PMC:6988269 / 6534-7844
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T16 | 132-136 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T17 | 574-578 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T18 | 782-786 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T19 | 1006-1010 | Body_part | denotes | C; S | http://purl.org/sig/ont/fma/fma284995 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T14 | 290-294 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T15 | 431-439 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T16 | 431-435 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T17 | 448-452 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T54 | 132-136 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T55 | 211-213 | http://purl.obolibrary.org/obo/CLO_0008307 | denotes | P2 |
| T56 | 336-338 | http://purl.obolibrary.org/obo/CLO_0008285 | denotes | P1 |
| T57 | 350-352 | http://purl.obolibrary.org/obo/CLO_0008285 | denotes | P1 |
| T58 | 390-393 | http://purl.obolibrary.org/obo/NCBITaxon_9596 | denotes | Pan |
| T59 | 444-447 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T60 | 503-505 | http://purl.obolibrary.org/obo/CLO_0008307 | denotes | P2 |
| T61 | 574-578 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T62 | 782-786 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T63 | 977-978 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T64 | 984-985 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T65 | 996-997 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T66 | 1004-1005 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T67 | 1072-1073 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T68 | 1183-1187 | http://purl.obolibrary.org/obo/CLO_0001550 | denotes | a 10 |
| T69 | 1252-1253 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T19 | 84-99 | Chemical | denotes | Oligonucleotide | http://purl.obolibrary.org/obo/CHEBI_7754 |
| T20 | 211-213 | Chemical | denotes | P2 | http://purl.obolibrary.org/obo/CHEBI_33472 |
| T21 | 336-338 | Chemical | denotes | P1 | http://purl.obolibrary.org/obo/CHEBI_60949 |
| T22 | 350-352 | Chemical | denotes | P1 | http://purl.obolibrary.org/obo/CHEBI_60949 |
| T23 | 503-505 | Chemical | denotes | P2 | http://purl.obolibrary.org/obo/CHEBI_33472 |
| T24 | 1024-1044 | Chemical | denotes | 6-carboxyfluorescein | http://purl.obolibrary.org/obo/CHEBI_39073 |
| T25 | 1204-1212 | Chemical | denotes | solution | http://purl.obolibrary.org/obo/CHEBI_75958 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10 | 127-131 | http://purl.obolibrary.org/obo/GO_0003968 | denotes | RdRP |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T47 | 0-72 | Sentence | denotes | Table 1 Primers and probes, real-time RT-PCR for 2019 novel coronavirus |
| T48 | 73-126 | Sentence | denotes | Assay/use Oligonucleotide Sequencea Concentrationb |
| T49 | 127-199 | Sentence | denotes | RdRP gene RdRp_SARSr-F GTGARATGGTCATGTGTGGCGG Use 600 nM per reaction |
| T50 | 200-338 | Sentence | denotes | RdRp_SARSr-P2 FAM-CAGGTGGAACCTCATCAGGAGATGC-BBQ Specific for 2019-nCoV, will not detect SARS-CoV.Use 100 nM per reaction and mix with P1 |
| T51 | 339-505 | Sentence | denotes | RdRP_SARSr-P1 FAM-CCAGGTGGWACRTCATCMGGTGATGC-BBQ Pan Sarbeco-Probe will detect 2019-nCoV, SARS-CoV and bat-SARS-related CoVs.Use 100 nM per reaction and mix with P2 |
| T52 | 506-571 | Sentence | denotes | RdRp_SARSr-R CARATGTTAAASACACTATTAGCATA Use 800 nM per reaction |
| T53 | 572-644 | Sentence | denotes | E gene E_Sarbeco_F ACAGGTACGTTAATAGTTAATAGCGT Use 400 nm per reaction |
| T54 | 645-718 | Sentence | denotes | E_Sarbeco_P1 FAM-ACACTAGCCATCCTTACTGCGCTTCG-BBQ Use 200 nm per reaction |
| T55 | 719-779 | Sentence | denotes | E_Sarbeco_R ATATTGCAGCAGTACGCACACA Use 400 nm per reaction |
| T56 | 780-845 | Sentence | denotes | N gene N_Sarbeco_F CACATTGGCACCCGCAATC Use 600 nm per reaction |
| T57 | 846-917 | Sentence | denotes | N_Sarbeco_P FAM-ACTTCCTCAAGGAACAACATTGCCA-BBQ Use 200 nm per reaction |
| T58 | 918-976 | Sentence | denotes | N_Sarbeco_R GAGGAACGAGAAGAGGCTTG Use 800 nm per reaction |
| T59 | 977-1018 | Sentence | denotes | a W is A/T; R is G/A; M is A/C; S is G/C. |
| T60 | 1019-1023 | Sentence | denotes | FAM: |
| T61 | 1024-1071 | Sentence | denotes | 6-carboxyfluorescein; BBQ: blackberry quencher. |
| T62 | 1072-1310 | Sentence | denotes | b Optimised concentrations are given in nanomol per litre (nM) based on the final reaction mix, e.g. 1.5 µL of a 10 µM primer stock solution per 25 µL total reaction volume yields a final concentration of 600 nM as indicated in the table. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 125 | 494-497 | Gene | denotes | mix | Gene:83881 |
| 126 | 327-330 | Gene | denotes | mix | Gene:83881 |
| 127 | 263-272 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 128 | 290-298 | Species | denotes | SARS-CoV | Tax:694009 |
| 129 | 420-429 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 130 | 431-439 | Species | denotes | SARS-CoV | Tax:694009 |
| 131 | 448-465 | Species | denotes | SARS-related CoVs | Tax:694009 |
| 133 | 50-72 | Species | denotes | 2019 novel coronavirus | Tax:2697049 |
| 135 | 1024-1044 | Chemical | denotes | 6-carboxyfluorescein | MESH:C024098 |
| 137 | 1163-1166 | Gene | denotes | mix | Gene:83881 |