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PMC:7001239 / 4777-6257 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
61 1128-1131 Gene denotes ABC
62 138-143 Species denotes human Tax:9606
63 626-635 Species denotes 2019-nCoV Tax:2697049
64 119-127 Disease denotes zoonotic MESH:D015047
65 958-966 Disease denotes infected MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 636-643 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T41 3-4 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 128-134 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T43 138-143 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T44 392-393 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 531-534 http://purl.obolibrary.org/obo/CLO_0001562 denotes a 2
T46 531-534 http://purl.obolibrary.org/obo/CLO_0001563 denotes a 2
T47 556-558 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T48 623-625 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T49 711-713 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T50 772-773 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 940-941 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 1020-1022 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T53 1073-1074 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 1250-1259 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T55 1417-1419 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 1128-1131 Chemical denotes ABC http://purl.obolibrary.org/obo/CHEBI_421707

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T37 186-318 Sentence denotes An epidemic with several index cases can be considered as the aggregation of several independent epidemics with one index case each.
T38 319-472 Sentence denotes We sampled (with replacement) n of the one-index-case epidemics, sampled a date of onset for each index case and aggregated the epidemic curves together.
T39 473-649 Sentence denotes The sampling of the date of onset was done uniformly from a 2-week interval around 27 November 2019, in coherence with early phylogenetic analyses of 11 2019-nCoV genomes [10].
T40 650-862 Sentence denotes This step was repeated 100 times for each combination of R0 (22 points), k (20 points), D (8 points) and n (6 points) for a total of 2,112,000 full epidemics simulated that included the uncertainty on D, n and T.
T41 863-1069 Sentence denotes Finally, we calculated the proportion of stochastic simulations that reached a total number of infected cases within the interval between 1,000 and 9,700 by 18 January 2020, as estimated by Imai et al. [6].
T42 1070-1325 Sentence denotes In a process related to approximate Bayesian computation (ABC), the parameter value combinations that led to simulations within that interval were treated as approximations to the posterior distributions of the parameters with uniform prior distributions.
T43 1326-1421 Sentence denotes Model simulations and analyses were performed in the R software for statistical computing [11].
T44 1422-1480 Sentence denotes Code files are available on https://github.com/jriou/wcov.