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PMC:7014672 / 3332-4330 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
43 814-823 Disease denotes infection MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T16 814-823 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T12 76-77 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 321-322 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 563-565 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T15 563-565 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T16 728-729 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 859-868 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 262-267 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T3 563-565 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T4 994-996 Chemical denotes S3 http://purl.obolibrary.org/obo/CHEBI_29388

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T27 0-142 Sentence denotes Using the duration of stay in Wuhan and the symptom onset date, we obtained a range of possible values for the incubation period of each case.
T28 143-312 Sentence denotes We fitted three parametric forms for the incubation period distribution to these ranges: the Weibull distribution, the gamma distribution and the lognormal distribution.
T29 313-418 Sentence denotes We used a Bayesian approach to fitting that allows for the use of prior knowledge to inform the analysis.
T30 419-613 Sentence denotes We specified strictly positive flat prior probability distributions for the parameter values of the three distributions (Supplementary Material S2), which ensured our estimates are conservative.
T31 614-719 Sentence denotes Because of the sufficient number of observations, the impact of the priors on the outcome was negligible.
T32 720-838 Sentence denotes We used a uniform prior probability distribution over the exposure interval for the moment of infection for each case.
T33 839-998 Sentence denotes We sampled from the posterior distribution using the rstan package [9] in R software version 3.6.0 (R Foundation, Vienna, Austria) (Supplementary Material S3).