PMC:7033720 / 14028-16434 JSONTXT

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    LitCovid-PubTator

    Table 2. Minor nucleotide variant identified from WHU01 and WHU02 genomes. Strain Region Variant Start Poisiton End Position Length Change Coverage Polymorphism Type VariantFrequency (%) P-value WHU01 1a T 221 221 1 C → T 27 SNP (transition) 14.80 6.70E-07 WHU01 1a A 1103 1103 1 T → A 119 SNP (transversion) 5.00 5.40E-14 WHU01 1a A 1820 1820 1 G → A 97 SNP (transition) 11.30 2.00E-27 WHU01 1a G 3916 3916 1 A → G 113 SNP (transition) 5.30 3.90E-14 WHU01 1a TT 3919 3920 2 AA → TT 110 Substitution 5.50 1.30E-13 WHU01 1a T 3923 3923 1 C → T 108 SNP (transition) 5.60 3.00E-14 WHU01 1a T 5701 5701 1 C → T 247 SNP (transition) 5.30 5.70E-29 WHU01 1a G 8892 8892 1 A → G 69 SNP (transition) 5.80 5.40E-10 WHU01 1a A 8895 8895 1 T → A 65 SNP (transversion) 6.20 4.20E-10 WHU01 1a G 8975 8975 1 A → G 59 SNP (transition) 5.10 6.50E-08 WHU01 1a C 9114 9114 1 T → C 43 SNP (transition) 7.00 7.70E-07 WHU01 1a   11,081 11,081 1 (T)8 → (T)7 78 Deletion (tandem repeat) 12.80 1.20E-20 WHU01 1a C 13,074 13,074 1 T → C 110 SNP (transition) 5.50 3.30E-14 WHU01 1a TT 13,282 13,283 2 AA → TT 78 → 79 Substitution 5.10 9.40E-10 WHU01 1b A 15,079 15,079 1 C → A 57 SNP (transversion) 8.80 1.30E-13 WHU01 1b T 18,252 18,252 1 A → T 192 SNP (transversion) 6.30 5.50E-23 WHU01 1b T 19,163 19,163 1 C → → T 89 SNP (transition) 19.10 1.90E-47 WHU01 1b A 20,234 20,234 1 C → A 67 SNP (transversion) 6.00 1.20E-09 WHU01 S A 22,315 22,315 1 G → A 182 SNP (transition) 6.60 4.70E-28 WHU01 S A 22,447 22,447 1 C → A 54 SNP (transversion) 5.60 2.00E-07 WHU01 S C 24,322 24,322 1 A → C 325 SNP (transversion) 38.50 0 WHU01 Other ORF A 26,313 26,313 1 G → A 29 SNP (transition) 10.30 1.50E-08 WHU02 1a T 1100 1100 1 C → T 390 SNP (transition) 6.70 1.50E-56 WHU02 1a A 1103 1103 1 T → A 391 SNP (transversion) 5.90 3.10E-51 WHU02 1a A 1820 1820 1 G → A 382 SNP (transition) 5.20 1.00E-41 WHU02 1a C 6823 6822 0 +C 129 Insertion 5.40 2.50E-16 WHU02 1a A 10,778 10,778 1 T → A 323 SNP (transversion) 5.30 2.40E-32 WHU02 1a T 11,366 11,366 1 A → T 250 SNP (transversion) 6.00 4.40E-31 WHU02 1a T 11,562 11,562 1 C → T 397 SNP (transition) 13.60 1.30E-138 WHU02 1b T 13,692 13,692 1 A → T 356 SNP (transversion) 7.00 1.60E-57 WHU02 1b C 14,306 14,306 1 T → C 279 SNP (transition) 7.90 9.20E-50 WHU02 1b A 14,315 14,315 1 G → A 244 SNP (transition) 10.70 6.90E-57 WHU02 Other ORF A 26,504 26,504 1 G → A 63 SNP (transition) 6.30 1.50E-10

    LitCovid-PD-FMA-UBERON

    Table 2. Minor nucleotide variant identified from WHU01 and WHU02 genomes. Strain Region Variant Start Poisiton End Position Length Change Coverage Polymorphism Type VariantFrequency (%) P-value WHU01 1a T 221 221 1 C → T 27 SNP (transition) 14.80 6.70E-07 WHU01 1a A 1103 1103 1 T → A 119 SNP (transversion) 5.00 5.40E-14 WHU01 1a A 1820 1820 1 G → A 97 SNP (transition) 11.30 2.00E-27 WHU01 1a G 3916 3916 1 A → G 113 SNP (transition) 5.30 3.90E-14 WHU01 1a TT 3919 3920 2 AA → TT 110 Substitution 5.50 1.30E-13 WHU01 1a T 3923 3923 1 C → T 108 SNP (transition) 5.60 3.00E-14 WHU01 1a T 5701 5701 1 C → T 247 SNP (transition) 5.30 5.70E-29 WHU01 1a G 8892 8892 1 A → G 69 SNP (transition) 5.80 5.40E-10 WHU01 1a A 8895 8895 1 T → A 65 SNP (transversion) 6.20 4.20E-10 WHU01 1a G 8975 8975 1 A → G 59 SNP (transition) 5.10 6.50E-08 WHU01 1a C 9114 9114 1 T → C 43 SNP (transition) 7.00 7.70E-07 WHU01 1a   11,081 11,081 1 (T)8 → (T)7 78 Deletion (tandem repeat) 12.80 1.20E-20 WHU01 1a C 13,074 13,074 1 T → C 110 SNP (transition) 5.50 3.30E-14 WHU01 1a TT 13,282 13,283 2 AA → TT 78 → 79 Substitution 5.10 9.40E-10 WHU01 1b A 15,079 15,079 1 C → A 57 SNP (transversion) 8.80 1.30E-13 WHU01 1b T 18,252 18,252 1 A → T 192 SNP (transversion) 6.30 5.50E-23 WHU01 1b T 19,163 19,163 1 C → → T 89 SNP (transition) 19.10 1.90E-47 WHU01 1b A 20,234 20,234 1 C → A 67 SNP (transversion) 6.00 1.20E-09 WHU01 S A 22,315 22,315 1 G → A 182 SNP (transition) 6.60 4.70E-28 WHU01 S A 22,447 22,447 1 C → A 54 SNP (transversion) 5.60 2.00E-07 WHU01 S C 24,322 24,322 1 A → C 325 SNP (transversion) 38.50 0 WHU01 Other ORF A 26,313 26,313 1 G → A 29 SNP (transition) 10.30 1.50E-08 WHU02 1a T 1100 1100 1 C → T 390 SNP (transition) 6.70 1.50E-56 WHU02 1a A 1103 1103 1 T → A 391 SNP (transversion) 5.90 3.10E-51 WHU02 1a A 1820 1820 1 G → A 382 SNP (transition) 5.20 1.00E-41 WHU02 1a C 6823 6822 0 +C 129 Insertion 5.40 2.50E-16 WHU02 1a A 10,778 10,778 1 T → A 323 SNP (transversion) 5.30 2.40E-32 WHU02 1a T 11,366 11,366 1 A → T 250 SNP (transversion) 6.00 4.40E-31 WHU02 1a T 11,562 11,562 1 C → T 397 SNP (transition) 13.60 1.30E-138 WHU02 1b T 13,692 13,692 1 A → T 356 SNP (transversion) 7.00 1.60E-57 WHU02 1b C 14,306 14,306 1 T → C 279 SNP (transition) 7.90 9.20E-50 WHU02 1b A 14,315 14,315 1 G → A 244 SNP (transition) 10.70 6.90E-57 WHU02 Other ORF A 26,504 26,504 1 G → A 63 SNP (transition) 6.30 1.50E-10

    LitCovid-PD-CLO

    Table 2. Minor nucleotide variant identified from WHU01 and WHU02 genomes. Strain Region Variant Start Poisiton End Position Length Change Coverage Polymorphism Type VariantFrequency (%) P-value WHU01 1a T 221 221 1 C → T 27 SNP (transition) 14.80 6.70E-07 WHU01 1a A 1103 1103 1 T → A 119 SNP (transversion) 5.00 5.40E-14 WHU01 1a A 1820 1820 1 G → A 97 SNP (transition) 11.30 2.00E-27 WHU01 1a G 3916 3916 1 A → G 113 SNP (transition) 5.30 3.90E-14 WHU01 1a TT 3919 3920 2 AA → TT 110 Substitution 5.50 1.30E-13 WHU01 1a T 3923 3923 1 C → T 108 SNP (transition) 5.60 3.00E-14 WHU01 1a T 5701 5701 1 C → T 247 SNP (transition) 5.30 5.70E-29 WHU01 1a G 8892 8892 1 A → G 69 SNP (transition) 5.80 5.40E-10 WHU01 1a A 8895 8895 1 T → A 65 SNP (transversion) 6.20 4.20E-10 WHU01 1a G 8975 8975 1 A → G 59 SNP (transition) 5.10 6.50E-08 WHU01 1a C 9114 9114 1 T → C 43 SNP (transition) 7.00 7.70E-07 WHU01 1a   11,081 11,081 1 (T)8 → (T)7 78 Deletion (tandem repeat) 12.80 1.20E-20 WHU01 1a C 13,074 13,074 1 T → C 110 SNP (transition) 5.50 3.30E-14 WHU01 1a TT 13,282 13,283 2 AA → TT 78 → 79 Substitution 5.10 9.40E-10 WHU01 1b A 15,079 15,079 1 C → A 57 SNP (transversion) 8.80 1.30E-13 WHU01 1b T 18,252 18,252 1 A → T 192 SNP (transversion) 6.30 5.50E-23 WHU01 1b T 19,163 19,163 1 C → → T 89 SNP (transition) 19.10 1.90E-47 WHU01 1b A 20,234 20,234 1 C → A 67 SNP (transversion) 6.00 1.20E-09 WHU01 S A 22,315 22,315 1 G → A 182 SNP (transition) 6.60 4.70E-28 WHU01 S A 22,447 22,447 1 C → A 54 SNP (transversion) 5.60 2.00E-07 WHU01 S C 24,322 24,322 1 A → C 325 SNP (transversion) 38.50 0 WHU01 Other ORF A 26,313 26,313 1 G → A 29 SNP (transition) 10.30 1.50E-08 WHU02 1a T 1100 1100 1 C → T 390 SNP (transition) 6.70 1.50E-56 WHU02 1a A 1103 1103 1 T → A 391 SNP (transversion) 5.90 3.10E-51 WHU02 1a A 1820 1820 1 G → A 382 SNP (transition) 5.20 1.00E-41 WHU02 1a C 6823 6822 0 +C 129 Insertion 5.40 2.50E-16 WHU02 1a A 10,778 10,778 1 T → A 323 SNP (transversion) 5.30 2.40E-32 WHU02 1a T 11,366 11,366 1 A → T 250 SNP (transversion) 6.00 4.40E-31 WHU02 1a T 11,562 11,562 1 C → T 397 SNP (transition) 13.60 1.30E-138 WHU02 1b T 13,692 13,692 1 A → T 356 SNP (transversion) 7.00 1.60E-57 WHU02 1b C 14,306 14,306 1 T → C 279 SNP (transition) 7.90 9.20E-50 WHU02 1b A 14,315 14,315 1 G → A 244 SNP (transition) 10.70 6.90E-57 WHU02 Other ORF A 26,504 26,504 1 G → A 63 SNP (transition) 6.30 1.50E-10

    LitCovid-PD-CHEBI

    Table 2. Minor nucleotide variant identified from WHU01 and WHU02 genomes. Strain Region Variant Start Poisiton End Position Length Change Coverage Polymorphism Type VariantFrequency (%) P-value WHU01 1a T 221 221 1 C → T 27 SNP (transition) 14.80 6.70E-07 WHU01 1a A 1103 1103 1 T → A 119 SNP (transversion) 5.00 5.40E-14 WHU01 1a A 1820 1820 1 G → A 97 SNP (transition) 11.30 2.00E-27 WHU01 1a G 3916 3916 1 A → G 113 SNP (transition) 5.30 3.90E-14 WHU01 1a TT 3919 3920 2 AA → TT 110 Substitution 5.50 1.30E-13 WHU01 1a T 3923 3923 1 C → T 108 SNP (transition) 5.60 3.00E-14 WHU01 1a T 5701 5701 1 C → T 247 SNP (transition) 5.30 5.70E-29 WHU01 1a G 8892 8892 1 A → G 69 SNP (transition) 5.80 5.40E-10 WHU01 1a A 8895 8895 1 T → A 65 SNP (transversion) 6.20 4.20E-10 WHU01 1a G 8975 8975 1 A → G 59 SNP (transition) 5.10 6.50E-08 WHU01 1a C 9114 9114 1 T → C 43 SNP (transition) 7.00 7.70E-07 WHU01 1a   11,081 11,081 1 (T)8 → (T)7 78 Deletion (tandem repeat) 12.80 1.20E-20 WHU01 1a C 13,074 13,074 1 T → C 110 SNP (transition) 5.50 3.30E-14 WHU01 1a TT 13,282 13,283 2 AA → TT 78 → 79 Substitution 5.10 9.40E-10 WHU01 1b A 15,079 15,079 1 C → A 57 SNP (transversion) 8.80 1.30E-13 WHU01 1b T 18,252 18,252 1 A → T 192 SNP (transversion) 6.30 5.50E-23 WHU01 1b T 19,163 19,163 1 C → → T 89 SNP (transition) 19.10 1.90E-47 WHU01 1b A 20,234 20,234 1 C → A 67 SNP (transversion) 6.00 1.20E-09 WHU01 S A 22,315 22,315 1 G → A 182 SNP (transition) 6.60 4.70E-28 WHU01 S A 22,447 22,447 1 C → A 54 SNP (transversion) 5.60 2.00E-07 WHU01 S C 24,322 24,322 1 A → C 325 SNP (transversion) 38.50 0 WHU01 Other ORF A 26,313 26,313 1 G → A 29 SNP (transition) 10.30 1.50E-08 WHU02 1a T 1100 1100 1 C → T 390 SNP (transition) 6.70 1.50E-56 WHU02 1a A 1103 1103 1 T → A 391 SNP (transversion) 5.90 3.10E-51 WHU02 1a A 1820 1820 1 G → A 382 SNP (transition) 5.20 1.00E-41 WHU02 1a C 6823 6822 0 +C 129 Insertion 5.40 2.50E-16 WHU02 1a A 10,778 10,778 1 T → A 323 SNP (transversion) 5.30 2.40E-32 WHU02 1a T 11,366 11,366 1 A → T 250 SNP (transversion) 6.00 4.40E-31 WHU02 1a T 11,562 11,562 1 C → T 397 SNP (transition) 13.60 1.30E-138 WHU02 1b T 13,692 13,692 1 A → T 356 SNP (transversion) 7.00 1.60E-57 WHU02 1b C 14,306 14,306 1 T → C 279 SNP (transition) 7.90 9.20E-50 WHU02 1b A 14,315 14,315 1 G → A 244 SNP (transition) 10.70 6.90E-57 WHU02 Other ORF A 26,504 26,504 1 G → A 63 SNP (transition) 6.30 1.50E-10

    LitCovid-sentences

    Table 2. Minor nucleotide variant identified from WHU01 and WHU02 genomes. Strain Region Variant Start Poisiton End Position Length Change Coverage Polymorphism Type VariantFrequency (%) P-value WHU01 1a T 221 221 1 C → T 27 SNP (transition) 14.80 6.70E-07 WHU01 1a A 1103 1103 1 T → A 119 SNP (transversion) 5.00 5.40E-14 WHU01 1a A 1820 1820 1 G → A 97 SNP (transition) 11.30 2.00E-27 WHU01 1a G 3916 3916 1 A → G 113 SNP (transition) 5.30 3.90E-14 WHU01 1a TT 3919 3920 2 AA → TT 110 Substitution 5.50 1.30E-13 WHU01 1a T 3923 3923 1 C → T 108 SNP (transition) 5.60 3.00E-14 WHU01 1a T 5701 5701 1 C → T 247 SNP (transition) 5.30 5.70E-29 WHU01 1a G 8892 8892 1 A → G 69 SNP (transition) 5.80 5.40E-10 WHU01 1a A 8895 8895 1 T → A 65 SNP (transversion) 6.20 4.20E-10 WHU01 1a G 8975 8975 1 A → G 59 SNP (transition) 5.10 6.50E-08 WHU01 1a C 9114 9114 1 T → C 43 SNP (transition) 7.00 7.70E-07 WHU01 1a   11,081 11,081 1 (T)8 → (T)7 78 Deletion (tandem repeat) 12.80 1.20E-20 WHU01 1a C 13,074 13,074 1 T → C 110 SNP (transition) 5.50 3.30E-14 WHU01 1a TT 13,282 13,283 2 AA → TT 78 → 79 Substitution 5.10 9.40E-10 WHU01 1b A 15,079 15,079 1 C → A 57 SNP (transversion) 8.80 1.30E-13 WHU01 1b T 18,252 18,252 1 A → T 192 SNP (transversion) 6.30 5.50E-23 WHU01 1b T 19,163 19,163 1 C → → T 89 SNP (transition) 19.10 1.90E-47 WHU01 1b A 20,234 20,234 1 C → A 67 SNP (transversion) 6.00 1.20E-09 WHU01 S A 22,315 22,315 1 G → A 182 SNP (transition) 6.60 4.70E-28 WHU01 S A 22,447 22,447 1 C → A 54 SNP (transversion) 5.60 2.00E-07 WHU01 S C 24,322 24,322 1 A → C 325 SNP (transversion) 38.50 0 WHU01 Other ORF A 26,313 26,313 1 G → A 29 SNP (transition) 10.30 1.50E-08 WHU02 1a T 1100 1100 1 C → T 390 SNP (transition) 6.70 1.50E-56 WHU02 1a A 1103 1103 1 T → A 391 SNP (transversion) 5.90 3.10E-51 WHU02 1a A 1820 1820 1 G → A 382 SNP (transition) 5.20 1.00E-41 WHU02 1a C 6823 6822 0 +C 129 Insertion 5.40 2.50E-16 WHU02 1a A 10,778 10,778 1 T → A 323 SNP (transversion) 5.30 2.40E-32 WHU02 1a T 11,366 11,366 1 A → T 250 SNP (transversion) 6.00 4.40E-31 WHU02 1a T 11,562 11,562 1 C → T 397 SNP (transition) 13.60 1.30E-138 WHU02 1b T 13,692 13,692 1 A → T 356 SNP (transversion) 7.00 1.60E-57 WHU02 1b C 14,306 14,306 1 T → C 279 SNP (transition) 7.90 9.20E-50 WHU02 1b A 14,315 14,315 1 G → A 244 SNP (transition) 10.70 6.90E-57 WHU02 Other ORF A 26,504 26,504 1 G → A 63 SNP (transition) 6.30 1.50E-10