PMC:6988269 / 7846-8725
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T20 | 344-347 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T21 | 453-456 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T22 | 501-505 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T23 | 593-597 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T24 | 629-633 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T25 | 732-735 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T18 | 351-359 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T19 | 351-355 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T20 | 723-731 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T21 | 723-727 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T70 | 105-110 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T71 | 254-260 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T72 | 462-463 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T73 | 501-505 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T74 | 571-578 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T75 | 593-597 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T76 | 629-633 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T26 | 21-32 | Chemical | denotes | application | http://purl.obolibrary.org/obo/CHEBI_33232 |
| T27 | 159-174 | Chemical | denotes | oligonucleotide | http://purl.obolibrary.org/obo/CHEBI_7754 |
| T28 | 873-878 | Chemical | denotes | probe | http://purl.obolibrary.org/obo/CHEBI_50406 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T63 | 0-38 | Sentence | denotes | Protocol options and application notes |
| T64 | 39-213 | Sentence | denotes | Laboratories participating in the evaluation used the TaqMan Fast Virus 1-Step Master Mix (Thermo Fisher) with the same oligonucleotide concentrations and cycling conditions. |
| T65 | 214-288 | Sentence | denotes | The QIAGEN One-Step RT-PCR Kit was also tested and found to be compatible. |
| T66 | 289-457 | Sentence | denotes | The intended cross-reactivity of all assays with viral RNA of SARS-CoV allows us to use the assays without having to rely on external sources of specific 2019-nCoV RNA. |
| T67 | 458-604 | Sentence | denotes | For a routine workflow, we recommend the E gene assay as the first-line screening tool, followed by confirmatory testing with the RdRp gene assay. |
| T68 | 605-778 | Sentence | denotes | Application of the RdRp gene assay with dual colour technology can discriminate 2019-nCoV (both probes positive) from SARS-CoV RNA if the latter is used as positive control. |
| T69 | 779-879 | Sentence | denotes | Alternatively, laboratories may choose to run the RdRp assay with only the 2019-nCoV-specific probe. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 141 | 125-128 | Gene | denotes | Mix | Gene:83881 |
| 142 | 241-244 | Gene | denotes | Kit | Gene:3815 |
| 143 | 159-174 | Chemical | denotes | oligonucleotide | MESH:D009841 |
| 146 | 351-359 | Species | denotes | SARS-CoV | Tax:694009 |
| 147 | 443-452 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 154 | 588-592 | Gene | denotes | RdRp | Gene:43740578 |
| 155 | 624-628 | Gene | denotes | RdRp | Gene:43740578 |
| 156 | 829-833 | Gene | denotes | RdRp | Gene:43740578 |
| 157 | 685-694 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 158 | 723-731 | Species | denotes | SARS-CoV | Tax:694009 |
| 159 | 854-863 | Species | denotes | 2019-nCoV | Tax:2697049 |