PMC:7033720 / 14028-16434
Annnotations
LitCovid-PubTator
{"project":"LitCovid-PubTator","denotations":[{"id":"234","span":{"begin":1124,"end":1130},"obj":"Species"},{"id":"235","span":{"begin":1333,"end":1339},"obj":"Species"},{"id":"236","span":{"begin":195,"end":200},"obj":"CellLine"},{"id":"237","span":{"begin":257,"end":262},"obj":"CellLine"},{"id":"238","span":{"begin":323,"end":328},"obj":"CellLine"},{"id":"239","span":{"begin":387,"end":392},"obj":"CellLine"},{"id":"240","span":{"begin":451,"end":456},"obj":"CellLine"},{"id":"241","span":{"begin":514,"end":519},"obj":"CellLine"},{"id":"242","span":{"begin":578,"end":583},"obj":"CellLine"},{"id":"243","span":{"begin":642,"end":647},"obj":"CellLine"},{"id":"244","span":{"begin":705,"end":710},"obj":"CellLine"},{"id":"245","span":{"begin":770,"end":775},"obj":"CellLine"},{"id":"246","span":{"begin":833,"end":838},"obj":"CellLine"},{"id":"247","span":{"begin":896,"end":901},"obj":"CellLine"},{"id":"248","span":{"begin":978,"end":983},"obj":"CellLine"},{"id":"249","span":{"begin":1046,"end":1051},"obj":"CellLine"},{"id":"250","span":{"begin":1117,"end":1122},"obj":"CellLine"},{"id":"251","span":{"begin":1186,"end":1191},"obj":"CellLine"},{"id":"252","span":{"begin":1256,"end":1261},"obj":"CellLine"},{"id":"253","span":{"begin":1311,"end":1331},"obj":"CellLine"},{"id":"254","span":{"begin":1395,"end":1400},"obj":"CellLine"},{"id":"255","span":{"begin":1462,"end":1467},"obj":"CellLine"},{"id":"256","span":{"begin":1530,"end":1535},"obj":"CellLine"},{"id":"257","span":{"begin":1593,"end":1598},"obj":"CellLine"},{"id":"259","span":{"begin":50,"end":55},"obj":"CellLine"}],"attributes":[{"id":"A234","pred":"tao:has_database_id","subj":"234","obj":"Tax:447219"},{"id":"A235","pred":"tao:has_database_id","subj":"235","obj":"Tax:447224"},{"id":"A236","pred":"tao:has_database_id","subj":"236","obj":"CVCL:9726"},{"id":"A237","pred":"tao:has_database_id","subj":"237","obj":"CVCL:9726"},{"id":"A238","pred":"tao:has_database_id","subj":"238","obj":"CVCL:9726"},{"id":"A239","pred":"tao:has_database_id","subj":"239","obj":"CVCL:9726"},{"id":"A240","pred":"tao:has_database_id","subj":"240","obj":"CVCL:9726"},{"id":"A241","pred":"tao:has_database_id","subj":"241","obj":"CVCL:9726"},{"id":"A242","pred":"tao:has_database_id","subj":"242","obj":"CVCL:9726"},{"id":"A243","pred":"tao:has_database_id","subj":"243","obj":"CVCL:9726"},{"id":"A244","pred":"tao:has_database_id","subj":"244","obj":"CVCL:9726"},{"id":"A245","pred":"tao:has_database_id","subj":"245","obj":"CVCL:9726"},{"id":"A246","pred":"tao:has_database_id","subj":"246","obj":"CVCL:9726"},{"id":"A247","pred":"tao:has_database_id","subj":"247","obj":"CVCL:9726"},{"id":"A248","pred":"tao:has_database_id","subj":"248","obj":"CVCL:9726"},{"id":"A249","pred":"tao:has_database_id","subj":"249","obj":"CVCL:9726"},{"id":"A250","pred":"tao:has_database_id","subj":"250","obj":"CVCL:9726"},{"id":"A251","pred":"tao:has_database_id","subj":"251","obj":"CVCL:9726"},{"id":"A252","pred":"tao:has_database_id","subj":"252","obj":"CVCL:9726"},{"id":"A253","pred":"tao:has_database_id","subj":"253","obj":"CVCL:6820"},{"id":"A254","pred":"tao:has_database_id","subj":"254","obj":"CVCL:9726"},{"id":"A255","pred":"tao:has_database_id","subj":"255","obj":"CVCL:9726"},{"id":"A256","pred":"tao:has_database_id","subj":"256","obj":"CVCL:9726"},{"id":"A257","pred":"tao:has_database_id","subj":"257","obj":"CVCL:9726"},{"id":"A259","pred":"tao:has_database_id","subj":"259","obj":"CVCL:9726"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 2. Minor nucleotide variant identified from WHU01 and WHU02 genomes.\nStrain Region Variant Start Poisiton End Position Length Change Coverage Polymorphism Type VariantFrequency (%) P-value\nWHU01 1a T 221 221 1 C → T 27 SNP (transition) 14.80 6.70E-07\nWHU01 1a A 1103 1103 1 T → A 119 SNP (transversion) 5.00 5.40E-14\nWHU01 1a A 1820 1820 1 G → A 97 SNP (transition) 11.30 2.00E-27\nWHU01 1a G 3916 3916 1 A → G 113 SNP (transition) 5.30 3.90E-14\nWHU01 1a TT 3919 3920 2 AA → TT 110 Substitution 5.50 1.30E-13\nWHU01 1a T 3923 3923 1 C → T 108 SNP (transition) 5.60 3.00E-14\nWHU01 1a T 5701 5701 1 C → T 247 SNP (transition) 5.30 5.70E-29\nWHU01 1a G 8892 8892 1 A → G 69 SNP (transition) 5.80 5.40E-10\nWHU01 1a A 8895 8895 1 T → A 65 SNP (transversion) 6.20 4.20E-10\nWHU01 1a G 8975 8975 1 A → G 59 SNP (transition) 5.10 6.50E-08\nWHU01 1a C 9114 9114 1 T → C 43 SNP (transition) 7.00 7.70E-07\nWHU01 1a 11,081 11,081 1 (T)8 → (T)7 78 Deletion (tandem repeat) 12.80 1.20E-20\nWHU01 1a C 13,074 13,074 1 T → C 110 SNP (transition) 5.50 3.30E-14\nWHU01 1a TT 13,282 13,283 2 AA → TT 78 → 79 Substitution 5.10 9.40E-10\nWHU01 1b A 15,079 15,079 1 C → A 57 SNP (transversion) 8.80 1.30E-13\nWHU01 1b T 18,252 18,252 1 A → T 192 SNP (transversion) 6.30 5.50E-23\nWHU01 1b T 19,163 19,163 1 C → → T 89 SNP (transition) 19.10 1.90E-47\nWHU01 1b A 20,234 20,234 1 C → A 67 SNP (transversion) 6.00 1.20E-09\nWHU01 S A 22,315 22,315 1 G → A 182 SNP (transition) 6.60 4.70E-28\nWHU01 S A 22,447 22,447 1 C → A 54 SNP (transversion) 5.60 2.00E-07\nWHU01 S C 24,322 24,322 1 A → C 325 SNP (transversion) 38.50 0\nWHU01 Other ORF A 26,313 26,313 1 G → A 29 SNP (transition) 10.30 1.50E-08\nWHU02 1a T 1100 1100 1 C → T 390 SNP (transition) 6.70 1.50E-56\nWHU02 1a A 1103 1103 1 T → A 391 SNP (transversion) 5.90 3.10E-51\nWHU02 1a A 1820 1820 1 G → A 382 SNP (transition) 5.20 1.00E-41\nWHU02 1a C 6823 6822 0 +C 129 Insertion 5.40 2.50E-16\nWHU02 1a A 10,778 10,778 1 T → A 323 SNP (transversion) 5.30 2.40E-32\nWHU02 1a T 11,366 11,366 1 A → T 250 SNP (transversion) 6.00 4.40E-31\nWHU02 1a T 11,562 11,562 1 C → T 397 SNP (transition) 13.60 1.30E-138\nWHU02 1b T 13,692 13,692 1 A → T 356 SNP (transversion) 7.00 1.60E-57\nWHU02 1b C 14,306 14,306 1 T → C 279 SNP (transition) 7.90 9.20E-50\nWHU02 1b A 14,315 14,315 1 G → A 244 SNP (transition) 10.70 6.90E-57\nWHU02 Other ORF A 26,504 26,504 1 G → A 63 SNP (transition) 6.30 1.50E-10"}
LitCovid-PD-FMA-UBERON
{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T71","span":{"begin":15,"end":25},"obj":"Body_part"},{"id":"T72","span":{"begin":66,"end":73},"obj":"Body_part"}],"attributes":[{"id":"A71","pred":"fma_id","subj":"T71","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A72","pred":"fma_id","subj":"T72","obj":"http://purl.org/sig/ont/fma/fma84116"}],"text":"Table 2. Minor nucleotide variant identified from WHU01 and WHU02 genomes.\nStrain Region Variant Start Poisiton End Position Length Change Coverage Polymorphism Type VariantFrequency (%) P-value\nWHU01 1a T 221 221 1 C → T 27 SNP (transition) 14.80 6.70E-07\nWHU01 1a A 1103 1103 1 T → A 119 SNP (transversion) 5.00 5.40E-14\nWHU01 1a A 1820 1820 1 G → A 97 SNP (transition) 11.30 2.00E-27\nWHU01 1a G 3916 3916 1 A → G 113 SNP (transition) 5.30 3.90E-14\nWHU01 1a TT 3919 3920 2 AA → TT 110 Substitution 5.50 1.30E-13\nWHU01 1a T 3923 3923 1 C → T 108 SNP (transition) 5.60 3.00E-14\nWHU01 1a T 5701 5701 1 C → T 247 SNP (transition) 5.30 5.70E-29\nWHU01 1a G 8892 8892 1 A → G 69 SNP (transition) 5.80 5.40E-10\nWHU01 1a A 8895 8895 1 T → A 65 SNP (transversion) 6.20 4.20E-10\nWHU01 1a G 8975 8975 1 A → G 59 SNP (transition) 5.10 6.50E-08\nWHU01 1a C 9114 9114 1 T → C 43 SNP (transition) 7.00 7.70E-07\nWHU01 1a 11,081 11,081 1 (T)8 → (T)7 78 Deletion (tandem repeat) 12.80 1.20E-20\nWHU01 1a C 13,074 13,074 1 T → C 110 SNP (transition) 5.50 3.30E-14\nWHU01 1a TT 13,282 13,283 2 AA → TT 78 → 79 Substitution 5.10 9.40E-10\nWHU01 1b A 15,079 15,079 1 C → A 57 SNP (transversion) 8.80 1.30E-13\nWHU01 1b T 18,252 18,252 1 A → T 192 SNP (transversion) 6.30 5.50E-23\nWHU01 1b T 19,163 19,163 1 C → → T 89 SNP (transition) 19.10 1.90E-47\nWHU01 1b A 20,234 20,234 1 C → A 67 SNP (transversion) 6.00 1.20E-09\nWHU01 S A 22,315 22,315 1 G → A 182 SNP (transition) 6.60 4.70E-28\nWHU01 S A 22,447 22,447 1 C → A 54 SNP (transversion) 5.60 2.00E-07\nWHU01 S C 24,322 24,322 1 A → C 325 SNP (transversion) 38.50 0\nWHU01 Other ORF A 26,313 26,313 1 G → A 29 SNP (transition) 10.30 1.50E-08\nWHU02 1a T 1100 1100 1 C → T 390 SNP (transition) 6.70 1.50E-56\nWHU02 1a A 1103 1103 1 T → A 391 SNP (transversion) 5.90 3.10E-51\nWHU02 1a A 1820 1820 1 G → A 382 SNP (transition) 5.20 1.00E-41\nWHU02 1a C 6823 6822 0 +C 129 Insertion 5.40 2.50E-16\nWHU02 1a A 10,778 10,778 1 T → A 323 SNP (transversion) 5.30 2.40E-32\nWHU02 1a T 11,366 11,366 1 A → T 250 SNP (transversion) 6.00 4.40E-31\nWHU02 1a T 11,562 11,562 1 C → T 397 SNP (transition) 13.60 1.30E-138\nWHU02 1b T 13,692 13,692 1 A → T 356 SNP (transversion) 7.00 1.60E-57\nWHU02 1b C 14,306 14,306 1 T → C 279 SNP (transition) 7.90 9.20E-50\nWHU02 1b A 14,315 14,315 1 G → A 244 SNP (transition) 10.70 6.90E-57\nWHU02 Other ORF A 26,504 26,504 1 G → A 63 SNP (transition) 6.30 1.50E-10"}
LitCovid-PD-CLO
{"project":"LitCovid-PD-CLO","denotations":[{"id":"T114","span":{"begin":210,"end":215},"obj":"http://purl.obolibrary.org/obo/CLO_0001012"},{"id":"T115","span":{"begin":222,"end":224},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T116","span":{"begin":266,"end":267},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T117","span":{"begin":284,"end":285},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T118","span":{"begin":332,"end":333},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T119","span":{"begin":350,"end":351},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T120","span":{"begin":384,"end":386},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T121","span":{"begin":410,"end":411},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T122","span":{"begin":460,"end":462},"obj":"http://purl.obolibrary.org/obo/CLO_0009421"},{"id":"T123","span":{"begin":460,"end":462},"obj":"http://purl.obolibrary.org/obo/CLO_0052184"},{"id":"T124","span":{"begin":460,"end":462},"obj":"http://purl.obolibrary.org/obo/CLO_0052185"},{"id":"T125","span":{"begin":475,"end":477},"obj":"http://purl.obolibrary.org/obo/CLO_0001627"},{"id":"T126","span":{"begin":480,"end":482},"obj":"http://purl.obolibrary.org/obo/CLO_0009421"},{"id":"T127","span":{"begin":480,"end":482},"obj":"http://purl.obolibrary.org/obo/CLO_0052184"},{"id":"T128","span":{"begin":480,"end":482},"obj":"http://purl.obolibrary.org/obo/CLO_0052185"},{"id":"T129","span":{"begin":665,"end":666},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T130","span":{"begin":714,"end":715},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T131","span":{"begin":732,"end":733},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T132","span":{"begin":793,"end":794},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T133","span":{"begin":1055,"end":1057},"obj":"http://purl.obolibrary.org/obo/CLO_0009421"},{"id":"T134","span":{"begin":1055,"end":1057},"obj":"http://purl.obolibrary.org/obo/CLO_0052184"},{"id":"T135","span":{"begin":1055,"end":1057},"obj":"http://purl.obolibrary.org/obo/CLO_0052185"},{"id":"T136","span":{"begin":1074,"end":1076},"obj":"http://purl.obolibrary.org/obo/CLO_0001627"},{"id":"T137","span":{"begin":1079,"end":1081},"obj":"http://purl.obolibrary.org/obo/CLO_0009421"},{"id":"T138","span":{"begin":1079,"end":1081},"obj":"http://purl.obolibrary.org/obo/CLO_0052184"},{"id":"T139","span":{"begin":1079,"end":1081},"obj":"http://purl.obolibrary.org/obo/CLO_0052185"},{"id":"T140","span":{"begin":1126,"end":1127},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T141","span":{"begin":1148,"end":1149},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T142","span":{"begin":1213,"end":1214},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T143","span":{"begin":1335,"end":1336},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T144","span":{"begin":1357,"end":1358},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T145","span":{"begin":1403,"end":1404},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T146","span":{"begin":1425,"end":1426},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T147","span":{"begin":1470,"end":1471},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T148","span":{"begin":1492,"end":1496},"obj":"http://purl.obolibrary.org/obo/CLO_0001599"},{"id":"T149","span":{"begin":1536,"end":1539},"obj":"http://purl.obolibrary.org/obo/CLO_0008954"},{"id":"T150","span":{"begin":1556,"end":1557},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T151","span":{"begin":1609,"end":1610},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T152","span":{"begin":1631,"end":1632},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T153","span":{"begin":1741,"end":1742},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T154","span":{"begin":1759,"end":1760},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T155","span":{"begin":1807,"end":1808},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T156","span":{"begin":1825,"end":1826},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T157","span":{"begin":1859,"end":1861},"obj":"http://purl.obolibrary.org/obo/CLO_0053794"},{"id":"T158","span":{"begin":1886,"end":1891},"obj":"http://purl.obolibrary.org/obo/CLO_0002087"},{"id":"T159","span":{"begin":1925,"end":1926},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T160","span":{"begin":1947,"end":1948},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T161","span":{"begin":2013,"end":2014},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T162","span":{"begin":2153,"end":2154},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T163","span":{"begin":2159,"end":2162},"obj":"http://purl.obolibrary.org/obo/CLO_0001311"},{"id":"T164","span":{"begin":2273,"end":2274},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T165","span":{"begin":2295,"end":2296},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T166","span":{"begin":2349,"end":2350},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T167","span":{"begin":2371,"end":2372},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Table 2. Minor nucleotide variant identified from WHU01 and WHU02 genomes.\nStrain Region Variant Start Poisiton End Position Length Change Coverage Polymorphism Type VariantFrequency (%) P-value\nWHU01 1a T 221 221 1 C → T 27 SNP (transition) 14.80 6.70E-07\nWHU01 1a A 1103 1103 1 T → A 119 SNP (transversion) 5.00 5.40E-14\nWHU01 1a A 1820 1820 1 G → A 97 SNP (transition) 11.30 2.00E-27\nWHU01 1a G 3916 3916 1 A → G 113 SNP (transition) 5.30 3.90E-14\nWHU01 1a TT 3919 3920 2 AA → TT 110 Substitution 5.50 1.30E-13\nWHU01 1a T 3923 3923 1 C → T 108 SNP (transition) 5.60 3.00E-14\nWHU01 1a T 5701 5701 1 C → T 247 SNP (transition) 5.30 5.70E-29\nWHU01 1a G 8892 8892 1 A → G 69 SNP (transition) 5.80 5.40E-10\nWHU01 1a A 8895 8895 1 T → A 65 SNP (transversion) 6.20 4.20E-10\nWHU01 1a G 8975 8975 1 A → G 59 SNP (transition) 5.10 6.50E-08\nWHU01 1a C 9114 9114 1 T → C 43 SNP (transition) 7.00 7.70E-07\nWHU01 1a 11,081 11,081 1 (T)8 → (T)7 78 Deletion (tandem repeat) 12.80 1.20E-20\nWHU01 1a C 13,074 13,074 1 T → C 110 SNP (transition) 5.50 3.30E-14\nWHU01 1a TT 13,282 13,283 2 AA → TT 78 → 79 Substitution 5.10 9.40E-10\nWHU01 1b A 15,079 15,079 1 C → A 57 SNP (transversion) 8.80 1.30E-13\nWHU01 1b T 18,252 18,252 1 A → T 192 SNP (transversion) 6.30 5.50E-23\nWHU01 1b T 19,163 19,163 1 C → → T 89 SNP (transition) 19.10 1.90E-47\nWHU01 1b A 20,234 20,234 1 C → A 67 SNP (transversion) 6.00 1.20E-09\nWHU01 S A 22,315 22,315 1 G → A 182 SNP (transition) 6.60 4.70E-28\nWHU01 S A 22,447 22,447 1 C → A 54 SNP (transversion) 5.60 2.00E-07\nWHU01 S C 24,322 24,322 1 A → C 325 SNP (transversion) 38.50 0\nWHU01 Other ORF A 26,313 26,313 1 G → A 29 SNP (transition) 10.30 1.50E-08\nWHU02 1a T 1100 1100 1 C → T 390 SNP (transition) 6.70 1.50E-56\nWHU02 1a A 1103 1103 1 T → A 391 SNP (transversion) 5.90 3.10E-51\nWHU02 1a A 1820 1820 1 G → A 382 SNP (transition) 5.20 1.00E-41\nWHU02 1a C 6823 6822 0 +C 129 Insertion 5.40 2.50E-16\nWHU02 1a A 10,778 10,778 1 T → A 323 SNP (transversion) 5.30 2.40E-32\nWHU02 1a T 11,366 11,366 1 A → T 250 SNP (transversion) 6.00 4.40E-31\nWHU02 1a T 11,562 11,562 1 C → T 397 SNP (transition) 13.60 1.30E-138\nWHU02 1b T 13,692 13,692 1 A → T 356 SNP (transversion) 7.00 1.60E-57\nWHU02 1b C 14,306 14,306 1 T → C 279 SNP (transition) 7.90 9.20E-50\nWHU02 1b A 14,315 14,315 1 G → A 244 SNP (transition) 10.70 6.90E-57\nWHU02 Other ORF A 26,504 26,504 1 G → A 63 SNP (transition) 6.30 1.50E-10"}
LitCovid-PD-CHEBI
{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T34","span":{"begin":15,"end":25},"obj":"Chemical"},{"id":"T35","span":{"begin":460,"end":462},"obj":"Chemical"},{"id":"T36","span":{"begin":475,"end":477},"obj":"Chemical"},{"id":"T38","span":{"begin":480,"end":482},"obj":"Chemical"},{"id":"T39","span":{"begin":1055,"end":1057},"obj":"Chemical"},{"id":"T40","span":{"begin":1074,"end":1076},"obj":"Chemical"},{"id":"T42","span":{"begin":1079,"end":1081},"obj":"Chemical"}],"attributes":[{"id":"A34","pred":"chebi_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"id":"A35","pred":"chebi_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/CHEBI_73665"},{"id":"A36","pred":"chebi_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/CHEBI_15843"},{"id":"A37","pred":"chebi_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/CHEBI_72816"},{"id":"A38","pred":"chebi_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/CHEBI_73665"},{"id":"A39","pred":"chebi_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/CHEBI_73665"},{"id":"A40","pred":"chebi_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/CHEBI_15843"},{"id":"A41","pred":"chebi_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/CHEBI_72816"},{"id":"A42","pred":"chebi_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/CHEBI_73665"}],"text":"Table 2. Minor nucleotide variant identified from WHU01 and WHU02 genomes.\nStrain Region Variant Start Poisiton End Position Length Change Coverage Polymorphism Type VariantFrequency (%) P-value\nWHU01 1a T 221 221 1 C → T 27 SNP (transition) 14.80 6.70E-07\nWHU01 1a A 1103 1103 1 T → A 119 SNP (transversion) 5.00 5.40E-14\nWHU01 1a A 1820 1820 1 G → A 97 SNP (transition) 11.30 2.00E-27\nWHU01 1a G 3916 3916 1 A → G 113 SNP (transition) 5.30 3.90E-14\nWHU01 1a TT 3919 3920 2 AA → TT 110 Substitution 5.50 1.30E-13\nWHU01 1a T 3923 3923 1 C → T 108 SNP (transition) 5.60 3.00E-14\nWHU01 1a T 5701 5701 1 C → T 247 SNP (transition) 5.30 5.70E-29\nWHU01 1a G 8892 8892 1 A → G 69 SNP (transition) 5.80 5.40E-10\nWHU01 1a A 8895 8895 1 T → A 65 SNP (transversion) 6.20 4.20E-10\nWHU01 1a G 8975 8975 1 A → G 59 SNP (transition) 5.10 6.50E-08\nWHU01 1a C 9114 9114 1 T → C 43 SNP (transition) 7.00 7.70E-07\nWHU01 1a 11,081 11,081 1 (T)8 → (T)7 78 Deletion (tandem repeat) 12.80 1.20E-20\nWHU01 1a C 13,074 13,074 1 T → C 110 SNP (transition) 5.50 3.30E-14\nWHU01 1a TT 13,282 13,283 2 AA → TT 78 → 79 Substitution 5.10 9.40E-10\nWHU01 1b A 15,079 15,079 1 C → A 57 SNP (transversion) 8.80 1.30E-13\nWHU01 1b T 18,252 18,252 1 A → T 192 SNP (transversion) 6.30 5.50E-23\nWHU01 1b T 19,163 19,163 1 C → → T 89 SNP (transition) 19.10 1.90E-47\nWHU01 1b A 20,234 20,234 1 C → A 67 SNP (transversion) 6.00 1.20E-09\nWHU01 S A 22,315 22,315 1 G → A 182 SNP (transition) 6.60 4.70E-28\nWHU01 S A 22,447 22,447 1 C → A 54 SNP (transversion) 5.60 2.00E-07\nWHU01 S C 24,322 24,322 1 A → C 325 SNP (transversion) 38.50 0\nWHU01 Other ORF A 26,313 26,313 1 G → A 29 SNP (transition) 10.30 1.50E-08\nWHU02 1a T 1100 1100 1 C → T 390 SNP (transition) 6.70 1.50E-56\nWHU02 1a A 1103 1103 1 T → A 391 SNP (transversion) 5.90 3.10E-51\nWHU02 1a A 1820 1820 1 G → A 382 SNP (transition) 5.20 1.00E-41\nWHU02 1a C 6823 6822 0 +C 129 Insertion 5.40 2.50E-16\nWHU02 1a A 10,778 10,778 1 T → A 323 SNP (transversion) 5.30 2.40E-32\nWHU02 1a T 11,366 11,366 1 A → T 250 SNP (transversion) 6.00 4.40E-31\nWHU02 1a T 11,562 11,562 1 C → T 397 SNP (transition) 13.60 1.30E-138\nWHU02 1b T 13,692 13,692 1 A → T 356 SNP (transversion) 7.00 1.60E-57\nWHU02 1b C 14,306 14,306 1 T → C 279 SNP (transition) 7.90 9.20E-50\nWHU02 1b A 14,315 14,315 1 G → A 244 SNP (transition) 10.70 6.90E-57\nWHU02 Other ORF A 26,504 26,504 1 G → A 63 SNP (transition) 6.30 1.50E-10"}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T126","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T127","span":{"begin":9,"end":74},"obj":"Sentence"},{"id":"T128","span":{"begin":75,"end":194},"obj":"Sentence"},{"id":"T129","span":{"begin":195,"end":256},"obj":"Sentence"},{"id":"T130","span":{"begin":257,"end":322},"obj":"Sentence"},{"id":"T131","span":{"begin":323,"end":386},"obj":"Sentence"},{"id":"T132","span":{"begin":387,"end":450},"obj":"Sentence"},{"id":"T133","span":{"begin":451,"end":513},"obj":"Sentence"},{"id":"T134","span":{"begin":514,"end":577},"obj":"Sentence"},{"id":"T135","span":{"begin":578,"end":641},"obj":"Sentence"},{"id":"T136","span":{"begin":642,"end":704},"obj":"Sentence"},{"id":"T137","span":{"begin":705,"end":769},"obj":"Sentence"},{"id":"T138","span":{"begin":770,"end":832},"obj":"Sentence"},{"id":"T139","span":{"begin":833,"end":895},"obj":"Sentence"},{"id":"T140","span":{"begin":896,"end":977},"obj":"Sentence"},{"id":"T141","span":{"begin":978,"end":1045},"obj":"Sentence"},{"id":"T142","span":{"begin":1046,"end":1116},"obj":"Sentence"},{"id":"T143","span":{"begin":1117,"end":1185},"obj":"Sentence"},{"id":"T144","span":{"begin":1186,"end":1255},"obj":"Sentence"},{"id":"T145","span":{"begin":1256,"end":1325},"obj":"Sentence"},{"id":"T146","span":{"begin":1326,"end":1394},"obj":"Sentence"},{"id":"T147","span":{"begin":1395,"end":1461},"obj":"Sentence"},{"id":"T148","span":{"begin":1462,"end":1529},"obj":"Sentence"},{"id":"T149","span":{"begin":1530,"end":1592},"obj":"Sentence"},{"id":"T150","span":{"begin":1593,"end":1667},"obj":"Sentence"},{"id":"T151","span":{"begin":1668,"end":1731},"obj":"Sentence"},{"id":"T152","span":{"begin":1732,"end":1797},"obj":"Sentence"},{"id":"T153","span":{"begin":1798,"end":1861},"obj":"Sentence"},{"id":"T154","span":{"begin":1862,"end":1915},"obj":"Sentence"},{"id":"T155","span":{"begin":1916,"end":1985},"obj":"Sentence"},{"id":"T156","span":{"begin":1986,"end":2055},"obj":"Sentence"},{"id":"T157","span":{"begin":2056,"end":2125},"obj":"Sentence"},{"id":"T158","span":{"begin":2126,"end":2195},"obj":"Sentence"},{"id":"T159","span":{"begin":2196,"end":2263},"obj":"Sentence"},{"id":"T160","span":{"begin":2264,"end":2332},"obj":"Sentence"},{"id":"T161","span":{"begin":2333,"end":2406},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 2. Minor nucleotide variant identified from WHU01 and WHU02 genomes.\nStrain Region Variant Start Poisiton End Position Length Change Coverage Polymorphism Type VariantFrequency (%) P-value\nWHU01 1a T 221 221 1 C → T 27 SNP (transition) 14.80 6.70E-07\nWHU01 1a A 1103 1103 1 T → A 119 SNP (transversion) 5.00 5.40E-14\nWHU01 1a A 1820 1820 1 G → A 97 SNP (transition) 11.30 2.00E-27\nWHU01 1a G 3916 3916 1 A → G 113 SNP (transition) 5.30 3.90E-14\nWHU01 1a TT 3919 3920 2 AA → TT 110 Substitution 5.50 1.30E-13\nWHU01 1a T 3923 3923 1 C → T 108 SNP (transition) 5.60 3.00E-14\nWHU01 1a T 5701 5701 1 C → T 247 SNP (transition) 5.30 5.70E-29\nWHU01 1a G 8892 8892 1 A → G 69 SNP (transition) 5.80 5.40E-10\nWHU01 1a A 8895 8895 1 T → A 65 SNP (transversion) 6.20 4.20E-10\nWHU01 1a G 8975 8975 1 A → G 59 SNP (transition) 5.10 6.50E-08\nWHU01 1a C 9114 9114 1 T → C 43 SNP (transition) 7.00 7.70E-07\nWHU01 1a 11,081 11,081 1 (T)8 → (T)7 78 Deletion (tandem repeat) 12.80 1.20E-20\nWHU01 1a C 13,074 13,074 1 T → C 110 SNP (transition) 5.50 3.30E-14\nWHU01 1a TT 13,282 13,283 2 AA → TT 78 → 79 Substitution 5.10 9.40E-10\nWHU01 1b A 15,079 15,079 1 C → A 57 SNP (transversion) 8.80 1.30E-13\nWHU01 1b T 18,252 18,252 1 A → T 192 SNP (transversion) 6.30 5.50E-23\nWHU01 1b T 19,163 19,163 1 C → → T 89 SNP (transition) 19.10 1.90E-47\nWHU01 1b A 20,234 20,234 1 C → A 67 SNP (transversion) 6.00 1.20E-09\nWHU01 S A 22,315 22,315 1 G → A 182 SNP (transition) 6.60 4.70E-28\nWHU01 S A 22,447 22,447 1 C → A 54 SNP (transversion) 5.60 2.00E-07\nWHU01 S C 24,322 24,322 1 A → C 325 SNP (transversion) 38.50 0\nWHU01 Other ORF A 26,313 26,313 1 G → A 29 SNP (transition) 10.30 1.50E-08\nWHU02 1a T 1100 1100 1 C → T 390 SNP (transition) 6.70 1.50E-56\nWHU02 1a A 1103 1103 1 T → A 391 SNP (transversion) 5.90 3.10E-51\nWHU02 1a A 1820 1820 1 G → A 382 SNP (transition) 5.20 1.00E-41\nWHU02 1a C 6823 6822 0 +C 129 Insertion 5.40 2.50E-16\nWHU02 1a A 10,778 10,778 1 T → A 323 SNP (transversion) 5.30 2.40E-32\nWHU02 1a T 11,366 11,366 1 A → T 250 SNP (transversion) 6.00 4.40E-31\nWHU02 1a T 11,562 11,562 1 C → T 397 SNP (transition) 13.60 1.30E-138\nWHU02 1b T 13,692 13,692 1 A → T 356 SNP (transversion) 7.00 1.60E-57\nWHU02 1b C 14,306 14,306 1 T → C 279 SNP (transition) 7.90 9.20E-50\nWHU02 1b A 14,315 14,315 1 G → A 244 SNP (transition) 10.70 6.90E-57\nWHU02 Other ORF A 26,504 26,504 1 G → A 63 SNP (transition) 6.30 1.50E-10"}