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PMC:7001239 / 6259-7765 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
71 146-151 Species denotes human Tax:9606
72 155-160 Species denotes human Tax:9606
73 177-186 Species denotes 2019-nCoV Tax:2697049
74 101-109 Disease denotes infected MESH:D007239
75 675-683 Disease denotes zoonotic MESH:D015047
77 778-800 Species denotes 2019 novel coronavirus Tax:2697049
80 883-888 Species denotes human Tax:9606
81 892-897 Species denotes human Tax:9606
83 1181-1203 Species denotes 2019 novel coronavirus Tax:2697049

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 654-659 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T56 119-121 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T57 146-151 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T58 155-160 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T59 352-353 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 615-617 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T61 823-825 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T62 883-888 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T63 892-897 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T64 962-963 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 1018-1019 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 1106-1107 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 1431-1432 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 1481-1483 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T5 849-861 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T45 0-58 Sentence denotes Transmission characteristics of the 2019 novel coronavirus
T46 59-278 Sentence denotes In order to reach between 1,000 and 9,700 infected cases by 18 January 2020, the early human-to-human transmission of 2019-nCoV was characterised by values of R0 around 2.2 (median value, with 90% high density interval:
T47 279-299 Sentence denotes 1.4–3.8) (Figure 1).
T48 300-415 Sentence denotes The observed data at this point are compatible with a large range of values for the dispersion parameter k (median:
T49 416-448 Sentence denotes 0.54, 90% high density interval:
T50 449-461 Sentence denotes 0.014–6.95).
T51 462-537 Sentence denotes However, our simulations suggest that very low values of k are less likely.
T52 538-701 Sentence denotes These estimates incorporate the uncertainty about the total epidemic size on 18 January 2020 and about the date and scale of the initial zoonotic event (Figure 2).
T53 702-838 Sentence denotes Figure 1 Values of R0 and k most compatible with the estimated size of the 2019 novel coronavirus epidemic in China, on 18 January 2020
T54 839-911 Sentence denotes The basic reproduction number R0 quantifies human-to-human transmission.
T55 912-1058 Sentence denotes The dispersion parameter k quantifies the risk of a superspreading event (lower values of k are linked to a higher probability of superspreading).
T56 1059-1129 Sentence denotes Note that the probability density of k implies a log10 transformation.
T57 1130-1230 Sentence denotes Figure 2 Illustration of the simulation strategy, 2019 novel coronavirus outbreak, China, 2019–2020
T58 1231-1322 Sentence denotes The lines represent the cumulative incidence of 480 simulations with R0 = 1.8 and k = 1.13.
T59 1323-1384 Sentence denotes The other parameters are left to vary according to the Table.
T60 1385-1506 Sentence denotes Among these simulated epidemics, 54.3% led to a cumulative incidence between 1,000 and 9,700 on 18 January 2020 (in red).