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PMC:7029452 / 11955-12891 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
194 779-783 Gene denotes RdRp Gene:43740578
195 695-708 Gene denotes Cases 2 and 3
196 845-849 Gene denotes RdRp Gene:43740578
197 596-606 Species denotes SARS-CoV-2 Tax:2697049
198 800-809 Species denotes 2019-nCov Tax:2697049
199 128-133 Disease denotes fever MESH:D005334
200 143-150 Disease denotes fatigue MESH:D005221
201 152-166 Disease denotes conjunctivitis MESH:D003231
202 171-176 Disease denotes cough MESH:D003371
203 281-286 Disease denotes fever MESH:D005334
204 296-303 Disease denotes fatigue MESH:D005221
205 308-313 Disease denotes cough MESH:D003371
206 571-579 Disease denotes COVID-19 MESH:C000657245
207 581-590 Disease denotes Infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T11 924-928 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T67 152-166 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T68 571-579 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T69 581-590 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T70 596-604 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T71 596-600 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T86 11-12 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 33-37 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T88 33-37 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T89 68-70 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T90 203-204 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 225-231 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T92 488-489 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 784-787 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes Pan
T94 818-822 http://purl.obolibrary.org/obo/CLO_0037161 denotes E; N
T95 924-928 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 33-37 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T11 850-852 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T13 128-133 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T14 135-141 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T15 143-150 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T16 152-166 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T17 171-176 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T18 281-286 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T19 288-294 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T20 296-303 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T21 308-313 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T83 0-114 Sentence denotes Case 2 was a 31-year-old Chinese male tourist who had left Wuhan on 18 January and arrived in Paris on 19 January.
T84 115-191 Sentence denotes He developed fever, chills, fatigue, conjunctivitis and cough on 19 January.
T85 192-266 Sentence denotes Case 3 was a 30-year-old Chinese female tourist who travelled with Case 2.
T86 267-328 Sentence denotes She developed fever, chills, fatigue and cough on 23 January.
T87 329-580 Sentence denotes On 24 January, they were advised by the Chinese embassy to seek medical attention at the national hotline (SAMU-centre 15) and were immediately transferred to a regional referring hospital, isolated and sampled for laboratory confirmation of COVID-19.
T88 581-694 Sentence denotes Infection with SARS-CoV-2 was confirmed on 24 January for both of them by the National Reference Centre (Figure).
T89 695-936 Sentence denotes Cases 2 and 3 were positive by RT-PCR for all targets of the Charité procedure [4] (RdRp Pan Sarbeco and 2019-nCov probes; E; N) as well for the four RdRp-IP targets with Ct values in good agreement with those obtained for the E gene target.