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PMC:7029452 / 1304-3229 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
37 13-30 Species denotes novel coronavirus Tax:2697049
38 32-79 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
39 81-91 Species denotes SARS-CoV-2 Tax:2697049
40 242-250 Species denotes patients Tax:9606
41 515-525 Species denotes SARS-CoV-2 Tax:2697049
42 852-857 Species denotes Human Tax:9606
43 861-866 Species denotes human Tax:9606
44 1067-1072 Species denotes human Tax:9606
45 1076-1081 Species denotes human Tax:9606
46 114-136 Disease denotes respiratory infections MESH:D012141
47 138-162 Disease denotes coronavirus disease 2019 MESH:C000657245
48 164-172 Disease denotes COVID-19 MESH:C000657245
49 256-265 Disease denotes pneumonia MESH:D011014
50 563-569 Disease denotes deaths MESH:D003643
51 799-808 Disease denotes infection MESH:D007239
54 1125-1133 Disease denotes COVID-19 MESH:C000657245
55 1506-1515 Disease denotes infection MESH:D007239
59 1706-1713 Species denotes persons Tax:9606
60 1634-1642 Disease denotes COVID-19 MESH:C000657245
61 1915-1924 Disease denotes infection MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T11 32-79 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T12 32-65 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T13 81-89 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 81-85 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 114-136 Disease denotes respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T16 138-162 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T17 164-172 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 256-265 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T19 515-523 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 515-519 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T21 799-808 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 1125-1133 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 1506-1515 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T24 1634-1642 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 1915-1924 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T6 11-12 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T7 101-102 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 327-328 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 334-340 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T10 672-675 http://purl.obolibrary.org/obo/CLO_0001406 denotes 514
T11 844-850 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T12 852-857 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T13 861-866 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T14 931-936 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T15 1067-1072 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T16 1076-1081 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T17 1190-1199 http://purl.obolibrary.org/obo/BFO_0000030 denotes objective
T18 1435-1436 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 1719-1720 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 114-136 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947
T4 256-265 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T12 0-10 Sentence denotes Background
T13 11-228 Sentence denotes A novel coronavirus (severe acute respiratory syndrome coronavirus 2, SARS-CoV-2) causing a cluster of respiratory infections (coronavirus disease 2019, COVID-19) in Wuhan, China, was identified on 7 January 2020 [1].
T14 229-397 Sentence denotes Twenty-seven patients with pneumonia had initially been reported, with an epidemiological link to a live animal market that was closed and disinfected on 1 January [1].
T15 398-574 Sentence denotes From 20 January, the number of notifications of cases rose dramatically, and as at 12 February 2020, 45,179 cases of SARS-CoV-2 have been confirmed, including 1,116 deaths [2].
T16 575-767 Sentence denotes Most of the cases (n = 44,665) were reported in 31 provinces and autonomous regions of China and 514 cases were reported in 25 other countries in Asia, Australia, Europe and North America [2].
T17 768-851 Sentence denotes To date, the primary source of infection remains unknown and could still be active.
T18 852-1008 Sentence denotes Human-to-human transmission was observed early after the emergence of this new virus in China and abroad, including family clusters and healthcare settings.
T19 1009-1095 Sentence denotes The current outbreak dynamics strongly indicate sustained human-to-human transmission.
T20 1096-1185 Sentence denotes Strengthened surveillance of COVID-19 cases was implemented in France on 10 January 2020.
T21 1186-1353 Sentence denotes The objective of the surveillance is to identify imported cases early and to prevent secondary transmission whether in the community or among healthcare workers (HCW).
T22 1354-1521 Sentence denotes Investigations are carried out among contacts immediately upon illness onset and a follow-up procedure is initiated according to the evaluated level of infection risk.
T23 1522-1742 Sentence denotes Here we describe the real-time implementation of this surveillance scheme for the first three imported cases of COVID-19 identified in France, who were confirmed on 24 January 2020 in persons with a recent stay in Wuhan.
T24 1743-1797 Sentence denotes Two cases were diagnosed in Paris and one in Bordeaux.
T25 1798-1925 Sentence denotes We present data until 12 February on the follow-up of the cases’ contacts initiated immediately upon confirmation of infection.