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PMC:7033706 / 1467-3065 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
46 1038-1043 Gene denotes spike Gene:43740568
47 1528-1529 Gene denotes S Gene:43740568
48 1282-1283 Gene denotes S Gene:43740568
49 1095-1096 Gene denotes S Gene:43740568
50 1028-1037 Species denotes 2019-nCoV Tax:2697049
51 1105-1114 Species denotes 2019-nCoV Tax:2697049
52 1163-1171 Species denotes SARS-CoV Tax:694009
53 1182-1195 Species denotes coronaviruses Tax:11118
54 1295-1304 Species denotes 2019-nCoV Tax:2697049
55 1518-1527 Species denotes 2019-nCoV Tax:2697049
69 63-72 Species denotes 2019-nCoV Tax:2697049
70 194-198 Species denotes nCoV Tax:2697049
71 227-252 Species denotes bat SARS-like coronavirus Tax:1508227
72 355-363 Species denotes SARS-CoV Tax:694009
73 397-406 Species denotes 2019-nCoV Tax:2697049
74 423-438 Species denotes betacoronavirus Tax:694002
75 517-525 Species denotes SARS-CoV Tax:694009
76 554-557 Species denotes CoV Tax:11118
77 595-609 Species denotes horseshoe bats Tax:49442
78 729-733 Species denotes rats Tax:10116
79 825-834 Species denotes 2019-nCoV Tax:2697049
80 117-125 CellLine denotes MN908947 CVCL:U508
81 291-301 CellLine denotes MG772934.1 CVCL:8732

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 172-176 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T2 1044-1051 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T3 1060-1064 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T4 1097-1101 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T5 1284-1291 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T6 1474-1485 Body_part denotes cytoplasmic http://purl.org/sig/ont/fma/fma66835

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T4 231-235 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T5 355-363 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 517-525 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 1163-1171 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 1326-1329 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T12 172-176 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T13 227-230 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T14 260-263 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T15 447-448 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T16 454-457 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T17 477-480 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T18 496-499 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T19 547-550 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T20 605-609 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T21 780-784 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T22 794-801 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T23 858-862 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T24 871-878 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T25 923-926 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T26 1060-1064 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T27 1067-1068 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T28 1097-1101 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T29 1129-1132 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T30 1146-1149 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T31 1228-1229 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T32 1310-1316 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T33 1317-1324 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T34 1391-1398 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T35 1470-1472 http://purl.obolibrary.org/obo/PR_000005794 denotes CP

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 264-266 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T2 481-483 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T3 500-502 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T4 551-553 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T5 1044-1051 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T6 1133-1135 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T7 1150-1152 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T8 1284-1291 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T9 1306-1308 Chemical denotes SP http://purl.obolibrary.org/obo/CHEBI_74820
T10 1317-1324 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T11 1380-1382 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T12 1391-1398 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T13 1444-1446 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T15 1470-1472 Chemical denotes CP http://purl.obolibrary.org/obo/CHEBI_3380|http://purl.obolibrary.org/obo/CHEBI_73461
T17 1587-1597 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T11 0-116 Sentence denotes Research scientists have released the full genomic sequence of 2019-nCoV, such as Wuhan-Hu-1 (GenBank, accession no.
T12 117-127 Sentence denotes MN908947).
T13 128-290 Sentence denotes The phylogenetic analysis revealed that the gene sequence of 2016-nCoV is 89% identical to that of bat SARS-like coronavirus ZXC21 (bat-SL-CoVZXC21, accession no.
T14 291-541 Sentence denotes MG772934.1) and ZC45 (MG772933.1), and 82% identical to that of SARS-CoV Tor2 (JX163927), suggesting that 2019-nCoV also belongs to betacoronavirus Lineage B, but has closer homology to bat-SL-CoVZC45 and bat-SL-CoVZXC21 than SARS-CoV [2] (Figure 1).
T15 542-752 Sentence denotes Both bat-SL-CoV ZC45 and ZXC21 were found in Chinese horseshoe bats (Rhinolopus sinicus) in Zhoushan city of Zhejiang Province, China between 2015 and 2017 [3], which can infect suckling rats and cause disease.
T16 753-979 Sentence denotes Given that there were some bats and live animals in the seafood market, 2019-nCoV may be originated from bats or live animals exposure to the materials contaminated with bat droppings in the seafood market or surrounding area.
T17 980-989 Sentence denotes Figure 1.
T18 990-1305 Sentence denotes Analysis of the functional domains in 2019-nCoV spike protein and its gene. (A) Phylogenetic analysis of S gene of 2019-nCoV (Wuhan-Hu-1), bat-SL-CoVZXC21, bat-SL-CoVZXC45, SARS-CoV and other coronaviruses using Neighbor-Joining method. (B) The representative scheme of functional domains in S protein of 2019-nCoV.
T19 1306-1598 Sentence denotes SP, signal peptide; NTD, N-terminal domain; RBD, receptor-binding domain; FP, fusion peptide, HR1, heptad repeat 1; HR2, heptad repeat 2; TM, transmembrane domain; CP, cytoplasmic domain. (C) The target sites in 2019-nCoV S for development of vaccines, antibodies and fusion/entry inhibitors.