PMC:6988269 / 16989-18622 JSONTXT

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    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T83","span":{"begin":81,"end":85},"obj":"Body_part"},{"id":"T84","span":{"begin":165,"end":169},"obj":"Body_part"},{"id":"T85","span":{"begin":1058,"end":1064},"obj":"Body_part"},{"id":"T86","span":{"begin":1076,"end":1079},"obj":"Body_part"},{"id":"T87","span":{"begin":1190,"end":1193},"obj":"Body_part"},{"id":"T88","span":{"begin":1335,"end":1341},"obj":"Body_part"},{"id":"T89","span":{"begin":1353,"end":1356},"obj":"Body_part"},{"id":"T90","span":{"begin":1419,"end":1422},"obj":"Body_part"},{"id":"T91","span":{"begin":1560,"end":1566},"obj":"Body_part"},{"id":"T92","span":{"begin":1578,"end":1581},"obj":"Body_part"}],"attributes":[{"id":"A83","pred":"fma_id","subj":"T83","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A84","pred":"fma_id","subj":"T84","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A85","pred":"fma_id","subj":"T85","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A86","pred":"fma_id","subj":"T86","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A87","pred":"fma_id","subj":"T87","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A88","pred":"fma_id","subj":"T88","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A89","pred":"fma_id","subj":"T89","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A90","pred":"fma_id","subj":"T90","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A91","pred":"fma_id","subj":"T91","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A92","pred":"fma_id","subj":"T92","obj":"http://purl.org/sig/ont/fma/fma67095"}],"text":"Table 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310)\nClinical samples with known viruses Clinical samplesa Virus isolatesb\nHCoV-HKU1 14 1c\nHCoV-OC43 16 2d\nHCoV-NL63 14 1e\nHCoV-229E 18 2f\nMERS-CoV 5 1g\nInfluenza A(H1N1)pdm09 17 1\nInfluenza A(H3N2) 16 1\nInfluenza A (untyped) 11 NA\nInfluenza A(H5N1) 1 1\nInfluenza A(H7N9) 0 1\nInfluenza B (Victoria or Yamagata) 31 1\nRhinovirus/enterovirus 31 NA\nRespiratory syncytial virus (A/B) 33 NA\nParainfluenza 1 virus 12 NA\nParainfluenza 2 virus 11 NA\nParainfluenza 3 virus 14 NA\nParainfluenza 4 virus 11 NA\nHuman metapneumovirus 16 NA\nAdenovirus 13 1\nHuman bocavirus 6 NA\nLegionella spp. 3 NA\nMycoplasma spp. 4 NA\nTotal clinical samples 297 NA\na For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

    LitCovid-PD-UBERON

    {"project":"LitCovid-PD-UBERON","denotations":[{"id":"T6","span":{"begin":1058,"end":1064},"obj":"Body_part"},{"id":"T7","span":{"begin":1335,"end":1341},"obj":"Body_part"},{"id":"T8","span":{"begin":1560,"end":1566},"obj":"Body_part"}],"attributes":[{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A7","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A8","pred":"uberon_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"}],"text":"Table 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310)\nClinical samples with known viruses Clinical samplesa Virus isolatesb\nHCoV-HKU1 14 1c\nHCoV-OC43 16 2d\nHCoV-NL63 14 1e\nHCoV-229E 18 2f\nMERS-CoV 5 1g\nInfluenza A(H1N1)pdm09 17 1\nInfluenza A(H3N2) 16 1\nInfluenza A (untyped) 11 NA\nInfluenza A(H5N1) 1 1\nInfluenza A(H7N9) 0 1\nInfluenza B (Victoria or Yamagata) 31 1\nRhinovirus/enterovirus 31 NA\nRespiratory syncytial virus (A/B) 33 NA\nParainfluenza 1 virus 12 NA\nParainfluenza 2 virus 11 NA\nParainfluenza 3 virus 14 NA\nParainfluenza 4 virus 11 NA\nHuman metapneumovirus 16 NA\nAdenovirus 13 1\nHuman bocavirus 6 NA\nLegionella spp. 3 NA\nMycoplasma spp. 4 NA\nTotal clinical samples 297 NA\na For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T55","span":{"begin":347,"end":364},"obj":"Disease"},{"id":"T56","span":{"begin":377,"end":386},"obj":"Disease"},{"id":"T57","span":{"begin":402,"end":411},"obj":"Disease"},{"id":"T58","span":{"begin":433,"end":442},"obj":"Disease"},{"id":"T59","span":{"begin":457,"end":466},"obj":"Disease"},{"id":"T60","span":{"begin":481,"end":490},"obj":"Disease"},{"id":"T61","span":{"begin":787,"end":797},"obj":"Disease"}],"attributes":[{"id":"A55","pred":"mondo_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/MONDO_0005460"},{"id":"A56","pred":"mondo_id","subj":"T56","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A57","pred":"mondo_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A58","pred":"mondo_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A59","pred":"mondo_id","subj":"T59","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A60","pred":"mondo_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A61","pred":"mondo_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/MONDO_0005824"}],"text":"Table 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310)\nClinical samples with known viruses Clinical samplesa Virus isolatesb\nHCoV-HKU1 14 1c\nHCoV-OC43 16 2d\nHCoV-NL63 14 1e\nHCoV-229E 18 2f\nMERS-CoV 5 1g\nInfluenza A(H1N1)pdm09 17 1\nInfluenza A(H3N2) 16 1\nInfluenza A (untyped) 11 NA\nInfluenza A(H5N1) 1 1\nInfluenza A(H7N9) 0 1\nInfluenza B (Victoria or Yamagata) 31 1\nRhinovirus/enterovirus 31 NA\nRespiratory syncytial virus (A/B) 33 NA\nParainfluenza 1 virus 12 NA\nParainfluenza 2 virus 11 NA\nParainfluenza 3 virus 14 NA\nParainfluenza 4 virus 11 NA\nHuman metapneumovirus 16 NA\nAdenovirus 13 1\nHuman bocavirus 6 NA\nLegionella spp. 3 NA\nMycoplasma spp. 4 NA\nTotal clinical samples 297 NA\na For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T157","span":{"begin":9,"end":14},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T158","span":{"begin":36,"end":43},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T159","span":{"begin":48,"end":56},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_2"},{"id":"T160","span":{"begin":81,"end":85},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T161","span":{"begin":165,"end":169},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T162","span":{"begin":215,"end":222},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T163","span":{"begin":243,"end":248},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T164","span":{"begin":324,"end":326},"obj":"http://purl.obolibrary.org/obo/CLO_0050510"},{"id":"T165","span":{"begin":357,"end":358},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T166","span":{"begin":387,"end":388},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T167","span":{"begin":412,"end":413},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T168","span":{"begin":425,"end":427},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T169","span":{"begin":443,"end":444},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T170","span":{"begin":452,"end":456},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T171","span":{"begin":467,"end":468},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T172","span":{"begin":491,"end":492},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T173","span":{"begin":517,"end":522},"obj":"http://purl.obolibrary.org/obo/CLO_0001006"},{"id":"T174","span":{"begin":576,"end":581},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T175","span":{"begin":583,"end":584},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T176","span":{"begin":585,"end":586},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T177","span":{"begin":612,"end":617},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T178","span":{"begin":642,"end":647},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T179","span":{"begin":649,"end":651},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T180","span":{"begin":672,"end":677},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T181","span":{"begin":702,"end":707},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T182","span":{"begin":709,"end":711},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T183","span":{"begin":716,"end":721},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T184","span":{"begin":764,"end":769},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T185","span":{"begin":866,"end":867},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T186","span":{"begin":894,"end":901},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T187","span":{"begin":916,"end":921},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T188","span":{"begin":1000,"end":1001},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T189","span":{"begin":1035,"end":1040},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T190","span":{"begin":1050,"end":1057},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T191","span":{"begin":1146,"end":1151},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T192","span":{"begin":1152,"end":1158},"obj":"http://purl.obolibrary.org/obo/UBERON_0001005"},{"id":"T193","span":{"begin":1159,"end":1169},"obj":"http://purl.obolibrary.org/obo/CL_0000066"},{"id":"T194","span":{"begin":1312,"end":1317},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T195","span":{"begin":1327,"end":1334},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T196","span":{"begin":1537,"end":1542},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T197","span":{"begin":1552,"end":1559},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"}],"text":"Table 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310)\nClinical samples with known viruses Clinical samplesa Virus isolatesb\nHCoV-HKU1 14 1c\nHCoV-OC43 16 2d\nHCoV-NL63 14 1e\nHCoV-229E 18 2f\nMERS-CoV 5 1g\nInfluenza A(H1N1)pdm09 17 1\nInfluenza A(H3N2) 16 1\nInfluenza A (untyped) 11 NA\nInfluenza A(H5N1) 1 1\nInfluenza A(H7N9) 0 1\nInfluenza B (Victoria or Yamagata) 31 1\nRhinovirus/enterovirus 31 NA\nRespiratory syncytial virus (A/B) 33 NA\nParainfluenza 1 virus 12 NA\nParainfluenza 2 virus 11 NA\nParainfluenza 3 virus 14 NA\nParainfluenza 4 virus 11 NA\nHuman metapneumovirus 16 NA\nAdenovirus 13 1\nHuman bocavirus 6 NA\nLegionella spp. 3 NA\nMycoplasma spp. 4 NA\nTotal clinical samples 297 NA\na For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T53","span":{"begin":430,"end":432},"obj":"Chemical"},{"id":"T54","span":{"begin":551,"end":553},"obj":"Chemical"},{"id":"T55","span":{"begin":593,"end":595},"obj":"Chemical"},{"id":"T56","span":{"begin":623,"end":625},"obj":"Chemical"},{"id":"T57","span":{"begin":653,"end":655},"obj":"Chemical"},{"id":"T58","span":{"begin":683,"end":685},"obj":"Chemical"},{"id":"T59","span":{"begin":713,"end":715},"obj":"Chemical"},{"id":"T60","span":{"begin":743,"end":745},"obj":"Chemical"},{"id":"T61","span":{"begin":784,"end":786},"obj":"Chemical"},{"id":"T62","span":{"begin":807,"end":809},"obj":"Chemical"},{"id":"T63","span":{"begin":830,"end":832},"obj":"Chemical"},{"id":"T64","span":{"begin":863,"end":865},"obj":"Chemical"}],"attributes":[{"id":"A53","pred":"chebi_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A54","pred":"chebi_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A55","pred":"chebi_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A56","pred":"chebi_id","subj":"T56","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A57","pred":"chebi_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A58","pred":"chebi_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A59","pred":"chebi_id","subj":"T59","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A60","pred":"chebi_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A61","pred":"chebi_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A62","pred":"chebi_id","subj":"T62","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A63","pred":"chebi_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A64","pred":"chebi_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"}],"text":"Table 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310)\nClinical samples with known viruses Clinical samplesa Virus isolatesb\nHCoV-HKU1 14 1c\nHCoV-OC43 16 2d\nHCoV-NL63 14 1e\nHCoV-229E 18 2f\nMERS-CoV 5 1g\nInfluenza A(H1N1)pdm09 17 1\nInfluenza A(H3N2) 16 1\nInfluenza A (untyped) 11 NA\nInfluenza A(H5N1) 1 1\nInfluenza A(H7N9) 0 1\nInfluenza B (Victoria or Yamagata) 31 1\nRhinovirus/enterovirus 31 NA\nRespiratory syncytial virus (A/B) 33 NA\nParainfluenza 1 virus 12 NA\nParainfluenza 2 virus 11 NA\nParainfluenza 3 virus 14 NA\nParainfluenza 4 virus 11 NA\nHuman metapneumovirus 16 NA\nAdenovirus 13 1\nHuman bocavirus 6 NA\nLegionella spp. 3 NA\nMycoplasma spp. 4 NA\nTotal clinical samples 297 NA\na For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T145","span":{"begin":0,"end":186},"obj":"Sentence"},{"id":"T146","span":{"begin":187,"end":258},"obj":"Sentence"},{"id":"T147","span":{"begin":259,"end":276},"obj":"Sentence"},{"id":"T148","span":{"begin":277,"end":294},"obj":"Sentence"},{"id":"T149","span":{"begin":295,"end":312},"obj":"Sentence"},{"id":"T150","span":{"begin":313,"end":330},"obj":"Sentence"},{"id":"T151","span":{"begin":331,"end":346},"obj":"Sentence"},{"id":"T152","span":{"begin":347,"end":376},"obj":"Sentence"},{"id":"T153","span":{"begin":377,"end":401},"obj":"Sentence"},{"id":"T154","span":{"begin":402,"end":432},"obj":"Sentence"},{"id":"T155","span":{"begin":433,"end":456},"obj":"Sentence"},{"id":"T156","span":{"begin":457,"end":480},"obj":"Sentence"},{"id":"T157","span":{"begin":481,"end":522},"obj":"Sentence"},{"id":"T158","span":{"begin":523,"end":553},"obj":"Sentence"},{"id":"T159","span":{"begin":554,"end":595},"obj":"Sentence"},{"id":"T160","span":{"begin":596,"end":625},"obj":"Sentence"},{"id":"T161","span":{"begin":626,"end":655},"obj":"Sentence"},{"id":"T162","span":{"begin":656,"end":685},"obj":"Sentence"},{"id":"T163","span":{"begin":686,"end":715},"obj":"Sentence"},{"id":"T164","span":{"begin":716,"end":745},"obj":"Sentence"},{"id":"T165","span":{"begin":746,"end":763},"obj":"Sentence"},{"id":"T166","span":{"begin":764,"end":786},"obj":"Sentence"},{"id":"T167","span":{"begin":787,"end":802},"obj":"Sentence"},{"id":"T168","span":{"begin":804,"end":809},"obj":"Sentence"},{"id":"T169","span":{"begin":810,"end":825},"obj":"Sentence"},{"id":"T170","span":{"begin":827,"end":832},"obj":"Sentence"},{"id":"T171","span":{"begin":833,"end":865},"obj":"Sentence"},{"id":"T172","span":{"begin":866,"end":999},"obj":"Sentence"},{"id":"T173","span":{"begin":1000,"end":1065},"obj":"Sentence"},{"id":"T174","span":{"begin":1066,"end":1131},"obj":"Sentence"},{"id":"T175","span":{"begin":1132,"end":1178},"obj":"Sentence"},{"id":"T176","span":{"begin":1179,"end":1260},"obj":"Sentence"},{"id":"T177","span":{"begin":1261,"end":1342},"obj":"Sentence"},{"id":"T178","span":{"begin":1343,"end":1408},"obj":"Sentence"},{"id":"T179","span":{"begin":1409,"end":1489},"obj":"Sentence"},{"id":"T180","span":{"begin":1490,"end":1567},"obj":"Sentence"},{"id":"T181","span":{"begin":1568,"end":1633},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310)\nClinical samples with known viruses Clinical samplesa Virus isolatesb\nHCoV-HKU1 14 1c\nHCoV-OC43 16 2d\nHCoV-NL63 14 1e\nHCoV-229E 18 2f\nMERS-CoV 5 1g\nInfluenza A(H1N1)pdm09 17 1\nInfluenza A(H3N2) 16 1\nInfluenza A (untyped) 11 NA\nInfluenza A(H5N1) 1 1\nInfluenza A(H7N9) 0 1\nInfluenza B (Victoria or Yamagata) 31 1\nRhinovirus/enterovirus 31 NA\nRespiratory syncytial virus (A/B) 33 NA\nParainfluenza 1 virus 12 NA\nParainfluenza 2 virus 11 NA\nParainfluenza 3 virus 14 NA\nParainfluenza 4 virus 11 NA\nHuman metapneumovirus 16 NA\nAdenovirus 13 1\nHuman bocavirus 6 NA\nLegionella spp. 3 NA\nMycoplasma spp. 4 NA\nTotal clinical samples 297 NA\na For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"309","span":{"begin":259,"end":268},"obj":"Species"},{"id":"310","span":{"begin":277,"end":286},"obj":"Species"},{"id":"311","span":{"begin":295,"end":304},"obj":"Species"},{"id":"312","span":{"begin":313,"end":322},"obj":"Species"},{"id":"313","span":{"begin":331,"end":339},"obj":"Species"},{"id":"314","span":{"begin":359,"end":363},"obj":"Species"},{"id":"315","span":{"begin":389,"end":393},"obj":"Species"},{"id":"316","span":{"begin":523,"end":533},"obj":"Species"},{"id":"317","span":{"begin":554,"end":584},"obj":"Species"},{"id":"318","span":{"begin":716,"end":737},"obj":"Species"},{"id":"319","span":{"begin":746,"end":756},"obj":"Species"},{"id":"320","span":{"begin":764,"end":779},"obj":"Species"},{"id":"321","span":{"begin":469,"end":473},"obj":"CellLine"},{"id":"325","span":{"begin":160,"end":164},"obj":"Gene"},{"id":"326","span":{"begin":131,"end":153},"obj":"Species"},{"id":"327","span":{"begin":24,"end":35},"obj":"Species"},{"id":"329","span":{"begin":1035,"end":1040},"obj":"Species"},{"id":"332","span":{"begin":1087,"end":1089},"obj":"Gene"},{"id":"333","span":{"begin":1146,"end":1151},"obj":"Species"},{"id":"336","span":{"begin":1201,"end":1203},"obj":"Gene"},{"id":"337","span":{"begin":1312,"end":1317},"obj":"Species"},{"id":"339","span":{"begin":1364,"end":1366},"obj":"Gene"},{"id":"342","span":{"begin":1430,"end":1432},"obj":"Gene"},{"id":"343","span":{"begin":1537,"end":1542},"obj":"Species"},{"id":"345","span":{"begin":1589,"end":1591},"obj":"Gene"}],"attributes":[{"id":"A309","pred":"tao:has_database_id","subj":"309","obj":"Tax:290028"},{"id":"A310","pred":"tao:has_database_id","subj":"310","obj":"Tax:31631"},{"id":"A311","pred":"tao:has_database_id","subj":"311","obj":"Tax:277944"},{"id":"A312","pred":"tao:has_database_id","subj":"312","obj":"Tax:11137"},{"id":"A313","pred":"tao:has_database_id","subj":"313","obj":"Tax:1335626"},{"id":"A314","pred":"tao:has_database_id","subj":"314","obj":"Tax:114727"},{"id":"A315","pred":"tao:has_database_id","subj":"315","obj":"Tax:119210"},{"id":"A316","pred":"tao:has_database_id","subj":"316","obj":"Tax:12059"},{"id":"A317","pred":"tao:has_database_id","subj":"317","obj":"Tax:1439707"},{"id":"A318","pred":"tao:has_database_id","subj":"318","obj":"Tax:162145"},{"id":"A319","pred":"tao:has_database_id","subj":"319","obj":"Tax:10508"},{"id":"A320","pred":"tao:has_database_id","subj":"320","obj":"Tax:329641"},{"id":"A321","pred":"tao:has_database_id","subj":"321","obj":"CVCL:0452"},{"id":"A325","pred":"tao:has_database_id","subj":"325","obj":"Gene:43740578"},{"id":"A326","pred":"tao:has_database_id","subj":"326","obj":"Tax:2697049"},{"id":"A327","pred":"tao:has_database_id","subj":"327","obj":"Tax:1439707"},{"id":"A329","pred":"tao:has_database_id","subj":"329","obj":"Tax:9606"},{"id":"A332","pred":"tao:has_database_id","subj":"332","obj":"Gene:21832"},{"id":"A333","pred":"tao:has_database_id","subj":"333","obj":"Tax:9606"},{"id":"A336","pred":"tao:has_database_id","subj":"336","obj":"Gene:21832"},{"id":"A337","pred":"tao:has_database_id","subj":"337","obj":"Tax:9606"},{"id":"A339","pred":"tao:has_database_id","subj":"339","obj":"Gene:21832"},{"id":"A342","pred":"tao:has_database_id","subj":"342","obj":"Gene:21832"},{"id":"A343","pred":"tao:has_database_id","subj":"343","obj":"Tax:9606"},{"id":"A345","pred":"tao:has_database_id","subj":"345","obj":"Gene:21832"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310)\nClinical samples with known viruses Clinical samplesa Virus isolatesb\nHCoV-HKU1 14 1c\nHCoV-OC43 16 2d\nHCoV-NL63 14 1e\nHCoV-229E 18 2f\nMERS-CoV 5 1g\nInfluenza A(H1N1)pdm09 17 1\nInfluenza A(H3N2) 16 1\nInfluenza A (untyped) 11 NA\nInfluenza A(H5N1) 1 1\nInfluenza A(H7N9) 0 1\nInfluenza B (Victoria or Yamagata) 31 1\nRhinovirus/enterovirus 31 NA\nRespiratory syncytial virus (A/B) 33 NA\nParainfluenza 1 virus 12 NA\nParainfluenza 2 virus 11 NA\nParainfluenza 3 virus 14 NA\nParainfluenza 4 virus 11 NA\nHuman metapneumovirus 16 NA\nAdenovirus 13 1\nHuman bocavirus 6 NA\nLegionella spp. 3 NA\nMycoplasma spp. 4 NA\nTotal clinical samples 297 NA\na For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}