":{"begin":177,"end":179},"obj":"Chemical"},{"id":"T54","span":{"begin":181,"end":184},"obj":"Chemical"},{"id":"T55","span":{"begin":185,"end":187},"obj":"Chemical"},{"id":"T57","span":{"begin":210,"end":213},"obj":"Chemical"},{"id":"T58","span":{"begin":237,"end":240},"obj":"Chemical"},{"id":"T61","span":{"begin":242,"end":245},"obj":"Chemical"},{"id":"T63","span":{"begin":280,"end":283},"obj":"Chemical"},{"id":"T66","span":{"begin":285,"end":288},"obj":"Chemical"},{"id":"T69","span":{"begin":323,"end":326},"obj":"Chemical"},{"id":"T71","span":{"begin":328,"end":331},"obj":"Chemical"},{"id":"T73","span":{"begin":367,"end":370},"obj":"Chemical"},{"id":"T76","span":{"begin":372,"end":375},"obj":"Chemical"},{"id":"T79","span":{"begin":410,"end":413},"obj":"Chemical"},{"id":"T81","span":{"begin":415,"end":418},"obj":"Chemical"},{"id":"T84","span":{"begin":449,"end":452},"obj":"Chemical"},{"id":"T86","span":{"begin":454,"end":457},"obj":"Chemical"},{"id":"T89","span":{"begin":492,"end":495},"obj":"Chemical"},{"id":"T92","span":{"begin":497,"end":500},"obj":"Chemical"},{"id":"T95","span":{"begin":535,"end":538},"obj":"Chemical"},{"id":"T96","span":{"begin":540,"end":543},"obj":"Chemical"},{"id":"T98","span":{"begin":574,"end":577},"obj":"Chemical"},{"id":"T101","span":{"begin":675,"end":678},"obj":"Chemical"},{"id":"T102","span":{"begin":694,"end":696},"obj":"Chemical"},{"id":"T104","span":{"begin":699,"end":709},"obj":"Chemical"},{"id":"T105","span":{"begin":699,"end":704},"obj":"Chemical"},{"id":"T106","span":{"begin":705,"end":709},"obj":"Chemical"}],"attributes":[{"id":"A51","pred":"chebi_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/CHEBI_37708"},{"id":"A52","pred":"chebi_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/CHEBI_15843"},{"id":"A53","pred":"chebi_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/CHEBI_72816"},{"id":"A54","pred":"chebi_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/CHEBI_37708"},{"id":"A55","pred":"chebi_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/CHEBI_15843"},{"id":"A56","pred":"chebi_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/CHEBI_72816"},{"id":"A57","pred":"chebi_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/CHEBI_37708"},{"id":"A58","pred":"chebi_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/CHEBI_16044"},{"id":"A59","pred":"chebi_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/CHEBI_16643"},{"id":"A60","pred":"chebi_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/CHEBI_16811"},{"id":"A61","pred":"chebi_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/CHEBI_17191"},{"id":"A62","pred":"chebi_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/CHEBI_30009"},{"id":"A63","pred":"chebi_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/CHEBI_17196"},{"id":"A64","pred":"chebi_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/CHEBI_22653"},{"id":"A65","pred":"chebi_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/CHEBI_50347"},{"id":"A66","pred":"chebi_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/CHEBI_17196"},{"id":"A67","pred":"chebi_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/CHEBI_22653"},{"id":"A68","pred":"chebi_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/CHEBI_50347"},{"id":"A69","pred":"chebi_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/CHEBI_17115"},{"id":"A70","pred":"chebi_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/CHEBI_29999"},{"id":"A71","pred":"chebi_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/CHEBI_17115"},{"id":"A72","pred":"chebi_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/CHEBI_29999"},{"id":"A73","pred":"chebi_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/CHEBI_17895"},{"id":"A74","pred":"chebi_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/CHEBI_18186"},{"id":"A75","pred":"chebi_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/CHEBI_46858"},{"id":"A76","pred":"chebi_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/CHEBI_17895"},{"id":"A77","pred":"chebi_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/CHEBI_18186"},{"id":"A78","pred":"chebi_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/CHEBI_46858"},{"id":"A79","pred":"chebi_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/CHEBI_16857"},{"id":"A80","pred":"chebi_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/CHEBI_30013"},{"id":"A81","pred":"chebi_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/CHEBI_16044"},{"id":"A82","pred":"chebi_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/CHEBI_16643"},{"id":"A83","pred":"chebi_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/CHEBI_16811"},{"id":"A84","pred":"chebi_id","subj":"T84","obj":"http://purl.obolibrary.org/obo/CHEBI_17115"},{"id":"A85","pred":"chebi_id","subj":"T84","obj":"http://purl.obolibrary.org/obo/CHEBI_29999"},{"id":"A86","pred":"chebi_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/CHEBI_16828"},{"id":"A87","pred":"chebi_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/CHEBI_27897"},{"id":"A88","pred":"chebi_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/CHEBI_29954"},{"id":"A89","pred":"chebi_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/CHEBI_16828"},{"id":"A90","pred":"chebi_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/CHEBI_27897"},{"id":"A91","pred":"chebi_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/CHEBI_29954"},{"id":"A92","pred":"chebi_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/CHEBI_15603"},{"id":"A93","pred":"chebi_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/CHEBI_25017"},{"id":"A94","pred":"chebi_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/CHEBI_30006"},{"id":"A95","pred":"chebi_id","subj":"T95","obj":"http://purl.obolibrary.org/obo/CHEBI_15428"},{"id":"A96","pred":"chebi_id","subj":"T96","obj":"http://purl.obolibrary.org/obo/CHEBI_16414"},{"id":"A97","pred":"chebi_id","subj":"T96","obj":"http://purl.obolibrary.org/obo/CHEBI_30015"},{"id":"A98","pred":"chebi_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/CHEBI_15603"},{"id":"A99","pred":"chebi_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/CHEBI_25017"},{"id":"A100","pred":"chebi_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/CHEBI_30006"},{"id":"A101","pred":"chebi_id","subj":"T101","obj":"http://purl.obolibrary.org/obo/CHEBI_37708"},{"id":"A102","pred":"chebi_id","subj":"T102","obj":"http://purl.obolibrary.org/obo/CHEBI_15843"},{"id":"A103","pred":"chebi_id","subj":"T102","obj":"http://purl.obolibrary.org/obo/CHEBI_72816"},{"id":"A104","pred":"chebi_id","subj":"T104","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A105","pred":"chebi_id","subj":"T105","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A106","pred":"chebi_id","subj":"T106","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"}],"text":"Table 1 Genetic variations of our isolate (BetaCoV/Korea/SNU01/2020) compared to the NC_045512 reference genome of a SARS-CoV-2 isolated in Wuhan\nPosition Gene Ref Alt Ref AA Alt AA Total depth Ref, % Alt, %\n2971 ORF1ab G T Met Ile 7917 31 69\n6031 ORF1ab C T Asn Asn 7966 5 95\n12115 ORF1ab C T Ser Ser 7875 33 67\n15597 ORF1ab T C Tyr Tyr 7977 4 96\n20936 ORF1ab C T Thr Met 7984 31 69\n22224 S C G Ser Trp 7993 33 67\n25775 ORF3a G T Trp Leu 7995 32 68\n26144 ORF3a G T Gly Val 7885 0 100\n26354 E T A Leu His 7609 36 64\nSARS = severe acute respiratory syndrome, CoV = coronavirus, Ref = reference, Alt = alternative, AA = amino acid."}

{"project":"LitCovid-sentences","denotations":[{"id":"T67","span":{"begin":0,"end":146},"obj":"Sentence"},{"id":"T68","span":{"begin":147,"end":216},"obj":"Sentence"},{"id":"T69","span":{"begin":217,"end":259},"obj":"Sentence"},{"id":"T70","span":{"begin":260,"end":301},"obj":"Sentence"},{"id":"T71","span":{"begin":302,"end":345},"obj":"Sentence"},{"id":"T72","span":{"begin":346,"end":388},"obj":"Sentence"},{"id":"T73","span":{"begin":389,"end":432},"obj":"Sentence"},{"id":"T74","span":{"begin":433,"end":471},"obj":"Sentence"},{"id":"T75","span":{"begin":472,"end":514},"obj":"Sentence"},{"id":"T76","span":{"begin":515,"end":557},"obj":"Sentence"},{"id":"T77","span":{"begin":558,"end":596},"obj":"Sentence"},{"id":"T78","span":{"begin":597,"end":710},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 1 Genetic variations of our isolate (BetaCoV/Korea/SNU01/2020) compared to the NC_045512 reference genome of a SARS-CoV-2 isolated in Wuhan\nPosition Gene Ref Alt Ref AA Alt AA Total depth Ref, % Alt, %\n2971 ORF1ab G T Met Ile 7917 31 69\n6031 ORF1ab C T Asn Asn 7966 5 95\n12115 ORF1ab C T Ser Ser 7875 33 67\n15597 ORF1ab T C Tyr Tyr 7977 4 96\n20936 ORF1ab C T Thr Met 7984 31 69\n22224 S C G Ser Trp 7993 33 67\n25775 ORF3a G T Trp Leu 7995 32 68\n26144 ORF3a G T Gly Val 7885 0 100\n26354 E T A Leu His 7609 36 64\nSARS = severe acute respiratory syndrome, CoV = coronavirus, Ref = reference, Alt = alternative, AA = amino acid."}