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PMC:7036342 / 3069-4007 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
96 4-11 Species denotes patient Tax:9606
97 575-585 Species denotes SARS-CoV-2 Tax:2697049
98 225-231 Chemical denotes CCL-81
99 290-304 Chemical denotes carbon dioxide MESH:D002245

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T124 14-27 UBERON:0001179 denotes oropharyngeal
T123 87-92 NCBITaxon:10239 denotes viral
T122 206-210 CL_6 denotes Vero
T121 297-304 CHEBI:16526;CHEBI:16526 denotes dioxide
T120 491-495 CL_6 denotes Vero
T119 575-585 SP_7 denotes SARS-CoV-2
T118 753-757 CL_6 denotes Vero

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T16 211-216 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T17 268-273 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T18 499-504 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T19 758-763 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T20 829-834 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T35 575-583 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 575-579 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T33 206-210 http://purl.obolibrary.org/obo/CLO_0009524 denotes Vero
T34 206-210 http://purl.obolibrary.org/obo/CLO_0050515 denotes Vero
T35 211-216 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T36 255-273 http://purl.obolibrary.org/obo/CL_0000010 denotes cultured the cells
T37 285-286 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 491-504 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T39 753-757 http://purl.obolibrary.org/obo/CLO_0009524 denotes Vero
T40 753-757 http://purl.obolibrary.org/obo/CLO_0050515 denotes Vero
T41 758-763 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T42 829-834 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T43 935-936 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 225-228 Chemical denotes CCL http://purl.obolibrary.org/obo/CHEBI_3478
T11 290-304 Chemical denotes carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526
T12 290-296 Chemical denotes carbon http://purl.obolibrary.org/obo/CHEBI_27594|http://purl.obolibrary.org/obo/CHEBI_33415
T14 725-727 Chemical denotes MA http://purl.obolibrary.org/obo/CHEBI_474859|http://purl.obolibrary.org/obo/CHEBI_73610|http://purl.obolibrary.org/obo/CHEBI_90325

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 87-102 http://purl.obolibrary.org/obo/GO_0046794 denotes viral transport
T2 93-102 http://purl.obolibrary.org/obo/GO_0006810 denotes transport

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T19 0-177 Sentence denotes The patient's oropharyngeal samples were obtained by using UTM™ kit containing 1 mL of viral transport media (Copan Diagnostics Inc., Murrieta, CA, USA) on day 7 of her illness.
T20 178-316 Sentence denotes We inoculated monolayers of Vero cells (ATCC ® CCL-81™) with the samples and cultured the cells at 37°C in a 5% carbon dioxide atmosphere.
T21 317-938 Sentence denotes Until 5 days after inoculation, cytopathic effects were not distinct, which is compatible with the previous findings that no specific cytopathic effects were observed in the Vero E6 cells until 6 days after inoculation in the report about first isolation of SARS-CoV-2.3 Five days after inoculation, we did blind passage of culture supernatant into T-25 culture flask (ThermoFisher Scientific Inc., Waltham, MA, USA) with monolayers of Vero cells, and cytopathic effects consisting of rounding and detachment of cells were observed in the whole area of the T-25 flask 3 days after the first blind passage (Fig. 1A and B).