PMC:6988269 / 17855-18622 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T85","span":{"begin":192,"end":198},"obj":"Body_part"},{"id":"T86","span":{"begin":210,"end":213},"obj":"Body_part"},{"id":"T87","span":{"begin":324,"end":327},"obj":"Body_part"},{"id":"T88","span":{"begin":469,"end":475},"obj":"Body_part"},{"id":"T89","span":{"begin":487,"end":490},"obj":"Body_part"},{"id":"T90","span":{"begin":553,"end":556},"obj":"Body_part"},{"id":"T91","span":{"begin":694,"end":700},"obj":"Body_part"},{"id":"T92","span":{"begin":712,"end":715},"obj":"Body_part"}],"attributes":[{"id":"A85","pred":"fma_id","subj":"T85","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A86","pred":"fma_id","subj":"T86","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A87","pred":"fma_id","subj":"T87","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A88","pred":"fma_id","subj":"T88","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A89","pred":"fma_id","subj":"T89","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A90","pred":"fma_id","subj":"T90","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A91","pred":"fma_id","subj":"T91","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A92","pred":"fma_id","subj":"T92","obj":"http://purl.org/sig/ont/fma/fma67095"}],"text":"a For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T6","span":{"begin":192,"end":198},"obj":"Body_part"},{"id":"T7","span":{"begin":469,"end":475},"obj":"Body_part"},{"id":"T8","span":{"begin":694,"end":700},"obj":"Body_part"}],"attributes":[{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A7","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A8","pred":"uberon_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"}],"text":"a For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T185","span":{"begin":0,"end":1},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T186","span":{"begin":28,"end":35},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T187","span":{"begin":50,"end":55},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T188","span":{"begin":134,"end":135},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T189","span":{"begin":169,"end":174},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T190","span":{"begin":184,"end":191},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T191","span":{"begin":280,"end":285},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T192","span":{"begin":286,"end":292},"obj":"http://purl.obolibrary.org/obo/UBERON_0001005"},{"id":"T193","span":{"begin":293,"end":303},"obj":"http://purl.obolibrary.org/obo/CL_0000066"},{"id":"T194","span":{"begin":446,"end":451},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T195","span":{"begin":461,"end":468},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T196","span":{"begin":671,"end":676},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T197","span":{"begin":686,"end":693},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"}],"text":"a For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

{"project":"LitCovid-sentences","denotations":[{"id":"T172","span":{"begin":0,"end":133},"obj":"Sentence"},{"id":"T173","span":{"begin":134,"end":199},"obj":"Sentence"},{"id":"T174","span":{"begin":200,"end":265},"obj":"Sentence"},{"id":"T175","span":{"begin":266,"end":312},"obj":"Sentence"},{"id":"T176","span":{"begin":313,"end":394},"obj":"Sentence"},{"id":"T177","span":{"begin":395,"end":476},"obj":"Sentence"},{"id":"T178","span":{"begin":477,"end":542},"obj":"Sentence"},{"id":"T179","span":{"begin":543,"end":623},"obj":"Sentence"},{"id":"T180","span":{"begin":624,"end":701},"obj":"Sentence"},{"id":"T181","span":{"begin":702,"end":767},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"a For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

{"project":"LitCovid-PubTator","denotations":[{"id":"329","span":{"begin":169,"end":174},"obj":"Species"},{"id":"332","span":{"begin":221,"end":223},"obj":"Gene"},{"id":"333","span":{"begin":280,"end":285},"obj":"Species"},{"id":"336","span":{"begin":335,"end":337},"obj":"Gene"},{"id":"337","span":{"begin":446,"end":451},"obj":"Species"},{"id":"339","span":{"begin":498,"end":500},"obj":"Gene"},{"id":"342","span":{"begin":564,"end":566},"obj":"Gene"},{"id":"343","span":{"begin":671,"end":676},"obj":"Species"},{"id":"345","span":{"begin":723,"end":725},"obj":"Gene"}],"attributes":[{"id":"A329","pred":"tao:has_database_id","subj":"329","obj":"Tax:9606"},{"id":"A332","pred":"tao:has_database_id","subj":"332","obj":"Gene:21832"},{"id":"A333","pred":"tao:has_database_id","subj":"333","obj":"Tax:9606"},{"id":"A336","pred":"tao:has_database_id","subj":"336","obj":"Gene:21832"},{"id":"A337","pred":"tao:has_database_id","subj":"337","obj":"Tax:9606"},{"id":"A339","pred":"tao:has_database_id","subj":"339","obj":"Gene:21832"},{"id":"A342","pred":"tao:has_database_id","subj":"342","obj":"Gene:21832"},{"id":"A343","pred":"tao:has_database_id","subj":"343","obj":"Tax:9606"},{"id":"A345","pred":"tao:has_database_id","subj":"345","obj":"Gene:21832"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"a For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}