PMC:7033263 / 8790-9976
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T30 | 47-53 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T31 | 192-196 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T32 | 232-238 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T33 | 286-292 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
| T34 | 346-369 | Body_part | denotes | lower respiratory tract | http://purl.org/sig/ont/fma/fma45662 |
| T35 | 462-485 | Body_part | denotes | lower respiratory tract | http://purl.org/sig/ont/fma/fma45662 |
| T36 | 502-525 | Body_part | denotes | upper respiratory tract | http://purl.org/sig/ont/fma/fma45661 |
| T37 | 540-545 | Body_part | denotes | Serum | http://purl.org/sig/ont/fma/fma63083 |
| T38 | 642-646 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T39 | 798-803 | Body_part | denotes | stool | http://purl.org/sig/ont/fma/fma64183 |
| T40 | 901-906 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T41 | 972-977 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T42 | 1093-1099 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T14 | 47-53 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T15 | 232-238 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T16 | 286-292 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
| T17 | 346-369 | Body_part | denotes | lower respiratory tract | http://purl.obolibrary.org/obo/UBERON_0001558 |
| T18 | 352-369 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
| T19 | 462-485 | Body_part | denotes | lower respiratory tract | http://purl.obolibrary.org/obo/UBERON_0001558 |
| T20 | 468-485 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
| T21 | 502-525 | Body_part | denotes | upper respiratory tract | http://purl.obolibrary.org/obo/UBERON_0001557 |
| T22 | 508-525 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
| T23 | 540-545 | Body_part | denotes | Serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T24 | 642-646 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T25 | 798-803 | Body_part | denotes | stool | http://purl.obolibrary.org/obo/UBERON_0001988 |
| T26 | 901-906 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T27 | 972-977 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T28 | 1093-1099 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T47 | 718-722 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T67 | 16-23 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T68 | 93-100 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T69 | 192-196 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T70 | 252-256 | http://purl.obolibrary.org/obo/CLO_0001001 | denotes | 8–13 |
| T71 | 346-369 | http://purl.obolibrary.org/obo/UBERON_0001558 | denotes | lower respiratory tract |
| T72 | 462-485 | http://purl.obolibrary.org/obo/UBERON_0001558 | denotes | lower respiratory tract |
| T73 | 535-537 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T74 | 594-599 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T75 | 642-646 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T76 | 642-646 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T77 | 848-854 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T78 | 972-977 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T79 | 1032-1036 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T80 | 1059-1066 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T71 | 0-23 | Sentence | denotes | Microbiological testing |
| T72 | 24-197 | Sentence | denotes | Nasopharyngeal swab or sputum samples of patients were available for testing by specific RT-PCR assays for 2019-nCoV to detect the highly conserved RdRp and variable S gene. |
| T73 | 198-370 | Sentence | denotes | The cycle threshold values of the sputum samples were 8–13 cycles earlier than those of throat swabs, indicating higher viral loads detected in the lower respiratory tract. |
| T74 | 371-539 | Sentence | denotes | It is consistent with the observations in patients with MERS who had higher viral loads in lower respiratory tract samples than in upper respiratory tract samples [22]. |
| T75 | 540-728 | Sentence | denotes | Serum samples for 2019-nCoV which might indicate some virus spillover from the more severely infected lung into the systemic circulation, as previously reported in patients with SARS [23]. |
| T76 | 729-930 | Sentence | denotes | However, the first case of 2019-nCoV in the United States report the stool and respiratory specimens from the patients tested positive by RT-PCR for 2019-nCoV, whereas the serum remained negative [24]. |
| T77 | 931-1051 | Sentence | denotes | Importantly, the ground glass changes on chest CT scan appeared earlier than the positive for RT-PCR test in some cases. |
| T78 | 1052-1186 | Sentence | denotes | Repeat testing of nasopharyngeal swab or sputum samples are recommended in clinical suspected cases with an initially negative result. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32078069-24837403-22841766 | 535-537 | 24837403 | denotes | 22 |
| 32078069-15498155-22841767 | 724-726 | 15498155 | denotes | 23 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 266 | 172-176 | Gene | denotes | RdRp | Gene:43740578 |
| 267 | 190-191 | Gene | denotes | S | Gene:43740568 |
| 268 | 65-73 | Species | denotes | patients | Tax:9606 |
| 269 | 131-140 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 270 | 413-421 | Species | denotes | patients | Tax:9606 |
| 271 | 427-431 | Disease | denotes | MERS | MESH:D018352 |
| 279 | 558-567 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 280 | 704-712 | Species | denotes | patients | Tax:9606 |
| 281 | 756-765 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 282 | 839-847 | Species | denotes | patients | Tax:9606 |
| 283 | 878-887 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 284 | 633-641 | Disease | denotes | infected | MESH:D007239 |
| 285 | 718-722 | Disease | denotes | SARS | MESH:D045169 |