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PMC:7033720 / 7254-9688 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
90 1998-2001 Gene denotes AST Gene:26503
91 2105-2109 Chemical denotes UREA MESH:D014508
98 2226-2229 Gene denotes AST Gene:26503
99 2290-2300 Chemical denotes creatinine MESH:D003404
100 2329-2339 Chemical denotes creatinine MESH:D003404
101 2341-2345 Chemical denotes UREA MESH:D014508
102 2348-2352 Chemical denotes Urea MESH:D014508
103 2353-2361 Chemical denotes nitrogen MESH:D009584
128 351-355 Gene denotes a 21 Gene:28922
129 71-79 Species denotes patients Tax:9606
130 124-131 Species denotes Patient Tax:9606
131 337-344 Species denotes Patient Tax:9606
132 601-611 Species denotes outpatient Tax:9606
133 744-752 Species denotes patients Tax:9606
134 1031-1038 Species denotes patient Tax:9606
135 1320-1327 Species denotes patient Tax:9606
136 1416-1424 Species denotes patients Tax:9606
137 1548-1555 Species denotes patient Tax:9606
138 1562-1569 Species denotes patient Tax:9606
139 1126-1130 Chemical denotes SpO2
140 1139-1145 Chemical denotes oxygen MESH:D010100
141 61-70 Disease denotes pneumonia MESH:D011014
142 204-209 Disease denotes fever MESH:D005334
143 240-245 Disease denotes cough MESH:D003371
144 402-415 Disease denotes febrile cough MESH:D003371
145 425-430 Disease denotes fever MESH:D005334
146 860-876 Disease denotes viral infections MESH:D001102
147 954-963 Disease denotes infection MESH:D007239
148 1097-1116 Disease denotes shortness of breath MESH:D004417
149 1190-1206 Disease denotes pleural effusion MESH:D010996
150 1346-1372 Disease denotes Type I respiratory failure MESH:D012131
151 1451-1470 Disease denotes Infectious Diseases MESH:D003141

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T42 264-270 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T43 462-468 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T44 722-727 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T45 797-803 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T46 821-825 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T47 895-900 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T48 1082-1088 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T49 1214-1223 Body_part denotes left lung http://purl.org/sig/ont/fma/fma7310
T50 1831-1842 Body_part denotes Neutrophils http://purl.org/sig/ont/fma/fma62860
T51 1871-1883 Body_part denotes T lymphocyte http://purl.org/sig/ont/fma/fma62870
T52 1938-1946 Body_part denotes Platelet http://purl.org/sig/ont/fma/fma62851
T53 2200-2207 Body_part denotes alanine http://purl.org/sig/ont/fma/fma82749
T54 2368-2379 Body_part denotes haemoglobin http://purl.org/sig/ont/fma/fma62293
T55 2422-2427 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 264-270 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T4 462-468 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T5 722-727 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 797-803 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T7 821-831 Body_part denotes lung field http://purl.obolibrary.org/obo/UBERON_0022361
T8 821-825 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 1190-1206 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T10 1214-1223 Body_part denotes left lung http://purl.obolibrary.org/obo/UBERON_0002168
T11 1219-1223 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T12 1286-1295 Body_part denotes extension http://purl.obolibrary.org/obo/UBERON_2000106
T13 2422-2427 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T9 61-70 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T10 860-876 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T11 954-963 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 1353-1372 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T13 1451-1461 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T14 2039-2041 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T15 2058-2060 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T16 2260-2262 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T17 2282-2284 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T52 138-139 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 152-156 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T54 152-156 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T55 351-355 http://purl.obolibrary.org/obo/CLO_0053711 denotes a 21
T56 365-371 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T57 482-483 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 658-662 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T59 722-727 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T60 797-803 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T61 821-825 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T62 821-825 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T63 826-831 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T64 840-842 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T65 895-900 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T66 1158-1159 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T67 1190-1206 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T68 1214-1223 http://purl.obolibrary.org/obo/UBERON_0002168 denotes left lung
T69 1714-1718 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T70 1796-1800 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T71 1910-1912 http://purl.obolibrary.org/obo/CLO_0003622 denotes Hb
T72 2015-2017 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T73 2036-2038 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T74 2047-2049 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T75 2050-2052 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T76 2061-2063 http://purl.obolibrary.org/obo/PR_000010213 denotes MB
T77 2069-2071 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T78 2285-2287 http://purl.obolibrary.org/obo/PR_000010213 denotes MB
T79 2308-2310 http://purl.obolibrary.org/obo/PR_000010213 denotes MB
T80 2363-2365 http://purl.obolibrary.org/obo/CLO_0003622 denotes Hb
T81 2422-2427 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T82 2422-2427 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T15 152-156 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T16 1139-1145 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T17 1998-2001 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T18 2105-2109 Chemical denotes UREA http://purl.obolibrary.org/obo/CHEBI_16199
T19 2200-2207 Chemical denotes alanine http://purl.obolibrary.org/obo/CHEBI_16449
T20 2226-2229 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T21 2232-2241 Chemical denotes aspartate http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314
T24 2265-2273 Chemical denotes creatine http://purl.obolibrary.org/obo/CHEBI_16919|http://purl.obolibrary.org/obo/CHEBI_57947
T26 2290-2300 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T27 2329-2339 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T28 2341-2345 Chemical denotes UREA http://purl.obolibrary.org/obo/CHEBI_16199
T29 2348-2352 Chemical denotes Urea http://purl.obolibrary.org/obo/CHEBI_16199
T30 2353-2361 Chemical denotes nitrogen http://purl.obolibrary.org/obo/CHEBI_25555
T31 2368-2379 Chemical denotes haemoglobin http://purl.obolibrary.org/obo/CHEBI_35143
T32 2387-2394 Chemical denotes lactate http://purl.obolibrary.org/obo/CHEBI_24996

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 61-70 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 204-209 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T9 240-245 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T10 410-415 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T11 417-423 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T12 425-430 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T13 767-786 Phenotype denotes pulmonary opacities http://purl.obolibrary.org/obo/HP_0031457
T14 1097-1116 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T15 1190-1206 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T16 1353-1372 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 860-876 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T3 2058-2063 http://purl.obolibrary.org/obo/GO_0004111 denotes CK-MB
T4 2282-2287 http://purl.obolibrary.org/obo/GO_0004111 denotes CK-MB

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T66 0-123 Sentence denotes On 2nd January 2020, samples were collected from two unusual pneumonia patients from Zhongnan Hospital of Wuhan University.
T67 124-336 Sentence denotes Patient 1 was a 39-year-old male staff at Huanan Seafood Market who experienced fever (up to 37.7°C) and aggravated cough with frothy white sputum for 5 days before admitted to the hospital on 25th December 2019.
T68 337-547 Sentence denotes Patient 2 was a 21-year-old female who developed an intermittent febrile cough, chills, fever (up to 40°C), and frothy white sputum after having a contact with Huanan Seafood Market staff on 22nd December 2019.
T69 548-622 Sentence denotes She was admitted on 28th December after unsuccessful outpatient treatment.
T70 623-721 Sentence denotes The results of clinical laboratory test on the first day of hospitalization are listed in Table 1.
T71 722-901 Sentence denotes Chest CT scan of both patients showed patchy pulmonary opacities below the pleura in the bilateral lung field (Figure S1), which suggests viral infections may occur in both lungs.
T72 902-1007 Sentence denotes However, the subsequent routine anti-viral and anti-infection treatment did not alleviate their symptoms.
T73 1008-1157 Sentence denotes On 31st December 2019, patient 1 had more severe symptoms, including poor mental states, shortness of breath, and 86% SpO2 without oxygen inhalation.
T74 1158-1315 Sentence denotes A CT re-examination showed mild pleural effusion in the left lung, an increase in the density of ground-glass opacities, and an extension of the patchy area.
T75 1316-1389 Sentence denotes The patient later experienced Type I respiratory failure on the same day.
T76 1390-1505 Sentence denotes On 2nd January 2020, both patients were transferred to Wuhan Infectious Diseases Hospital for continuing treatment.
T77 1506-1684 Sentence denotes To the date this manuscript was prepared, patient 1 and patient 2 were later discharged from the hospital in stable condition on 12th January and 11th January 2020, respectively.
T78 1685-1693 Sentence denotes Table 1.
T79 1694-1755 Sentence denotes Clinical laboratory test on the first day of hospitalization.
T80 1756-1800 Sentence denotes Items Case 1 Case 2 Normal range of lab test
T81 1801-1830 Sentence denotes WBC, ×109/L 5.23 2.89 3.5–9.5
T82 1831-1870 Sentence denotes Neutrophils, ×109/L/L 3.58 1.92 1.8–6.3
T83 1871-1909 Sentence denotes T lymphocyte, ×109/L 1.32 0.46 1.1–3.2
T84 1910-1937 Sentence denotes Hb, g/L 138.6 127.5 115–150
T85 1938-1970 Sentence denotes Platelet, ×109/L 170 117 125–350
T86 1971-1997 Sentence denotes Albumin, g/L 65.9 47 40–55
T87 1998-2017 Sentence denotes AST, U/L 92 33 7–45
T88 2018-2038 Sentence denotes ALT, U/L 30 30 13–45
T89 2039-2057 Sentence denotes CK, U/L 36 35 <171
T90 2058-2079 Sentence denotes CK-MB, U/L 11 10 0–25
T91 2080-2104 Sentence denotes LDH, U/L 313 247 110–245
T92 2105-2135 Sentence denotes UREA, mmol/L 2.81 2.7 2.8–7.60
T93 2136-2164 Sentence denotes CREA, μmol/L 73.9 57.2 49–90
T94 2165-2434 Sentence denotes Definition of abbreviations: ALT = alanine aminotransferase; AST = aspartate aminotransferase; CK = creatine kinase; CK-MB = creatinine kinase–MB isoenzyme; CREA = creatinine; UREA = Urea nitrogen; Hb = haemoglobin; LDH = lactate dehydrogenase; WBC = white blood count.