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PMC:7033263 / 2808-4539 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 80-83 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T4 737-744 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T5 990-996 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T6 1342-1347 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T7 1439-1455 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T8 1450-1455 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T9 1473-1479 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T10 1488-1493 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T11 1699-1722 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1473-1479 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T2 1699-1722 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T3 1705-1722 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T9 208-227 Disease denotes neurologic diseases http://purl.obolibrary.org/obo/MONDO_0005071
T10 385-405 Disease denotes respiratory diseases http://purl.obolibrary.org/obo/MONDO_0005087
T11 485-518 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T12 532-540 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T13 886-896 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T14 1257-1265 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 1360-1368 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 1502-1510 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 1631-1639 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 1699-1730 Disease denotes lower respiratory tract disease http://purl.obolibrary.org/obo/MONDO_0000270

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T9 84-91 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T10 127-133 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T11 276-281 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T12 296-303 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T13 761-766 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T14 771-777 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T15 778-788 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T16 847-853 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T17 997-1000 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T18 1091-1095 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T19 1342-1347 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T20 1426-1431 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T21 1432-1438 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T22 1439-1449 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T23 1450-1455 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T24 1480-1493 http://purl.obolibrary.org/obo/CL_0000010 denotes culture cells
T25 1589-1594 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T26 1641-1643 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T27 1699-1722 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1060-1064 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T2 1595-1606 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T21 0-18 Sentence denotes 2019-nCoV features
T22 19-232 Sentence denotes Coronaviruses are enveloped, positive-sense, single stranded RNA viruses that are distributed broadly among humans, other mammals, and birds, which cause respiratory, enteric, hepatic, and neurologic diseases [5].
T23 233-290 Sentence denotes Six coronavirus species are known to cause human disease.
T24 291-410 Sentence denotes Four viruses including hCoV-229E, OC43, NL63, and HKU1 are prevalent and typically cause mild respiratory diseases [6].
T25 411-618 Sentence denotes The two novel fatal coronaviruses emerge periodically in different areas, severe acute respiratory syndrome coronavirus (SARS-CoV) in 2002 and Middle East respiratory syndrome coronavirus (MERS-CoV) in 2012.
T26 619-936 Sentence denotes Given the high prevalence and wide distribution of coronaviruses, the genetic diversity and frequent recombination of genomes, and increasing human and animal activities, novel coronaviruses are likely to emerge periodically in humans owing to frequent cross-species infections and occasional spillover events [7, 8].
T27 937-1308 Sentence denotes As Zhu et al. reported that the identified 2019-nCoV genome has been sequenced are phylogenetically the closest to certain beta-coronaviruses detected in bats, belonging to the sarbecovirus subgenus of coronaviridae family [1], and these results in conjunction with other reports show that it is 75–80% identical to the SARS-CoV [9, 10] and 40% identical to the MERS-CoV.
T28 1309-1382 Sentence denotes It can be propagated in the same cells for growing SARS-CoV and MERS-CoV.
T29 1383-1523 Sentence denotes Notably, 2019-nCoV grows better in primary human airway epithelial cells than in standard tissue-culture cells, unlike SARS-CoV or MERS-CoV.
T30 1524-1731 Sentence denotes It appears that 2019-nCoV uses the same cellular receptor hACE2 (human angiotensin-converting enzyme 2) as SARS-CoV [11], it seems the transmission may develop after signs of lower respiratory tract disease.

2_test

Id Subject Object Predicate Lexical cue
32078069-27012512-22841761 407-408 27012512 denotes 6
32078069-30531947-22841762 930-931 30531947 denotes 7
32078069-26468744-22841763 933-934 26468744 denotes 8

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
113 1373-1381 Species denotes MERS-CoV Tax:1335626
49 0-9 Species denotes 2019-nCoV Tax:2697049
69 19-32 Species denotes Coronaviruses Tax:11118
70 127-133 Species denotes humans Tax:9606
71 237-248 Species denotes coronavirus Tax:11118
72 276-281 Species denotes human Tax:9606
73 314-323 Species denotes hCoV-229E Tax:11137
74 431-444 Species denotes coronaviruses Tax:11118
75 485-530 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
76 532-540 Species denotes SARS-CoV Tax:694009
77 554-609 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
78 670-683 Species denotes coronaviruses Tax:11118
79 761-766 Species denotes human Tax:9606
80 790-809 Species denotes novel coronaviruses Tax:2697049
81 847-853 Species denotes humans Tax:9606
82 325-329 Species denotes OC43 Tax:31631
83 331-335 Species denotes NL63 Tax:277944
84 341-345 Species denotes HKU1 Tax:290028
85 208-227 Disease denotes neurologic diseases MESH:D020271
86 385-405 Disease denotes respiratory diseases MESH:D012140
87 872-896 Disease denotes cross-species infections MESH:D003428
105 1582-1587 Gene denotes hACE2 Gene:59272
106 1595-1626 Gene denotes angiotensin-converting enzyme 2 Gene:59272
107 980-989 Species denotes 2019-nCoV Tax:2697049
108 1060-1078 Species denotes beta-coronaviruses Tax:694002
109 1139-1152 Species denotes coronaviridae Tax:11118
110 1257-1265 Species denotes SARS-CoV Tax:694009
111 1299-1307 Species denotes MERS-CoV Tax:1335626
112 1360-1368 Species denotes SARS-CoV Tax:694009
114 1392-1401 Species denotes 2019-nCoV Tax:2697049
115 1426-1431 Species denotes human Tax:9606
116 1502-1510 Species denotes SARS-CoV Tax:694009
117 1514-1522 Species denotes MERS-CoV Tax:1335626
118 1540-1549 Species denotes 2019-nCoV Tax:2697049
119 1589-1594 Species denotes human Tax:9606
120 1631-1639 Species denotes SARS-CoV Tax:694009
121 1705-1730 Disease denotes respiratory tract disease MESH:D012140