
PMC:7036342 / 9170-9880
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
210 | 604-642 | Species | denotes | severe acute respiratory syndrome, CoV | Tax:694009 |
196 | 223-229 | Gene | denotes | ORF1ab | Gene:43740578 |
197 | 309-313 | Gene | denotes | ORF1 | Gene:55354 |
198 | 353-359 | Gene | denotes | ORF1ab | Gene:43740578 |
199 | 396-402 | Gene | denotes | ORF1ab | Gene:43740578 |
200 | 479-484 | Gene | denotes | ORF3a | Gene:43740569 |
201 | 522-527 | Gene | denotes | ORF3a | Gene:43740569 |
202 | 266-272 | Gene | denotes | ORF1ab | Gene:43740578 |
203 | 440-441 | Gene | denotes | S | Gene:43740568 |
206 | 44-51 | Species | denotes | BetaCoV | Tax:694002 |
207 | 118-128 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
211 | 645-656 | Species | denotes | coronavirus | Tax:11118 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T58 | 106-112 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
T59 | 157-161 | Body_part | denotes | Gene | http://purl.org/sig/ont/fma/fma74402 |
T60 | 699-709 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T62 | 118-126 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T63 | 118-122 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T64 | 597-601 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T65 | 604-637 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T95 | 116-117 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T96 | 157-161 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | Gene |
T97 | 177-179 | http://purl.obolibrary.org/obo/CLO_0001627 | denotes | AA |
T98 | 185-187 | http://purl.obolibrary.org/obo/CLO_0001627 | denotes | AA |
T99 | 440-444 | http://purl.obolibrary.org/obo/CLO_0008954 | denotes | S C |
T100 | 540-543 | http://purl.obolibrary.org/obo/CLO_0037067 | denotes | Val |
T101 | 571-572 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T102 | 590-592 | http://purl.obolibrary.org/obo/CLO_0001313 | denotes | 36 |
T103 | 694-696 | http://purl.obolibrary.org/obo/CLO_0001627 | denotes | AA |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T51 | 168-171 | Chemical | denotes | Alt | http://purl.obolibrary.org/obo/CHEBI_37708 |
T52 | 177-179 | Chemical | denotes | AA | http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816 |
T54 | 181-184 | Chemical | denotes | Alt | http://purl.obolibrary.org/obo/CHEBI_37708 |
T55 | 185-187 | Chemical | denotes | AA | http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816 |
T57 | 210-213 | Chemical | denotes | Alt | http://purl.obolibrary.org/obo/CHEBI_37708 |
T58 | 237-240 | Chemical | denotes | Met | http://purl.obolibrary.org/obo/CHEBI_16044|http://purl.obolibrary.org/obo/CHEBI_16643|http://purl.obolibrary.org/obo/CHEBI_16811 |
T61 | 242-245 | Chemical | denotes | Ile | http://purl.obolibrary.org/obo/CHEBI_17191|http://purl.obolibrary.org/obo/CHEBI_30009 |
T63 | 280-283 | Chemical | denotes | Asn | http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347 |
T66 | 285-288 | Chemical | denotes | Asn | http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347 |
T69 | 323-326 | Chemical | denotes | Ser | http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999 |
T71 | 328-331 | Chemical | denotes | Ser | http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999 |
T73 | 367-370 | Chemical | denotes | Tyr | http://purl.obolibrary.org/obo/CHEBI_17895|http://purl.obolibrary.org/obo/CHEBI_18186|http://purl.obolibrary.org/obo/CHEBI_46858 |
T76 | 372-375 | Chemical | denotes | Tyr | http://purl.obolibrary.org/obo/CHEBI_17895|http://purl.obolibrary.org/obo/CHEBI_18186|http://purl.obolibrary.org/obo/CHEBI_46858 |
T79 | 410-413 | Chemical | denotes | Thr | http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013 |
T81 | 415-418 | Chemical | denotes | Met | http://purl.obolibrary.org/obo/CHEBI_16044|http://purl.obolibrary.org/obo/CHEBI_16643|http://purl.obolibrary.org/obo/CHEBI_16811 |
T84 | 449-452 | Chemical | denotes | Ser | http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999 |
T86 | 454-457 | Chemical | denotes | Trp | http://purl.obolibrary.org/obo/CHEBI_16828|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_29954 |
T89 | 492-495 | Chemical | denotes | Trp | http://purl.obolibrary.org/obo/CHEBI_16828|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_29954 |
T92 | 497-500 | Chemical | denotes | Leu | http://purl.obolibrary.org/obo/CHEBI_15603|http://purl.obolibrary.org/obo/CHEBI_25017|http://purl.obolibrary.org/obo/CHEBI_30006 |
T95 | 535-538 | Chemical | denotes | Gly | http://purl.obolibrary.org/obo/CHEBI_15428 |
T96 | 540-543 | Chemical | denotes | Val | http://purl.obolibrary.org/obo/CHEBI_16414|http://purl.obolibrary.org/obo/CHEBI_30015 |
T98 | 574-577 | Chemical | denotes | Leu | http://purl.obolibrary.org/obo/CHEBI_15603|http://purl.obolibrary.org/obo/CHEBI_25017|http://purl.obolibrary.org/obo/CHEBI_30006 |
T101 | 675-678 | Chemical | denotes | Alt | http://purl.obolibrary.org/obo/CHEBI_37708 |
T102 | 694-696 | Chemical | denotes | AA | http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816 |
T104 | 699-709 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T105 | 699-704 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T106 | 705-709 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T67 | 0-146 | Sentence | denotes | Table 1 Genetic variations of our isolate (BetaCoV/Korea/SNU01/2020) compared to the NC_045512 reference genome of a SARS-CoV-2 isolated in Wuhan |
T68 | 147-216 | Sentence | denotes | Position Gene Ref Alt Ref AA Alt AA Total depth Ref, % Alt, % |
T69 | 217-259 | Sentence | denotes | 2971 ORF1ab G T Met Ile 7917 31 69 |
T70 | 260-301 | Sentence | denotes | 6031 ORF1ab C T Asn Asn 7966 5 95 |
T71 | 302-345 | Sentence | denotes | 12115 ORF1ab C T Ser Ser 7875 33 67 |
T72 | 346-388 | Sentence | denotes | 15597 ORF1ab T C Tyr Tyr 7977 4 96 |
T73 | 389-432 | Sentence | denotes | 20936 ORF1ab C T Thr Met 7984 31 69 |
T74 | 433-471 | Sentence | denotes | 22224 S C G Ser Trp 7993 33 67 |
T75 | 472-514 | Sentence | denotes | 25775 ORF3a G T Trp Leu 7995 32 68 |
T76 | 515-557 | Sentence | denotes | 26144 ORF3a G T Gly Val 7885 0 100 |
T77 | 558-596 | Sentence | denotes | 26354 E T A Leu His 7609 36 64 |
T78 | 597-710 | Sentence | denotes | SARS = severe acute respiratory syndrome, CoV = coronavirus, Ref = reference, Alt = alternative, AA = amino acid. |