PMC:7036338 / 4972-6944 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7036338","sourcedb":"PMC","sourceid":"7036338","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7036338","text":"Patient 2 was a 55-year-old Korean man, who had been working at Wuhan, China, arrived in Korea via Shanghai on January 22, 2020. The detailed exposure history and a clinical course of this patient is described in Supplementary Data 1. Briefly, he did not have any significant exposure history and developed sore throat and intermittent myalgia since January 10 which was controlled by nonsteroidal anti-inflammatory agent. He was tested on January 23, 2020, confirmed with SARS-CoV-2 infection next day and hospitalized on the same day. Therefore, his admission day (January 24) was considered to be the day 15 of symptom onset. His CXR on day 15 showed infiltration and chest HRCT on day 16 showed bilateral ground-glass opacity (Supplementary Fig. 3A). The viral load kinetics are shown in Fig. 1B (viral RNA copies) and Supplementary Fig. 2 (reverse Ct value). In this patient, the initial test was performed on day 14 of symptom onset and SARS-CoV-2 was detected in both URT and LRT specimens. However, the initial viral loads were relatively lower (49,047 copies/mL for URT and 391,243 copies/mL for LRT) than those of Patient 1 (46,971,053 copies/mL for URT and 9,171,220 copies/mL for LRT) in whom the test was performed on day 2 of symptom onset. SARS-CoV-2 was detected a few more times during hospitalization from both URT and LRT specimens at low levels. As he had just mild cough with little or no sputum, LRT specimens were available only a few times. From D18 (URT specimen) and D20 (LRT specimen), rRT-PCR became undetectable for two consecutive days, respectively. On day 25, RdRp (Ct value of 36.69) and E (Ct value of 33.18) genes was detected again from the URT sample of day 25, it was interpreted as negative due to high Ct value of RdRp gene. From his plasma and stool specimens, only E genes were once detected on day 17 and it was also interpreted as negative result. His CXR improved from day 19 and he was discharged on day 27 (February 5, 2020).","tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"78","span":{"begin":0,"end":7},"obj":"Species"},{"id":"79","span":{"begin":189,"end":196},"obj":"Species"},{"id":"80","span":{"begin":872,"end":879},"obj":"Species"},{"id":"81","span":{"begin":943,"end":953},"obj":"Species"},{"id":"82","span":{"begin":1124,"end":1131},"obj":"Species"},{"id":"83","span":{"begin":1255,"end":1265},"obj":"Species"},{"id":"84","span":{"begin":307,"end":318},"obj":"Disease"},{"id":"85","span":{"begin":336,"end":343},"obj":"Disease"},{"id":"86","span":{"begin":473,"end":493},"obj":"Disease"},{"id":"87","span":{"begin":1386,"end":1391},"obj":"Disease"}],"attributes":[{"id":"A78","pred":"tao:has_database_id","subj":"78","obj":"Tax:9606"},{"id":"A79","pred":"tao:has_database_id","subj":"79","obj":"Tax:9606"},{"id":"A80","pred":"tao:has_database_id","subj":"80","obj":"Tax:9606"},{"id":"A81","pred":"tao:has_database_id","subj":"81","obj":"Tax:2697049"},{"id":"A82","pred":"tao:has_database_id","subj":"82","obj":"Tax:9606"},{"id":"A83","pred":"tao:has_database_id","subj":"83","obj":"Tax:2697049"},{"id":"A84","pred":"tao:has_database_id","subj":"84","obj":"MESH:D010608"},{"id":"A85","pred":"tao:has_database_id","subj":"85","obj":"MESH:D063806"},{"id":"A86","pred":"tao:has_database_id","subj":"86","obj":"MESH:C000657245"},{"id":"A87","pred":"tao:has_database_id","subj":"87","obj":"MESH:D003371"},{"subj":"78","pred":"source","obj":"LitCovid-PubTator"},{"subj":"79","pred":"source","obj":"LitCovid-PubTator"},{"subj":"80","pred":"source","obj":"LitCovid-PubTator"},{"subj":"81","pred":"source","obj":"LitCovid-PubTator"},{"subj":"82","pred":"source","obj":"LitCovid-PubTator"},{"subj":"83","pred":"source","obj":"LitCovid-PubTator"},{"subj":"84","pred":"source","obj":"LitCovid-PubTator"},{"subj":"85","pred":"source","obj":"LitCovid-PubTator"},{"subj":"86","pred":"source","obj":"LitCovid-PubTator"},{"subj":"87","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T33","span":{"begin":312,"end":318},"obj":"Body_part"},{"id":"T34","span":{"begin":671,"end":676},"obj":"Body_part"},{"id":"T35","span":{"begin":807,"end":810},"obj":"Body_part"},{"id":"T36","span":{"begin":975,"end":978},"obj":"Body_part"},{"id":"T37","span":{"begin":983,"end":986},"obj":"Body_part"},{"id":"T38","span":{"begin":1075,"end":1078},"obj":"Body_part"},{"id":"T39","span":{"begin":1105,"end":1108},"obj":"Body_part"},{"id":"T40","span":{"begin":1160,"end":1163},"obj":"Body_part"},{"id":"T41","span":{"begin":1192,"end":1195},"obj":"Body_part"},{"id":"T42","span":{"begin":1329,"end":1332},"obj":"Body_part"},{"id":"T43","span":{"begin":1337,"end":1340},"obj":"Body_part"},{"id":"T44","span":{"begin":1410,"end":1416},"obj":"Body_part"},{"id":"T45","span":{"begin":1418,"end":1421},"obj":"Body_part"},{"id":"T46","span":{"begin":1475,"end":1478},"obj":"Body_part"},{"id":"T47","span":{"begin":1498,"end":1501},"obj":"Body_part"},{"id":"T48","span":{"begin":1677,"end":1680},"obj":"Body_part"},{"id":"T49","span":{"begin":1759,"end":1763},"obj":"Body_part"},{"id":"T50","span":{"begin":1774,"end":1780},"obj":"Body_part"},{"id":"T51","span":{"begin":1785,"end":1790},"obj":"Body_part"}],"attributes":[{"id":"A33","pred":"fma_id","subj":"T33","obj":"http://purl.org/sig/ont/fma/fma228738"},{"id":"A34","pred":"fma_id","subj":"T34","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A35","pred":"fma_id","subj":"T35","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A36","pred":"fma_id","subj":"T36","obj":"http://purl.org/sig/ont/fma/fma45661"},{"id":"A37","pred":"fma_id","subj":"T37","obj":"http://purl.org/sig/ont/fma/fma273029"},{"id":"A38","pred":"fma_id","subj":"T38","obj":"http://purl.org/sig/ont/fma/fma45661"},{"id":"A39","pred":"fma_id","subj":"T39","obj":"http://purl.org/sig/ont/fma/fma273029"},{"id":"A40","pred":"fma_id","subj":"T40","obj":"http://purl.org/sig/ont/fma/fma45661"},{"id":"A41","pred":"fma_id","subj":"T41","obj":"http://purl.org/sig/ont/fma/fma273029"},{"id":"A42","pred":"fma_id","subj":"T42","obj":"http://purl.org/sig/ont/fma/fma45661"},{"id":"A43","pred":"fma_id","subj":"T43","obj":"http://purl.org/sig/ont/fma/fma273029"},{"id":"A44","pred":"fma_id","subj":"T44","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A45","pred":"fma_id","subj":"T45","obj":"http://purl.org/sig/ont/fma/fma273029"},{"id":"A46","pred":"fma_id","subj":"T46","obj":"http://purl.org/sig/ont/fma/fma45661"},{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma273029"},{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma45661"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A50","pred":"fma_id","subj":"T50","obj":"http://purl.org/sig/ont/fma/fma62970"},{"id":"A51","pred":"fma_id","subj":"T51","obj":"http://purl.org/sig/ont/fma/fma64183"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T35","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T36","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T37","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T38","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T39","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T40","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T41","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T42","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T43","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T44","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T45","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T46","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T47","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T48","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T50","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T51","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T21","span":{"begin":312,"end":318},"obj":"Body_part"},{"id":"T22","span":{"begin":671,"end":676},"obj":"Body_part"},{"id":"T23","span":{"begin":975,"end":978},"obj":"Body_part"},{"id":"T24","span":{"begin":1075,"end":1078},"obj":"Body_part"},{"id":"T25","span":{"begin":1160,"end":1163},"obj":"Body_part"},{"id":"T26","span":{"begin":1329,"end":1332},"obj":"Body_part"},{"id":"T27","span":{"begin":1410,"end":1416},"obj":"Body_part"},{"id":"T28","span":{"begin":1475,"end":1478},"obj":"Body_part"},{"id":"T29","span":{"begin":1677,"end":1680},"obj":"Body_part"},{"id":"T30","span":{"begin":1785,"end":1790},"obj":"Body_part"}],"attributes":[{"id":"A21","pred":"uberon_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/UBERON_0000341"},{"id":"A22","pred":"uberon_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"id":"A23","pred":"uberon_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/UBERON_0001557"},{"id":"A24","pred":"uberon_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/UBERON_0001557"},{"id":"A25","pred":"uberon_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/UBERON_0001557"},{"id":"A26","pred":"uberon_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/UBERON_0001557"},{"id":"A27","pred":"uberon_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A28","pred":"uberon_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/UBERON_0001557"},{"id":"A29","pred":"uberon_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/UBERON_0001557"},{"id":"A30","pred":"uberon_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T21","span":{"begin":244,"end":246},"obj":"Disease"},{"id":"T22","span":{"begin":307,"end":318},"obj":"Disease"},{"id":"T23","span":{"begin":473,"end":481},"obj":"Disease"},{"id":"T24","span":{"begin":484,"end":493},"obj":"Disease"},{"id":"T25","span":{"begin":943,"end":951},"obj":"Disease"},{"id":"T26","span":{"begin":1255,"end":1263},"obj":"Disease"},{"id":"T27","span":{"begin":1369,"end":1371},"obj":"Disease"},{"id":"T28","span":{"begin":1925,"end":1927},"obj":"Disease"}],"attributes":[{"id":"A21","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0017319"},{"id":"A22","pred":"mondo_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/MONDO_0002258"},{"id":"A23","pred":"mondo_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A24","pred":"mondo_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A25","pred":"mondo_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A26","pred":"mondo_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A27","pred":"mondo_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/MONDO_0017319"},{"id":"A28","pred":"mondo_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/MONDO_0017319"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T22","span":{"begin":14,"end":15},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T23","span":{"begin":119,"end":121},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T24","span":{"begin":163,"end":164},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T25","span":{"begin":430,"end":436},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T26","span":{"begin":671,"end":676},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T27","span":{"begin":893,"end":901},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T28","span":{"begin":1209,"end":1217},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T29","span":{"begin":1279,"end":1280},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T30","span":{"begin":1452,"end":1453},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T31","span":{"begin":1643,"end":1648},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T32","span":{"begin":1759,"end":1763},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T33","span":{"begin":1774,"end":1780},"obj":"http://purl.obolibrary.org/obo/UBERON_0001969"},{"id":"T34","span":{"begin":1809,"end":1814},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T35","span":{"begin":1950,"end":1952},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"}],"attributes":[{"subj":"T22","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T35","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T4","span":{"begin":385,"end":421},"obj":"Chemical"},{"id":"T5","span":{"begin":398,"end":421},"obj":"Chemical"}],"attributes":[{"id":"A4","pred":"chebi_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_35475"},{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_67079"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T33","span":{"begin":0,"end":128},"obj":"Sentence"},{"id":"T34","span":{"begin":129,"end":234},"obj":"Sentence"},{"id":"T35","span":{"begin":235,"end":422},"obj":"Sentence"},{"id":"T36","span":{"begin":423,"end":536},"obj":"Sentence"},{"id":"T37","span":{"begin":537,"end":628},"obj":"Sentence"},{"id":"T38","span":{"begin":629,"end":754},"obj":"Sentence"},{"id":"T39","span":{"begin":755,"end":863},"obj":"Sentence"},{"id":"T40","span":{"begin":864,"end":997},"obj":"Sentence"},{"id":"T41","span":{"begin":998,"end":1254},"obj":"Sentence"},{"id":"T42","span":{"begin":1255,"end":1365},"obj":"Sentence"},{"id":"T43","span":{"begin":1366,"end":1464},"obj":"Sentence"},{"id":"T44","span":{"begin":1465,"end":1580},"obj":"Sentence"},{"id":"T45","span":{"begin":1581,"end":1764},"obj":"Sentence"},{"id":"T46","span":{"begin":1765,"end":1891},"obj":"Sentence"},{"id":"T47","span":{"begin":1892,"end":1972},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T33","pred":"source","obj":"LitCovid-sentences"},{"subj":"T34","pred":"source","obj":"LitCovid-sentences"},{"subj":"T35","pred":"source","obj":"LitCovid-sentences"},{"subj":"T36","pred":"source","obj":"LitCovid-sentences"},{"subj":"T37","pred":"source","obj":"LitCovid-sentences"},{"subj":"T38","pred":"source","obj":"LitCovid-sentences"},{"subj":"T39","pred":"source","obj":"LitCovid-sentences"},{"subj":"T40","pred":"source","obj":"LitCovid-sentences"},{"subj":"T41","pred":"source","obj":"LitCovid-sentences"},{"subj":"T42","pred":"source","obj":"LitCovid-sentences"},{"subj":"T43","pred":"source","obj":"LitCovid-sentences"},{"subj":"T44","pred":"source","obj":"LitCovid-sentences"},{"subj":"T45","pred":"source","obj":"LitCovid-sentences"},{"subj":"T46","pred":"source","obj":"LitCovid-sentences"},{"subj":"T47","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T6","span":{"begin":307,"end":318},"obj":"Phenotype"},{"id":"T7","span":{"begin":336,"end":343},"obj":"Phenotype"},{"id":"T8","span":{"begin":1386,"end":1391},"obj":"Phenotype"}],"attributes":[{"id":"A6","pred":"hp_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/HP_0033050"},{"id":"A7","pred":"hp_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/HP_0003326"},{"id":"A8","pred":"hp_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/HP_0012735"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-HP"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#93ecc2","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#eca893"},{"id":"LitCovid-PD-UBERON","color":"#9398ec"},{"id":"LitCovid-PD-MONDO","color":"#b2ec93"},{"id":"LitCovid-PD-CLO","color":"#ec93cc"},{"id":"LitCovid-PD-CHEBI","color":"#93e6ec"},{"id":"LitCovid-sentences","color":"#ecd893"},{"id":"LitCovid-PD-HP","color":"#be93ec"}]}]}}