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PMC:7036342 / 9170-9880 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
210 604-642 Species denotes severe acute respiratory syndrome, CoV Tax:694009
196 223-229 Gene denotes ORF1ab Gene:43740578
197 309-313 Gene denotes ORF1 Gene:55354
198 353-359 Gene denotes ORF1ab Gene:43740578
199 396-402 Gene denotes ORF1ab Gene:43740578
200 479-484 Gene denotes ORF3a Gene:43740569
201 522-527 Gene denotes ORF3a Gene:43740569
202 266-272 Gene denotes ORF1ab Gene:43740578
203 440-441 Gene denotes S Gene:43740568
206 44-51 Species denotes BetaCoV Tax:694002
207 118-128 Species denotes SARS-CoV-2 Tax:2697049
211 645-656 Species denotes coronavirus Tax:11118

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T58 106-112 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T59 157-161 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T60 699-709 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T62 118-126 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T63 118-122 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T64 597-601 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T65 604-637 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T95 116-117 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 157-161 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T97 177-179 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T98 185-187 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T99 440-444 http://purl.obolibrary.org/obo/CLO_0008954 denotes S C
T100 540-543 http://purl.obolibrary.org/obo/CLO_0037067 denotes Val
T101 571-572 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T102 590-592 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T103 694-696 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T51 168-171 Chemical denotes Alt http://purl.obolibrary.org/obo/CHEBI_37708
T52 177-179 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T54 181-184 Chemical denotes Alt http://purl.obolibrary.org/obo/CHEBI_37708
T55 185-187 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T57 210-213 Chemical denotes Alt http://purl.obolibrary.org/obo/CHEBI_37708
T58 237-240 Chemical denotes Met http://purl.obolibrary.org/obo/CHEBI_16044|http://purl.obolibrary.org/obo/CHEBI_16643|http://purl.obolibrary.org/obo/CHEBI_16811
T61 242-245 Chemical denotes Ile http://purl.obolibrary.org/obo/CHEBI_17191|http://purl.obolibrary.org/obo/CHEBI_30009
T63 280-283 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T66 285-288 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T69 323-326 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T71 328-331 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T73 367-370 Chemical denotes Tyr http://purl.obolibrary.org/obo/CHEBI_17895|http://purl.obolibrary.org/obo/CHEBI_18186|http://purl.obolibrary.org/obo/CHEBI_46858
T76 372-375 Chemical denotes Tyr http://purl.obolibrary.org/obo/CHEBI_17895|http://purl.obolibrary.org/obo/CHEBI_18186|http://purl.obolibrary.org/obo/CHEBI_46858
T79 410-413 Chemical denotes Thr http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013
T81 415-418 Chemical denotes Met http://purl.obolibrary.org/obo/CHEBI_16044|http://purl.obolibrary.org/obo/CHEBI_16643|http://purl.obolibrary.org/obo/CHEBI_16811
T84 449-452 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T86 454-457 Chemical denotes Trp http://purl.obolibrary.org/obo/CHEBI_16828|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_29954
T89 492-495 Chemical denotes Trp http://purl.obolibrary.org/obo/CHEBI_16828|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_29954
T92 497-500 Chemical denotes Leu http://purl.obolibrary.org/obo/CHEBI_15603|http://purl.obolibrary.org/obo/CHEBI_25017|http://purl.obolibrary.org/obo/CHEBI_30006
T95 535-538 Chemical denotes Gly http://purl.obolibrary.org/obo/CHEBI_15428
T96 540-543 Chemical denotes Val http://purl.obolibrary.org/obo/CHEBI_16414|http://purl.obolibrary.org/obo/CHEBI_30015
T98 574-577 Chemical denotes Leu http://purl.obolibrary.org/obo/CHEBI_15603|http://purl.obolibrary.org/obo/CHEBI_25017|http://purl.obolibrary.org/obo/CHEBI_30006
T101 675-678 Chemical denotes Alt http://purl.obolibrary.org/obo/CHEBI_37708
T102 694-696 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T104 699-709 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T105 699-704 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T106 705-709 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T67 0-146 Sentence denotes Table 1 Genetic variations of our isolate (BetaCoV/Korea/SNU01/2020) compared to the NC_045512 reference genome of a SARS-CoV-2 isolated in Wuhan
T68 147-216 Sentence denotes Position Gene Ref Alt Ref AA Alt AA Total depth Ref, % Alt, %
T69 217-259 Sentence denotes 2971 ORF1ab G T Met Ile 7917 31 69
T70 260-301 Sentence denotes 6031 ORF1ab C T Asn Asn 7966 5 95
T71 302-345 Sentence denotes 12115 ORF1ab C T Ser Ser 7875 33 67
T72 346-388 Sentence denotes 15597 ORF1ab T C Tyr Tyr 7977 4 96
T73 389-432 Sentence denotes 20936 ORF1ab C T Thr Met 7984 31 69
T74 433-471 Sentence denotes 22224 S C G Ser Trp 7993 33 67
T75 472-514 Sentence denotes 25775 ORF3a G T Trp Leu 7995 32 68
T76 515-557 Sentence denotes 26144 ORF3a G T Gly Val 7885 0 100
T77 558-596 Sentence denotes 26354 E T A Leu His 7609 36 64
T78 597-710 Sentence denotes SARS = severe acute respiratory syndrome, CoV = coronavirus, Ref = reference, Alt = alternative, AA = amino acid.