PMC:7033698 / 8143-9181
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T64 | 99-102 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T65 | 332-334 | Body_part | denotes | V1 | http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614 |
| T67 | 345-348 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T68 | 358-360 | Body_part | denotes | V1 | http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614 |
| T70 | 551-558 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T71 | 600-603 | Body_part | denotes | Gag | http://purl.org/sig/ont/fma/fma63011 |
| T72 | 604-611 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T73 | 615-618 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T74 | 801-808 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T75 | 935-938 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T80 | 46-48 | http://purl.obolibrary.org/obo/CLO_0001627 | denotes | AA |
| T81 | 181-182 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T82 | 277-280 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T83 | 953-954 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T15 | 46-48 | Chemical | denotes | AA | http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816 |
| T17 | 183-185 | Chemical | denotes | LE | http://purl.obolibrary.org/obo/CHEBI_74531 |
| T18 | 551-558 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T19 | 604-611 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T20 | 801-808 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T70 | 0-207 | Sentence | denotes | Third, insertions 1 and 2 in 2019-nCoV have 6-AA motifs identical to those in V4 and V5 of certain HIV-1 gp120 isolates, which are structurally close to each other but separated by a LE loop (Figure 1C) [9]. |
| T71 | 208-357 | Sentence | denotes | However, insertion 3 located between insertions 1 and 2 in 2019-nCoV has sequences similar (with deletions) to those in the V1 region of HIV-1 gp120. |
| T72 | 358-574 | Sentence | denotes | V1 is far away from V4 and V5 on the opposite side of gp120, which should not interact with V4/V5 in gp120 (Figure 1C) but is now inserted between V4 and V5 in the modelled the 2019-nCoV spike protein structure [10]. |
| T73 | 575-661 | Sentence | denotes | Insertion 4 was found in Gag protein of HIV-1 that is not associated with viral entry. |
| T74 | 662-821 | Sentence | denotes | This insertion is located too far to be considered to form the same structural unit with the other three insertions in the 2019-nCoV spike protein (Figure 1C). |
| T75 | 822-1038 | Sentence | denotes | We do not see any selection benefit or rationale for 2019-nCoV to obtain and mix structurally unrelated parts of HIV-1 to generate a unique structure for its enhanced receptor binding as indicated by the authors [8]. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 237 | 105-110 | Gene | denotes | gp120 | Gene:3700 |
| 238 | 351-356 | Gene | denotes | gp120 | Gene:3700 |
| 239 | 412-417 | Gene | denotes | gp120 | Gene:3700 |
| 240 | 459-464 | Gene | denotes | gp120 | Gene:3700 |
| 241 | 600-603 | Gene | denotes | Gag | Gene:155030 |
| 242 | 795-800 | Gene | denotes | spike | Gene:43740568 |
| 243 | 545-550 | Gene | denotes | spike | Gene:43740568 |
| 244 | 29-38 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 245 | 99-104 | Species | denotes | HIV-1 | Tax:11676 |
| 246 | 267-276 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 247 | 345-350 | Species | denotes | HIV-1 | Tax:11676 |
| 248 | 535-544 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 249 | 615-620 | Species | denotes | HIV-1 | Tax:11676 |
| 250 | 785-794 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 251 | 875-884 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 252 | 935-940 | Species | denotes | HIV-1 | Tax:11676 |
| 253 | 217-226 | Species | denotes | insertion | Tax:2673 |
| 254 | 575-584 | Species | denotes | Insertion | Tax:2673 |
| 255 | 667-676 | Species | denotes | insertion | Tax:2673 |