> top > docs > PMC:7014669 > spans > 144-5393 > annotations

PMC:7014669 / 144-5393 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
6 97-114 Species denotes novel coronavirus Tax:2697049
7 116-125 Species denotes 2019-nCoV Tax:2697049
13 788-792 Species denotes H1N1 Tax:114727
14 853-863 Species denotes poliovirus Tax:138950
15 872-877 Species denotes Ebola Tax:1570291
16 927-937 Species denotes Zika virus Tax:64320
17 977-982 Species denotes Ebola Tax:1570291
21 1110-1132 Species denotes 2019 novel coronavirus Tax:2697049
22 1471-1476 Species denotes human Tax:9606
23 1480-1485 Species denotes human Tax:9606
30 1850-1859 Species denotes 2019-nCoV Tax:2697049
31 1911-1919 Species denotes patients Tax:9606
32 1977-1984 Species denotes persons Tax:9606
33 2009-2026 Species denotes novel coronavirus Tax:2697049
34 1690-1691 Chemical denotes Q MESH:D005973
35 1925-1944 Disease denotes 2019-nCoV infection MESH:C000657245
40 2391-2408 Species denotes novel coronavirus Tax:2697049
41 2410-2419 Species denotes 2019-nCoV Tax:2697049
42 2495-2503 Species denotes SARS-CoV Tax:694009
43 2268-2277 Disease denotes pneumonia MESH:D011014
46 2577-2586 Species denotes 2019-nCoV Tax:2697049
47 2763-2772 Species denotes 2019-nCoV Tax:2697049
52 2943-2948 Species denotes human Tax:9606
53 2952-2957 Species denotes human Tax:9606
54 2837-2843 Disease denotes deaths MESH:D003643
55 3051-3059 Disease denotes infected MESH:D007239
57 3106-3115 Species denotes 2019-nCoV Tax:2697049
59 3565-3571 Disease denotes deaths MESH:D003643
61 4082-4091 Species denotes 2019-nCoV Tax:2697049
63 4129-4138 Disease denotes infection MESH:D007239
65 4241-4250 Disease denotes infection MESH:D007239
67 4407-4410 Chemical denotes EEA
71 4456-4461 Species denotes human Tax:9606
72 4465-4470 Species denotes human Tax:9606
73 4578-4587 Disease denotes infection MESH:D007239
78 4839-4844 Species denotes human Tax:9606
79 4848-4853 Species denotes human Tax:9606
80 4731-4734 Chemical denotes EEA
81 4881-4884 Chemical denotes EEA
85 5095-5100 Species denotes human Tax:9606
86 5104-5109 Species denotes human Tax:9606
87 5014-5023 Disease denotes infection MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 788-802 Disease denotes H1N1 influenza http://purl.obolibrary.org/obo/MONDO_0005460
T2 793-802 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T3 872-877 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T4 927-931 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T5 977-982 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T6 1925-1944 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T7 1935-1944 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 2268-2277 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T9 2495-2503 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 4129-4138 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 4241-4250 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 4578-4587 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 5014-5023 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 48-60 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T3 127-128 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 480-485 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T5 654-659 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 673-674 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 932-937 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T8 1265-1266 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1327-1332 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T10 1471-1476 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T11 1480-1485 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T12 1631-1632 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 2255-2256 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 2376-2379 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T15 2389-2390 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 2865-2870 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T17 2943-2948 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T18 2952-2957 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T19 3239-3240 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 3405-3408 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T21 3447-3452 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T22 4338-4339 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 4456-4461 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T24 4465-4470 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T25 4612-4615 http://purl.obolibrary.org/obo/CL_0000784 denotes IPC
T26 4751-4752 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 4785-4788 http://purl.obolibrary.org/obo/CL_0000784 denotes IPC
T28 4839-4844 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T29 4848-4853 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T30 5095-5100 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T31 5104-5109 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T32 5142-5143 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 226-228 Chemical denotes DG http://purl.obolibrary.org/obo/CHEBI_73450
T2 445-447 Chemical denotes DG http://purl.obolibrary.org/obo/CHEBI_73450
T3 4612-4615 Chemical denotes IPC http://purl.obolibrary.org/obo/CHEBI_53004
T4 4785-4788 Chemical denotes IPC http://purl.obolibrary.org/obo/CHEBI_53004
T5 4987-4998 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 390-401 http://purl.obolibrary.org/obo/GO_0065007 denotes Regulations

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-186 Sentence denotes Yesterday, on 30 January 2020, the World Health Organization (WHO) declared the emergence of the novel coronavirus (2019-nCoV) a public health emergency of international concern (PHEIC).
T4 187-419 Sentence denotes This decision by WHO Director-General (DG) Tedros Adhanom Ghebreyesus, was made following the recommendations of the Emergency Committee in its second meeting [1] convened under the International Health Regulations (IHR) (2005) [2].
T5 420-717 Sentence denotes In his decision, the WHO DG stressed ‘the potential for the virus to spread to countries with weaker health systems, and which are ill-prepared to deal with it’ as one major concern and the importance of ‘preventing the spread of the virus and ensuring a measured and evidence-based response’ [3].
T6 718-992 Sentence denotes This sixth PHEIC under the IHR follows those declared in 2009 for the H1N1 influenza pandemic, in 2014 for the international spread of poliovirus and the Ebola outbreak in West Africa, in 2016 for the 2015/16 Zika virus epidemic and in July 2019 for the Kivu Ebola epidemic.
T7 993-1188 Sentence denotes Following the declaration of the PHEIC, we would like to remind the readers of Eurosurveillance about our dedicated ‘2019 novel coronavirus collection’ that we update regularly with new articles.
T8 1189-1499 Sentence denotes It already contains several articles about, for example, the development of a diagnostic methodology based on RT-PCR without the need for virus material, the severity among hospitalised cases, early-stage estimates of the importation risk to Europe, and estimated patterns of early human-to-human transmission.
T9 1500-1651 Sentence denotes The European Centre for Disease Prevention and Control (ECDC) provides regularly updated information relevant to Europe through on a dedicated webpage.
T10 1652-1787 Sentence denotes Besides general information including Q&As, daily case counts, and maps with disease distribution, examples of latest updates comprise:
T11 1788-2055 Sentence denotes Algorithm for management of contacts of probable or confirmed 2019-nCoV cases, Advice to healthcare workers: management of patients with 2019-nCoV infection and Public health management of persons having had contact with novel coronavirus cases in the European Union.
T12 2056-2164 Sentence denotes The ECDC also publishes regular risk assessments, the Box contains the summary from the one published today.
T13 2165-2169 Sentence denotes Box.
T14 2171-2233 Sentence denotes Summary of the ECDC rapid risk assessment from 31 January 2020
T15 2234-2350 Sentence denotes On 31 December 2019, a cluster of pneumonia cases of unknown aetiology was reported in Wuhan, Hubei Province, China.
T16 2351-2510 Sentence denotes On 9 January 2020, China CDC reported a novel coronavirus (2019-nCoV) as the causative agent of this outbreak, which is phylogenetically in the SARS-CoV clade.
T17 2511-2720 Sentence denotes As of 30 January 2020 09:00, more than 7 000 laboratory-confirmed 2019-nCoV cases have been reported worldwide, mainly in China, but also with more than 70 imported cases from other countries around the world.
T18 2721-2804 Sentence denotes Details on the epidemiological update for 2019-nCoV can be found on ECDC’s website.
T19 2805-2890 Sentence denotes So far, one hundred and seventy deaths associated with this virus have been reported.
T20 2891-2997 Sentence denotes On 20 January, Chinese health authorities confirmed human-to-human transmission outside of Hubei province.
T21 2998-3060 Sentence denotes Sixteen healthcare workers are reported to have been infected.
T22 3061-3223 Sentence denotes On 24 January 2020, the first three cases of 2019-nCoV imported into the EU/EEA were identified in France and one additional case was reported on 29 January 2020.
T23 3224-3337 Sentence denotes On 28 January, a cluster of four locally-acquired cases, with indirect links to Wuhan, was reported from Germany.
T24 3338-3398 Sentence denotes On 29 January, Finland reported an imported case from Wuhan.
T25 3399-3546 Sentence denotes China CDC assesses the transmissibility of this virus to be sufficient for sustained community transmission without unprecedented control measures.
T26 3547-3623 Sentence denotes Further cases and deaths in China are expected in the coming days and weeks.
T27 3624-3719 Sentence denotes Further cases or clusters are also expected among travellers from China, mainly Hubei province.
T28 3720-3859 Sentence denotes Therefore, health authorities in the EU/EEA Member States should remain vigilant and strengthen their capacity to respond to such an event.
T29 3860-3983 Sentence denotes There are considerable uncertainties in assessing the risk of this event, due to lack of detailed epidemiological analyses.
T30 3984-4057 Sentence denotes On the basis of the information currently available, ECDC considers that:
T31 4058-4110 Sentence denotes the potential impact of 2019-nCoV outbreaks is high;
T32 4111-4222 Sentence denotes the likelihood of infection for EU/EEA citizens residing in or visiting Hubei province is estimated to be high;
T33 4223-4328 Sentence denotes the likelihood of infection for EU/EEA citizens in other Chinese provinces is moderate and will increase;
T34 4329-4411 Sentence denotes there is a moderate-to-high likelihood of additional imported cases in the EU/EEA;
T35 4412-4700 Sentence denotes the likelihood of observing further limited human-to-human transmission within the EU/EEA is estimated as very low to low if cases are detected early and appropriate infection prevention and control (IPC) practices are implemented, particularly in healthcare settings in EU/EEA countries;
T36 4701-4914 Sentence denotes assuming that cases in the EU/EEA are detected in a timely manner and that rigorous IPC measures are applied, the likelihood of sustained human-to-human transmission within the EU/EEA is currently very low to low;
T37 4915-5237 Sentence denotes the late detection of an imported case in an EU/EEA country without the application of appropriate infection prevention and control measures would result in the high likelihood of human-to-human transmission, therefore in such a scenario the risk of secondary transmission in the community setting is estimated to be high.
T38 5238-5249 Sentence denotes Source: [4]

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 2268-2277 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090