PMC:7033263 / 8790-9976 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7033263","sourcedb":"PMC","sourceid":"7033263","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7033263","text":"Microbiological testing\nNasopharyngeal swab or sputum samples of patients were available for testing by specific RT-PCR assays for 2019-nCoV to detect the highly conserved RdRp and variable S gene. The cycle threshold values of the sputum samples were 8–13 cycles earlier than those of throat swabs, indicating higher viral loads detected in the lower respiratory tract. It is consistent with the observations in patients with MERS who had higher viral loads in lower respiratory tract samples than in upper respiratory tract samples [22].\nSerum samples for 2019-nCoV which might indicate some virus spillover from the more severely infected lung into the systemic circulation, as previously reported in patients with SARS [23]. However, the first case of 2019-nCoV in the United States report the stool and respiratory specimens from the patients tested positive by RT-PCR for 2019-nCoV, whereas the serum remained negative [24].\nImportantly, the ground glass changes on chest CT scan appeared earlier than the positive for RT-PCR test in some cases. Repeat testing of nasopharyngeal swab or sputum samples are recommended in clinical suspected cases with an initially negative result.","divisions":[{"label":"title","span":{"begin":0,"end":23}},{"label":"p","span":{"begin":24,"end":539}},{"label":"p","span":{"begin":540,"end":930}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T30","span":{"begin":47,"end":53},"obj":"Body_part"},{"id":"T31","span":{"begin":192,"end":196},"obj":"Body_part"},{"id":"T32","span":{"begin":232,"end":238},"obj":"Body_part"},{"id":"T33","span":{"begin":286,"end":292},"obj":"Body_part"},{"id":"T34","span":{"begin":346,"end":369},"obj":"Body_part"},{"id":"T35","span":{"begin":462,"end":485},"obj":"Body_part"},{"id":"T36","span":{"begin":502,"end":525},"obj":"Body_part"},{"id":"T37","span":{"begin":540,"end":545},"obj":"Body_part"},{"id":"T38","span":{"begin":642,"end":646},"obj":"Body_part"},{"id":"T39","span":{"begin":798,"end":803},"obj":"Body_part"},{"id":"T40","span":{"begin":901,"end":906},"obj":"Body_part"},{"id":"T41","span":{"begin":972,"end":977},"obj":"Body_part"},{"id":"T42","span":{"begin":1093,"end":1099},"obj":"Body_part"}],"attributes":[{"id":"A30","pred":"fma_id","subj":"T30","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A31","pred":"fma_id","subj":"T31","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A32","pred":"fma_id","subj":"T32","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A33","pred":"fma_id","subj":"T33","obj":"http://purl.org/sig/ont/fma/fma228738"},{"id":"A34","pred":"fma_id","subj":"T34","obj":"http://purl.org/sig/ont/fma/fma45662"},{"id":"A35","pred":"fma_id","subj":"T35","obj":"http://purl.org/sig/ont/fma/fma45662"},{"id":"A36","pred":"fma_id","subj":"T36","obj":"http://purl.org/sig/ont/fma/fma45661"},{"id":"A37","pred":"fma_id","subj":"T37","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A38","pred":"fma_id","subj":"T38","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A39","pred":"fma_id","subj":"T39","obj":"http://purl.org/sig/ont/fma/fma64183"},{"id":"A40","pred":"fma_id","subj":"T40","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A41","pred":"fma_id","subj":"T41","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A42","pred":"fma_id","subj":"T42","obj":"http://purl.org/sig/ont/fma/fma312401"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T35","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T36","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T37","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T38","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T39","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T40","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T41","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T42","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T14","span":{"begin":47,"end":53},"obj":"Body_part"},{"id":"T15","span":{"begin":232,"end":238},"obj":"Body_part"},{"id":"T16","span":{"begin":286,"end":292},"obj":"Body_part"},{"id":"T17","span":{"begin":346,"end":369},"obj":"Body_part"},{"id":"T18","span":{"begin":352,"end":369},"obj":"Body_part"},{"id":"T19","span":{"begin":462,"end":485},"obj":"Body_part"},{"id":"T20","span":{"begin":468,"end":485},"obj":"Body_part"},{"id":"T21","span":{"begin":502,"end":525},"obj":"Body_part"},{"id":"T22","span":{"begin":508,"end":525},"obj":"Body_part"},{"id":"T23","span":{"begin":540,"end":545},"obj":"Body_part"},{"id":"T24","span":{"begin":642,"end":646},"obj":"Body_part"},{"id":"T25","span":{"begin":798,"end":803},"obj":"Body_part"},{"id":"T26","span":{"begin":901,"end":906},"obj":"Body_part"},{"id":"T27","span":{"begin":972,"end":977},"obj":"Body_part"},{"id":"T28","span":{"begin":1093,"end":1099},"obj":"Body_part"}],"attributes":[{"id":"A14","pred":"uberon_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A15","pred":"uberon_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A16","pred":"uberon_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/UBERON_0000341"},{"id":"A17","pred":"uberon_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/UBERON_0001558"},{"id":"A18","pred":"uberon_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/UBERON_0000065"},{"id":"A19","pred":"uberon_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/UBERON_0001558"},{"id":"A20","pred":"uberon_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/UBERON_0000065"},{"id":"A21","pred":"uberon_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/UBERON_0001557"},{"id":"A22","pred":"uberon_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/UBERON_0000065"},{"id":"A23","pred":"uberon_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A24","pred":"uberon_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A25","pred":"uberon_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"},{"id":"A26","pred":"uberon_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A27","pred":"uberon_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"id":"A28","pred":"uberon_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T47","span":{"begin":718,"end":722},"obj":"Disease"}],"attributes":[{"id":"A47","pred":"mondo_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T47","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T67","span":{"begin":16,"end":23},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T68","span":{"begin":93,"end":100},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T69","span":{"begin":192,"end":196},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T70","span":{"begin":252,"end":256},"obj":"http://purl.obolibrary.org/obo/CLO_0001001"},{"id":"T71","span":{"begin":346,"end":369},"obj":"http://purl.obolibrary.org/obo/UBERON_0001558"},{"id":"T72","span":{"begin":462,"end":485},"obj":"http://purl.obolibrary.org/obo/UBERON_0001558"},{"id":"T73","span":{"begin":535,"end":537},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T74","span":{"begin":594,"end":599},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T75","span":{"begin":642,"end":646},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T76","span":{"begin":642,"end":646},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T77","span":{"begin":848,"end":854},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T78","span":{"begin":972,"end":977},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T79","span":{"begin":1032,"end":1036},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T80","span":{"begin":1059,"end":1066},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"}],"attributes":[{"subj":"T67","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T68","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T69","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T70","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T71","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T72","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T73","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T74","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T75","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T76","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T77","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T78","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T79","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T80","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T71","span":{"begin":0,"end":23},"obj":"Sentence"},{"id":"T72","span":{"begin":24,"end":197},"obj":"Sentence"},{"id":"T73","span":{"begin":198,"end":370},"obj":"Sentence"},{"id":"T74","span":{"begin":371,"end":539},"obj":"Sentence"},{"id":"T75","span":{"begin":540,"end":728},"obj":"Sentence"},{"id":"T76","span":{"begin":729,"end":930},"obj":"Sentence"},{"id":"T77","span":{"begin":931,"end":1051},"obj":"Sentence"},{"id":"T78","span":{"begin":1052,"end":1186},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T71","pred":"source","obj":"LitCovid-sentences"},{"subj":"T72","pred":"source","obj":"LitCovid-sentences"},{"subj":"T73","pred":"source","obj":"LitCovid-sentences"},{"subj":"T74","pred":"source","obj":"LitCovid-sentences"},{"subj":"T75","pred":"source","obj":"LitCovid-sentences"},{"subj":"T76","pred":"source","obj":"LitCovid-sentences"},{"subj":"T77","pred":"source","obj":"LitCovid-sentences"},{"subj":"T78","pred":"source","obj":"LitCovid-sentences"}]},{"project":"2_test","denotations":[{"id":"32078069-24837403-22841766","span":{"begin":535,"end":537},"obj":"24837403"},{"id":"32078069-15498155-22841767","span":{"begin":724,"end":726},"obj":"15498155"}],"attributes":[{"subj":"32078069-24837403-22841766","pred":"source","obj":"2_test"},{"subj":"32078069-15498155-22841767","pred":"source","obj":"2_test"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"266","span":{"begin":172,"end":176},"obj":"Gene"},{"id":"267","span":{"begin":190,"end":191},"obj":"Gene"},{"id":"268","span":{"begin":65,"end":73},"obj":"Species"},{"id":"269","span":{"begin":131,"end":140},"obj":"Species"},{"id":"270","span":{"begin":413,"end":421},"obj":"Species"},{"id":"271","span":{"begin":427,"end":431},"obj":"Disease"},{"id":"279","span":{"begin":558,"end":567},"obj":"Species"},{"id":"280","span":{"begin":704,"end":712},"obj":"Species"},{"id":"281","span":{"begin":756,"end":765},"obj":"Species"},{"id":"282","span":{"begin":839,"end":847},"obj":"Species"},{"id":"283","span":{"begin":878,"end":887},"obj":"Species"},{"id":"284","span":{"begin":633,"end":641},"obj":"Disease"},{"id":"285","span":{"begin":718,"end":722},"obj":"Disease"}],"attributes":[{"id":"A266","pred":"tao:has_database_id","subj":"266","obj":"Gene:43740578"},{"id":"A267","pred":"tao:has_database_id","subj":"267","obj":"Gene:43740568"},{"id":"A268","pred":"tao:has_database_id","subj":"268","obj":"Tax:9606"},{"id":"A269","pred":"tao:has_database_id","subj":"269","obj":"Tax:2697049"},{"id":"A270","pred":"tao:has_database_id","subj":"270","obj":"Tax:9606"},{"id":"A271","pred":"tao:has_database_id","subj":"271","obj":"MESH:D018352"},{"id":"A279","pred":"tao:has_database_id","subj":"279","obj":"Tax:2697049"},{"id":"A280","pred":"tao:has_database_id","subj":"280","obj":"Tax:9606"},{"id":"A281","pred":"tao:has_database_id","subj":"281","obj":"Tax:2697049"},{"id":"A282","pred":"tao:has_database_id","subj":"282","obj":"Tax:9606"},{"id":"A283","pred":"tao:has_database_id","subj":"283","obj":"Tax:2697049"},{"id":"A284","pred":"tao:has_database_id","subj":"284","obj":"MESH:D007239"},{"id":"A285","pred":"tao:has_database_id","subj":"285","obj":"MESH:D045169"},{"subj":"266","pred":"source","obj":"LitCovid-PubTator"},{"subj":"267","pred":"source","obj":"LitCovid-PubTator"},{"subj":"268","pred":"source","obj":"LitCovid-PubTator"},{"subj":"269","pred":"source","obj":"LitCovid-PubTator"},{"subj":"270","pred":"source","obj":"LitCovid-PubTator"},{"subj":"271","pred":"source","obj":"LitCovid-PubTator"},{"subj":"279","pred":"source","obj":"LitCovid-PubTator"},{"subj":"280","pred":"source","obj":"LitCovid-PubTator"},{"subj":"281","pred":"source","obj":"LitCovid-PubTator"},{"subj":"282","pred":"source","obj":"LitCovid-PubTator"},{"subj":"283","pred":"source","obj":"LitCovid-PubTator"},{"subj":"284","pred":"source","obj":"LitCovid-PubTator"},{"subj":"285","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93ecdd","default":true},{"id":"LitCovid-PD-UBERON","color":"#ecc393"},{"id":"LitCovid-PD-MONDO","color":"#a993ec"},{"id":"LitCovid-PD-CLO","color":"#96ec93"},{"id":"LitCovid-sentences","color":"#ec93b1"},{"id":"2_test","color":"#93cbec"},{"id":"LitCovid-PubTator","color":"#e5ec93"}]}]}}