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PMC:7001239 / 7767-10674 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
106 475-527 Species denotes Middle East respiratory syndrome-related coronavirus Tax:1335626
147 2007-2012 Species denotes Human Tax:9606
101 86-99 Species denotes coronaviruses Tax:11118
102 208-217 Species denotes 2019-nCoV Tax:2697049
103 398-403 Species denotes human Tax:9606
104 407-412 Species denotes human Tax:9606
105 429-437 Species denotes SARS-CoV Tax:694009
107 529-537 Species denotes MERS-CoV Tax:1335626
108 558-566 Species denotes MERS-CoV Tax:1335626
109 661-666 Species denotes human Tax:9606
110 767-775 Species denotes MERS-CoV Tax:1335626
111 802-807 Species denotes human Tax:9606
112 811-816 Species denotes human Tax:9606
113 901-909 Species denotes SARS-CoV Tax:694009
114 958-963 Species denotes human Tax:9606
115 967-972 Species denotes human Tax:9606
116 1201-1210 Species denotes 2019-nCoV Tax:2697049
117 1225-1234 Species denotes 2019-nCoV Tax:2697049
119 1375-1397 Species denotes 2019 novel coronavirus Tax:2697049
122 1440-1492 Species denotes Middle East respiratory syndrome-related coronavirus Tax:1335626
123 1500-1553 Species denotes severe acute respiratory syndrome-related coronavirus Tax:694009
128 1782-1787 Species denotes human Tax:9606
129 1791-1796 Species denotes human Tax:9606
130 1813-1821 Species denotes SARS-CoV Tax:694009
131 1868-1877 Species denotes influenza Tax:11308
146 1906-1915 Species denotes 2019-nCoV Tax:2697049
148 2016-2021 Species denotes human Tax:9606
149 2038-2055 Species denotes influenza viruses Tax:11308
150 2242-2247 Species denotes human Tax:9606
151 2427-2440 Species denotes coronaviruses Tax:11118
152 2453-2470 Species denotes influenza viruses Tax:11308
153 2509-2518 Species denotes 2019-nCoV Tax:2697049
154 2755-2764 Species denotes 2019-nCoV Tax:2697049
155 2803-2812 Species denotes 2019-nCoV Tax:2697049
156 2820-2825 Species denotes human Tax:9606
157 1964-1973 Species denotes influenza Tax:11308
158 2221-2230 Species denotes influenza Tax:11308
159 2311-2320 Species denotes influenza Tax:11308

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T8 429-437 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 901-909 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 1494-1498 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 1500-1533 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T12 1813-1821 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T13 1868-1877 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T14 1964-1973 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T15 2038-2047 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T16 2221-2230 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T17 2311-2320 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T18 2453-2462 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T69 47-54 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T70 380-388 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T71 398-403 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T72 407-412 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T73 651-657 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T74 661-666 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T75 802-807 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T76 811-816 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T77 837-838 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 958-963 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T79 967-972 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T80 1248-1249 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 1321-1322 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 1418-1420 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T83 1720-1721 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 1782-1787 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T85 1791-1796 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T86 2007-2012 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T87 2016-2021 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T88 2048-2055 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T89 2108-2109 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 2138-2139 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 2242-2247 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T92 2463-2470 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T93 2820-2825 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T94 2901-2906 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T61 0-54 Sentence denotes Comparison with past emergences of respiratory viruses
T62 55-218 Sentence denotes Comparison with other emerging coronaviruses in the past allows to put into perspective the available information regarding the transmission patterns of 2019-nCoV.
T63 219-314 Sentence denotes Figure 3 shows the combinations of R0 and k that are most likely at this stage of the epidemic.
T64 315-543 Sentence denotes Our estimates of R0 and k are more similar to previous estimates focusing on early human-to-human transmission of SARS-CoV in Beijing and Singapore [7] than of Middle East respiratory syndrome-related coronavirus (MERS-CoV) [9].
T65 544-766 Sentence denotes The spread of MERS-CoV was characterised by small clusters of transmission following repeated instances of animal-to-human transmission events, mainly driven by the occurrence of superspreading events in hospital settings.
T66 767-860 Sentence denotes MERS-CoV could however not sustain human-to-human transmission beyond a few generations [12].
T67 861-1025 Sentence denotes Conversely, the international spread of SARS-CoV lasted for 9 months and was driven by sustained human-to-human transmission, with occasional superspreading events.
T68 1026-1156 Sentence denotes It led to more than 8,000 cases around the world and required extensive efforts by public health authorities to be contained [13].
T69 1157-1263 Sentence denotes Our assessment of the early transmission of 2019-nCoV suggests that 2019-nCoV might follow a similar path.
T70 1264-1433 Sentence denotes Figure 3 Proportion of simulated epidemics that lead to a cumulative incidence between 1,000 and 9,700 of the 2019 novel coronavirus outbreak, China, on 18 January 2020
T71 1434-1439 Sentence denotes MERS:
T72 1440-1554 Sentence denotes Middle East respiratory syndrome-related coronavirus; SARS: severe acute respiratory syndrome-related coronavirus.
T73 1555-1716 Sentence denotes This can be interpreted as the combinations of R0 and k values most compatible with the estimation of epidemic size before quarantine measures were put in place.
T74 1717-1887 Sentence denotes As a comparison, we show the estimates of R0 and k for the early human-to-human transmission of SARS-CoV in Singapore and Beijing and of 1918 pandemic influenza [7,9,14].
T75 1888-2006 Sentence denotes Our estimates for 2019-nCoV are also compatible with those of 1918 pandemic influenza, for which k was estimated [14].
T76 2007-2188 Sentence denotes Human-to-human transmission of influenza viruses is characterised by R0 values between 1.5 and 2 and a larger value of k, implying a more steady transmission without superspreading.
T77 2189-2407 Sentence denotes The emergence of new strains of influenza, for which human populations carried little to no immunity contrary to seasonal influenza, led to pandemics with different severity such as the ones in1918, 1957 1968 and 2009.
T78 2408-2645 Sentence denotes It is notable that coronaviruses differ from influenza viruses in many aspects, and evidence for the 2019-nCoV with respect to case fatality rate, transmissibility from asymptomatic individuals and speed of transmission is still limited.
T79 2646-2907 Sentence denotes Without speculating about possible consequences, the values of R0 and k found here during the early stage of 2019-nCoV emergence and the lack of immunity to 2019-nCoV in the human population leave open the possibility for pandemic circulation of this new virus.

2_test

Id Subject Object Predicate Lexical cue
32019669-16292310-29338350 464-465 16292310 denotes 7
32019669-26132768-29338351 540-541 26132768 denotes 9
32019669-23831141-29338352 856-858 23831141 denotes 12
32019669-17568476-29338353 1152-1154 17568476 denotes 13
32019669-16292310-29338354 1879-1880 16292310 denotes 7
32019669-26132768-29338355 1881-1882 26132768 denotes 9
32019669-21749971-29338356 1883-1885 21749971 denotes 14
32019669-21749971-29338357 2002-2004 21749971 denotes 14

MyTest

Id Subject Object Predicate Lexical cue
32019669-16292310-29338350 464-465 16292310 denotes 7
32019669-26132768-29338351 540-541 26132768 denotes 9
32019669-23831141-29338352 856-858 23831141 denotes 12
32019669-17568476-29338353 1152-1154 17568476 denotes 13
32019669-16292310-29338354 1879-1880 16292310 denotes 7
32019669-26132768-29338355 1881-1882 26132768 denotes 9
32019669-21749971-29338356 1883-1885 21749971 denotes 14
32019669-21749971-29338357 2002-2004 21749971 denotes 14