PMC:7017962 / 2132-3456
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 67 | 136-145 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 68 | 203-212 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 69 | 851-858 | Species | denotes | patient | Tax:9606 |
| 70 | 976-985 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 71 | 1033-1040 | Species | denotes | persons | Tax:9606 |
| 72 | 1157-1166 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 73 | 1310-1319 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 74 | 632-637 | Disease | denotes | fever | MESH:D005334 |
| 75 | 660-685 | Disease | denotes | respiratory tract illness | MESH:D012140 |
| 76 | 693-698 | Disease | denotes | cough | MESH:D003371 |
| 77 | 885-904 | Disease | denotes | 2019-nCoV infection | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 654-677 | Body_part | denotes | lower respiratory tract | http://purl.org/sig/ont/fma/fma45662 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 654-677 | Body_part | denotes | lower respiratory tract | http://purl.obolibrary.org/obo/UBERON_0001558 |
| T2 | 660-677 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T14 | 885-904 | Disease | denotes | 2019-nCoV infection | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T15 | 895-904 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T13 | 45-55 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T14 | 57-60 | http://purl.obolibrary.org/obo/CL_0000990 | denotes | CDC |
| T15 | 213-220 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T16 | 343-347 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T17 | 409-420 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing was |
| T18 | 434-437 | http://purl.obolibrary.org/obo/CL_0000990 | denotes | CDC |
| T19 | 439-440 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T20 | 468-469 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T21 | 575-576 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T22 | 605-606 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T23 | 654-677 | http://purl.obolibrary.org/obo/UBERON_0001558 | denotes | lower respiratory tract |
| T24 | 849-850 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T25 | 1000-1011 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing was |
| T26 | 1167-1174 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T27 | 1234-1245 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing was |
| T28 | 1259-1262 | http://purl.obolibrary.org/obo/CL_0000990 | denotes | CDC |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 713-722 | http://purl.obolibrary.org/obo/GO_0007585 | denotes | breathing |
| T2 | 1186-1207 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | reverse transcription |
| T3 | 1194-1207 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15 | 0-151 | Sentence | denotes | As part of CDC’s Emergency Operations Center activation, CDC personnel assist state and local health departments with the evaluation of 2019-nCoV PUIs. |
| T16 | 152-393 | Sentence | denotes | Public health laboratories were not yet conducting 2019-nCoV testing during the period covered by this report, while awaiting Food and Drug Administration emergency use authorization for the test. (The authorization occurred on February 4*). |
| T17 | 394-438 | Sentence | denotes | Therefore, all testing was conducted at CDC. |
| T18 | 439-517 | Sentence | denotes | A call center was staffed by a team of physicians and nurses 24 hours per day. |
| T19 | 518-758 | Sentence | denotes | During January 17–31, criteria used to determine whether a person was considered to be a PUI included presence of fever and symptoms of lower respiratory tract illness (e.g., cough or difficulty breathing) in addition to epidemiologic risk. |
| T20 | 759-939 | Sentence | denotes | Epidemiologic risk factors included history of travel from Wuhan City, close contact with a patient with laboratory-confirmed 2019-nCoV infection, or close contact with an ill PUI. |
| T21 | 940-1116 | Sentence | denotes | Given the evolving understanding of 2019-nCoV epidemiology, testing was recommended for some persons who did not strictly meet the PUI definition, based on clinical discretion. |
| T22 | 1117-1324 | Sentence | denotes | For clinical inquiries that resulted in 2019-nCoV testing, real-time reverse transcription polymerase chain reaction testing was conducted at CDC using methods developed specifically to detect 2019-nCoV (7). |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T3 | 632-637 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T4 | 693-698 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T5 | 702-722 | Phenotype | denotes | difficulty breathing | http://purl.obolibrary.org/obo/HP_0002098 |