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PMC:7003341 / 12251-16988 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 2504-2527 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T6 3030-3046 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T7 3041-3046 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T8 3137-3141 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 2504-2527 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T5 2510-2527 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 52-71 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T38 62-71 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T39 141-150 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T40 346-367 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T41 358-367 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T42 867-876 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T43 882-901 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T44 892-901 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T45 1777-1786 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T46 2043-2052 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T47 2086-2095 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T48 2559-2568 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T49 2828-2832 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T50 3988-3997 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T51 4531-4539 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T52 4541-4582 Disease denotes hypertension, and cardiovascular diseases http://purl.obolibrary.org/obo/MONDO_0001302
T53 4541-4553 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T54 4559-4582 Disease denotes cardiovascular diseases http://purl.obolibrary.org/obo/MONDO_0004995
T55 4614-4649 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T56 4620-4649 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T57 4651-4655 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T24 215-216 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 240-241 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 312-315 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T27 378-379 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 435-436 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 556-557 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 819-822 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T31 832-833 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 986-987 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T33 1279-1280 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T34 1674-1680 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T35 1682-1686 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T36 1842-1846 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T37 1929-1934 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T38 1987-1989 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T39 2293-2298 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T40 2404-2409 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T41 2413-2418 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T42 2433-2438 http://purl.obolibrary.org/obo/CLO_0001001 denotes 8, 13
T43 2504-2527 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T44 2589-2590 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 2649-2652 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T46 2723-2724 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 2926-2929 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T48 2969-2972 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T49 3012-3017 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T50 3030-3040 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T51 3041-3046 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T52 3131-3141 http://purl.obolibrary.org/obo/CLO_0009989 denotes Huh-7 cell
T53 3172-3177 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T54 3231-3236 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T55 3343-3346 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T56 3427-3434 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T57 3498-3503 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T58 3573-3578 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T59 3586-3588 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T60 3727-3728 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 3899-3904 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T62 4116-4117 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 4184-4185 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 4364-4366 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T6 2973-2975 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 141-150 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 346-367 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T9 867-876 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 1777-1786 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 2086-2095 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T12 2559-2568 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T13 4541-4553 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T14 4559-4582 Phenotype denotes cardiovascular diseases http://purl.obolibrary.org/obo/HP_0001626
T15 4620-4640 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2459-2471 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T2 3246-3258 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T86 0-33 Sentence denotes 3 Epidemiological characteristics
T87 35-80 Sentence denotes 3.1 Scope of the 2019-nCoV infection outbreak
T88 81-308 Sentence denotes Since December 2019, multiple cases occurring unexplainable pneumonia were successively reported in some hospitals in Wuhan city with a history of exposure to a large Hua’nan seafood market in Wuhan city, Hubei province, China.
T89 309-398 Sentence denotes It has been confirmed to be an acute respiratory infection caused by a novel coronavirus.
T90 399-498 Sentence denotes So far, the number of cases without a history of the Hua’nan seafood market exposure is increasing.
T91 499-593 Sentence denotes In addition, clustered cases and confirmed cases without a history of travel to Wuhan emerged.
T92 594-724 Sentence denotes Also, confirmed cases without clear exposure to the Wuhan seafood market have been found in many foreign countries or regions [8].
T93 725-985 Sentence denotes At 24:00 on 26 January 2020, the National Health Commission of the People’s Republic of China has recorded a total of 2744 confirmed cases of pneumonia with 2019-nCoV infection from 30 provinces (districts and cities), including 461 severe cases and 80 deaths.
T94 986-1037 Sentence denotes A total of 51 cases have been cured and discharged.
T95 1038-1278 Sentence denotes At present, 5794 suspected cases were recorded, 32,799 with close contacts to the confirmed patients have been tracked, 583 people were released from medical observation that day, and 30,453 people were still undergoing medical observation.
T96 1279-1362 Sentence denotes A total of confirmed cases were reported from Hong Kong, Macao and Taiwan of China:
T97 1363-1425 Sentence denotes 8 cases in Hong Kong, 5 cases in Macao, and 4 cases in Taiwan.
T98 1426-1485 Sentence denotes In addition, confirmed cases had been reported from abroad:
T99 1486-1644 Sentence denotes 7 in Thailand, 4 in Australia, 4 in Singapore, 3 in France, 3 in Japan, 3 in Korea, 3 in Malaysia, 3 in the United States, 2 in Vietnam, and one in Nepal [9].
T100 1646-1668 Sentence denotes 3.2 Host and reservoir
T101 1669-1735 Sentence denotes Wild animal, bats [10] is the most possible host of the 2019-nCoV.
T102 1736-1879 Sentence denotes It requires further confirmation whether pneumonia infected by the 2019-nCoV is transmitted directly from bats or through an intermediate host.
T103 1880-1991 Sentence denotes It is believed that clarifying the source of the virus will help determine zoonotic transmission patterns [11].
T104 1993-2018 Sentence denotes 3.3 Route of transmission
T105 2019-2122 Sentence denotes Up to present, the main infection source was the patients who with pneumonia infected by the 2019-nCoV.
T106 2123-2243 Sentence denotes Respiratory droplet transmission is the main route of transmission, and it can also be transmitted through contact [12].
T107 2244-2440 Sentence denotes Although many details, such as the source of the virus and its ability to spread between people remain unknown, an increasing number of cases show the signs of human-to-human transmission [8, 13].
T108 2442-2471 Sentence denotes 3.4 Etiology and pathogenesis
T109 2472-2634 Sentence denotes The 2019-nCoV isolated from the lower respiratory tract of patients with unexplainable pneumonia in Wuhan, and it is a novel coronavirus belonging to the β genus.
T110 2635-2755 Sentence denotes The 2019-nCoV has an envelope; its particles are round or oval, often polymorphic, with a diameter from 60 nm to 140 nm.
T111 2756-2899 Sentence denotes Its genetic characteristics are significantly different from SARSr-CoV (SARS related coronaviruses) and MERSr-CoV (MERS related coronaviruses).
T112 2900-2985 Sentence denotes Current research shows it has more than 85% homology with SARSr-CoV (bat-SL-CoVZC45).
T113 2986-3153 Sentence denotes 2019-nCoV can be found in human respiratory epithelial cells 96 h after in vitro isolation and culture, while it takes about 6 days in VeroE6 or Huh-7 cell lines [12].
T114 3154-3284 Sentence denotes The source of the virus, the time span of the patients discharging infective virus, and the pathogenesis are still not clear [14].
T115 3286-3312 Sentence denotes 3.5 Molecular epidemiology
T116 3313-3370 Sentence denotes No evidence of viral mutation has been found so far [14].
T117 3371-3590 Sentence denotes It is necessary to obtain much more clinically isolated viruses with time and geographical variety to assess the extent of the virus mutations, and also whether these mutations indicate adaptability to human hosts [11].
T118 3592-3628 Sentence denotes 3.6 Incubation and contagious period
T119 3629-3753 Sentence denotes Based on currently epidemiological survey, the latency period is generally from 3 to 7 days, with a maximum of 14 days [10].
T120 3754-3827 Sentence denotes Unlike SARSr-CoV, 2019-nCoV is contagious during the latency period [15].
T121 3829-3851 Sentence denotes 3.7 Prognostic factors
T122 3852-3905 Sentence denotes The population is generally susceptible to the virus.
T123 3906-4059 Sentence denotes The elderly and those with underlying diseases show more serious conditions after infection, and children and infants also get infected by the 2019-nCoV.
T124 4060-4225 Sentence denotes From current knowledge of the cases, most patients have a good prognosis, the symptoms of children are relatively mild, and a few patients are in critical condition.
T125 4226-4326 Sentence denotes Death cases are more frequently seen in the elderly and those with chronic underlying diseases [12].
T126 4327-4583 Sentence denotes The newest study including the first 41 confirmed cases admitted to Wuhan between 16 December 2019 and 2 January 2020 showed the median age of patients was 49 years; and the main underlying diseases were diabetes, hypertension, and cardiovascular diseases.
T127 4584-4737 Sentence denotes Of them, 12 cases experienced acute respiratory distress syndrome (ARDS), 13 cases were admitted to the intensive care unit (ICU), and 6 cases died [16].

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
218 4190-4198 Species denotes patients Tax:9606
115 52-71 Disease denotes 2019-nCoV infection MESH:C000657245
119 380-397 Species denotes novel coronavirus Tax:2697049
120 141-150 Disease denotes pneumonia MESH:D011014
121 346-367 Disease denotes respiratory infection MESH:D012141
129 792-798 Species denotes People Tax:9606
130 1130-1138 Species denotes patients Tax:9606
131 1162-1168 Species denotes people Tax:9606
132 1229-1235 Species denotes people Tax:9606
133 867-876 Disease denotes pneumonia MESH:D011014
134 882-901 Disease denotes 2019-nCoV infection MESH:C000657245
135 978-984 Disease denotes deaths MESH:D003643
141 1725-1734 Species denotes 2019-nCoV Tax:2697049
142 1803-1812 Species denotes 2019-nCoV Tax:2697049
143 1777-1786 Disease denotes pneumonia MESH:D011014
144 1787-1795 Disease denotes infected MESH:D007239
145 1955-1963 Disease denotes zoonotic MESH:D015047
155 2068-2076 Species denotes patients Tax:9606
156 2112-2121 Species denotes 2019-nCoV Tax:2697049
157 2333-2339 Species denotes people Tax:9606
158 2404-2409 Species denotes human Tax:9606
159 2413-2418 Species denotes human Tax:9606
160 2123-2134 Species denotes Respiratory Tax:12814
161 2043-2052 Disease denotes infection MESH:D007239
162 2086-2095 Disease denotes pneumonia MESH:D011014
163 2096-2104 Disease denotes infected MESH:D007239
180 2476-2485 Species denotes 2019-nCoV Tax:2697049
181 2531-2539 Species denotes patients Tax:9606
182 2591-2608 Species denotes novel coronavirus Tax:2697049
183 2639-2648 Species denotes 2019-nCoV Tax:2697049
184 2817-2826 Species denotes SARSr-CoV Tax:694009
185 2828-2854 Species denotes SARS related coronaviruses Tax:694009
186 2866-2869 Species denotes CoV Tax:11118
187 2884-2897 Species denotes coronaviruses Tax:11118
188 2958-2967 Species denotes SARSr-CoV Tax:694009
189 2986-2995 Species denotes 2019-nCoV Tax:2697049
190 3012-3017 Species denotes human Tax:9606
191 2510-2521 Species denotes respiratory Tax:12814
192 3018-3029 Species denotes respiratory Tax:12814
193 2559-2568 Disease denotes pneumonia MESH:D011014
194 2871-2875 Disease denotes MERS MESH:D018352
195 3131-3136 CellLine denotes Huh-7 CVCL:0336
197 3200-3208 Species denotes patients Tax:9606
199 3573-3578 Species denotes human Tax:9606
202 3761-3770 Species denotes SARSr-CoV Tax:694009
203 3772-3781 Species denotes 2019-nCoV Tax:2697049
213 4003-4011 Species denotes children Tax:9606
214 4016-4023 Species denotes infants Tax:9606
215 4049-4058 Species denotes 2019-nCoV Tax:2697049
216 4102-4110 Species denotes patients Tax:9606
217 4150-4158 Species denotes children Tax:9606
219 3988-3997 Disease denotes infection MESH:D007239
220 4033-4041 Disease denotes infected MESH:D007239
221 4226-4231 Disease denotes Death MESH:D003643
228 4470-4478 Species denotes patients Tax:9606
229 4531-4539 Disease denotes diabetes MESH:D003920
230 4541-4553 Disease denotes hypertension MESH:D006973
231 4559-4582 Disease denotes cardiovascular diseases MESH:D002318
232 4614-4649 Disease denotes acute respiratory distress syndrome MESH:D012128
233 4651-4655 Disease denotes ARDS MESH:D012128