PMC:7036338 / 4972-6944
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 78 | 0-7 | Species | denotes | Patient | Tax:9606 |
| 79 | 189-196 | Species | denotes | patient | Tax:9606 |
| 80 | 872-879 | Species | denotes | patient | Tax:9606 |
| 81 | 943-953 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 82 | 1124-1131 | Species | denotes | Patient | Tax:9606 |
| 83 | 1255-1265 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 84 | 307-318 | Disease | denotes | sore throat | MESH:D010608 |
| 85 | 336-343 | Disease | denotes | myalgia | MESH:D063806 |
| 86 | 473-493 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
| 87 | 1386-1391 | Disease | denotes | cough | MESH:D003371 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T33 | 312-318 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
| T34 | 671-676 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T35 | 807-810 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T36 | 975-978 | Body_part | denotes | URT | http://purl.org/sig/ont/fma/fma45661 |
| T37 | 983-986 | Body_part | denotes | LRT | http://purl.org/sig/ont/fma/fma273029 |
| T38 | 1075-1078 | Body_part | denotes | URT | http://purl.org/sig/ont/fma/fma45661 |
| T39 | 1105-1108 | Body_part | denotes | LRT | http://purl.org/sig/ont/fma/fma273029 |
| T40 | 1160-1163 | Body_part | denotes | URT | http://purl.org/sig/ont/fma/fma45661 |
| T41 | 1192-1195 | Body_part | denotes | LRT | http://purl.org/sig/ont/fma/fma273029 |
| T42 | 1329-1332 | Body_part | denotes | URT | http://purl.org/sig/ont/fma/fma45661 |
| T43 | 1337-1340 | Body_part | denotes | LRT | http://purl.org/sig/ont/fma/fma273029 |
| T44 | 1410-1416 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T45 | 1418-1421 | Body_part | denotes | LRT | http://purl.org/sig/ont/fma/fma273029 |
| T46 | 1475-1478 | Body_part | denotes | URT | http://purl.org/sig/ont/fma/fma45661 |
| T47 | 1498-1501 | Body_part | denotes | LRT | http://purl.org/sig/ont/fma/fma273029 |
| T48 | 1677-1680 | Body_part | denotes | URT | http://purl.org/sig/ont/fma/fma45661 |
| T49 | 1759-1763 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T50 | 1774-1780 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T51 | 1785-1790 | Body_part | denotes | stool | http://purl.org/sig/ont/fma/fma64183 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T21 | 312-318 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
| T22 | 671-676 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T23 | 975-978 | Body_part | denotes | URT | http://purl.obolibrary.org/obo/UBERON_0001557 |
| T24 | 1075-1078 | Body_part | denotes | URT | http://purl.obolibrary.org/obo/UBERON_0001557 |
| T25 | 1160-1163 | Body_part | denotes | URT | http://purl.obolibrary.org/obo/UBERON_0001557 |
| T26 | 1329-1332 | Body_part | denotes | URT | http://purl.obolibrary.org/obo/UBERON_0001557 |
| T27 | 1410-1416 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T28 | 1475-1478 | Body_part | denotes | URT | http://purl.obolibrary.org/obo/UBERON_0001557 |
| T29 | 1677-1680 | Body_part | denotes | URT | http://purl.obolibrary.org/obo/UBERON_0001557 |
| T30 | 1785-1790 | Body_part | denotes | stool | http://purl.obolibrary.org/obo/UBERON_0001988 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T21 | 244-246 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T22 | 307-318 | Disease | denotes | sore throat | http://purl.obolibrary.org/obo/MONDO_0002258 |
| T23 | 473-481 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T24 | 484-493 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T25 | 943-951 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T26 | 1255-1263 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T27 | 1369-1371 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T28 | 1925-1927 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T22 | 14-15 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T23 | 119-121 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T24 | 163-164 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T25 | 430-436 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T26 | 671-676 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T27 | 893-901 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test was |
| T28 | 1209-1217 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test was |
| T29 | 1279-1280 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T30 | 1452-1453 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T31 | 1643-1648 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T32 | 1759-1763 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T33 | 1774-1780 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T34 | 1809-1814 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T35 | 1950-1952 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T4 | 385-421 | Chemical | denotes | nonsteroidal anti-inflammatory agent | http://purl.obolibrary.org/obo/CHEBI_35475 |
| T5 | 398-421 | Chemical | denotes | anti-inflammatory agent | http://purl.obolibrary.org/obo/CHEBI_67079 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T33 | 0-128 | Sentence | denotes | Patient 2 was a 55-year-old Korean man, who had been working at Wuhan, China, arrived in Korea via Shanghai on January 22, 2020. |
| T34 | 129-234 | Sentence | denotes | The detailed exposure history and a clinical course of this patient is described in Supplementary Data 1. |
| T35 | 235-422 | Sentence | denotes | Briefly, he did not have any significant exposure history and developed sore throat and intermittent myalgia since January 10 which was controlled by nonsteroidal anti-inflammatory agent. |
| T36 | 423-536 | Sentence | denotes | He was tested on January 23, 2020, confirmed with SARS-CoV-2 infection next day and hospitalized on the same day. |
| T37 | 537-628 | Sentence | denotes | Therefore, his admission day (January 24) was considered to be the day 15 of symptom onset. |
| T38 | 629-754 | Sentence | denotes | His CXR on day 15 showed infiltration and chest HRCT on day 16 showed bilateral ground-glass opacity (Supplementary Fig. 3A). |
| T39 | 755-863 | Sentence | denotes | The viral load kinetics are shown in Fig. 1B (viral RNA copies) and Supplementary Fig. 2 (reverse Ct value). |
| T40 | 864-997 | Sentence | denotes | In this patient, the initial test was performed on day 14 of symptom onset and SARS-CoV-2 was detected in both URT and LRT specimens. |
| T41 | 998-1254 | Sentence | denotes | However, the initial viral loads were relatively lower (49,047 copies/mL for URT and 391,243 copies/mL for LRT) than those of Patient 1 (46,971,053 copies/mL for URT and 9,171,220 copies/mL for LRT) in whom the test was performed on day 2 of symptom onset. |
| T42 | 1255-1365 | Sentence | denotes | SARS-CoV-2 was detected a few more times during hospitalization from both URT and LRT specimens at low levels. |
| T43 | 1366-1464 | Sentence | denotes | As he had just mild cough with little or no sputum, LRT specimens were available only a few times. |
| T44 | 1465-1580 | Sentence | denotes | From D18 (URT specimen) and D20 (LRT specimen), rRT-PCR became undetectable for two consecutive days, respectively. |
| T45 | 1581-1764 | Sentence | denotes | On day 25, RdRp (Ct value of 36.69) and E (Ct value of 33.18) genes was detected again from the URT sample of day 25, it was interpreted as negative due to high Ct value of RdRp gene. |
| T46 | 1765-1891 | Sentence | denotes | From his plasma and stool specimens, only E genes were once detected on day 17 and it was also interpreted as negative result. |
| T47 | 1892-1972 | Sentence | denotes | His CXR improved from day 19 and he was discharged on day 27 (February 5, 2020). |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T6 | 307-318 | Phenotype | denotes | sore throat | http://purl.obolibrary.org/obo/HP_0033050 |
| T7 | 336-343 | Phenotype | denotes | myalgia | http://purl.obolibrary.org/obo/HP_0003326 |
| T8 | 1386-1391 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |