PMC:6988269 / 16989-18622
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T83 | 81-85 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T84 | 165-169 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T85 | 1058-1064 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
T86 | 1076-1079 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T87 | 1190-1193 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T88 | 1335-1341 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
T89 | 1353-1356 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T90 | 1419-1422 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T91 | 1560-1566 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
T92 | 1578-1581 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T6 | 1058-1064 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
T7 | 1335-1341 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
T8 | 1560-1566 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T55 | 347-364 | Disease | denotes | Influenza A(H1N1) | http://purl.obolibrary.org/obo/MONDO_0005460 |
T56 | 377-386 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T57 | 402-411 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T58 | 433-442 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T59 | 457-466 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T60 | 481-490 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T61 | 787-797 | Disease | denotes | Legionella | http://purl.obolibrary.org/obo/MONDO_0005824 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T157 | 9-14 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Tests |
T158 | 36-43 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
T159 | 48-56 | http://purl.obolibrary.org/obo/NCBITaxon_2 | denotes | bacteria |
T160 | 81-85 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
T161 | 165-169 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T162 | 215-222 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
T163 | 243-248 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
T164 | 324-326 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
T165 | 357-358 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T166 | 387-388 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T167 | 412-413 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T168 | 425-427 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T169 | 443-444 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T170 | 452-456 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 1 1 |
T171 | 467-468 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T172 | 491-492 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T173 | 517-522 | http://purl.obolibrary.org/obo/CLO_0001006 | denotes | 31 1 |
T174 | 576-581 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T175 | 583-584 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T176 | 585-586 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T177 | 612-617 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T178 | 642-647 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T179 | 649-651 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T180 | 672-677 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T181 | 702-707 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T182 | 709-711 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T183 | 716-721 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
T184 | 764-769 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
T185 | 866-867 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T186 | 894-901 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
T187 | 916-921 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T188 | 1000-1001 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
T189 | 1035-1040 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T190 | 1050-1057 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
T191 | 1146-1151 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T192 | 1152-1158 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | airway |
T193 | 1159-1169 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
T194 | 1312-1317 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T195 | 1327-1334 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
T196 | 1537-1542 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T197 | 1552-1559 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T53 | 430-432 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T54 | 551-553 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T55 | 593-595 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T56 | 623-625 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T57 | 653-655 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T58 | 683-685 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T59 | 713-715 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T60 | 743-745 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T61 | 784-786 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T62 | 807-809 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T63 | 830-832 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T64 | 863-865 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T145 | 0-186 | Sentence | denotes | Table 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310) |
T146 | 187-258 | Sentence | denotes | Clinical samples with known viruses Clinical samplesa Virus isolatesb |
T147 | 259-276 | Sentence | denotes | HCoV-HKU1 14 1c |
T148 | 277-294 | Sentence | denotes | HCoV-OC43 16 2d |
T149 | 295-312 | Sentence | denotes | HCoV-NL63 14 1e |
T150 | 313-330 | Sentence | denotes | HCoV-229E 18 2f |
T151 | 331-346 | Sentence | denotes | MERS-CoV 5 1g |
T152 | 347-376 | Sentence | denotes | Influenza A(H1N1)pdm09 17 1 |
T153 | 377-401 | Sentence | denotes | Influenza A(H3N2) 16 1 |
T154 | 402-432 | Sentence | denotes | Influenza A (untyped) 11 NA |
T155 | 433-456 | Sentence | denotes | Influenza A(H5N1) 1 1 |
T156 | 457-480 | Sentence | denotes | Influenza A(H7N9) 0 1 |
T157 | 481-522 | Sentence | denotes | Influenza B (Victoria or Yamagata) 31 1 |
T158 | 523-553 | Sentence | denotes | Rhinovirus/enterovirus 31 NA |
T159 | 554-595 | Sentence | denotes | Respiratory syncytial virus (A/B) 33 NA |
T160 | 596-625 | Sentence | denotes | Parainfluenza 1 virus 12 NA |
T161 | 626-655 | Sentence | denotes | Parainfluenza 2 virus 11 NA |
T162 | 656-685 | Sentence | denotes | Parainfluenza 3 virus 14 NA |
T163 | 686-715 | Sentence | denotes | Parainfluenza 4 virus 11 NA |
T164 | 716-745 | Sentence | denotes | Human metapneumovirus 16 NA |
T165 | 746-763 | Sentence | denotes | Adenovirus 13 1 |
T166 | 764-786 | Sentence | denotes | Human bocavirus 6 NA |
T167 | 787-802 | Sentence | denotes | Legionella spp. |
T168 | 804-809 | Sentence | denotes | 3 NA |
T169 | 810-825 | Sentence | denotes | Mycoplasma spp. |
T170 | 827-832 | Sentence | denotes | 4 NA |
T171 | 833-865 | Sentence | denotes | Total clinical samples 297 NA |
T172 | 866-999 | Sentence | denotes | a For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value. |
T173 | 1000-1065 | Sentence | denotes | b Directly quantified or spiked in human negative-testing sputum. |
T174 | 1066-1131 | Sentence | denotes | c 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. |
T175 | 1132-1178 | Sentence | denotes | Isolated from human airway epithelial culture. |
T176 | 1179-1260 | Sentence | denotes | d 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. |
T177 | 1261-1342 | Sentence | denotes | The other isolate was not quantified but spiked in human negative-testing sputum. |
T178 | 1343-1408 | Sentence | denotes | e 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR. |
T179 | 1409-1489 | Sentence | denotes | f 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. |
T180 | 1490-1567 | Sentence | denotes | The other isolate was not quantified spiked in human negative-testing sputum. |
T181 | 1568-1633 | Sentence | denotes | g 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR. |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
309 | 259-268 | Species | denotes | HCoV-HKU1 | Tax:290028 |
310 | 277-286 | Species | denotes | HCoV-OC43 | Tax:31631 |
311 | 295-304 | Species | denotes | HCoV-NL63 | Tax:277944 |
312 | 313-322 | Species | denotes | HCoV-229E | Tax:11137 |
313 | 331-339 | Species | denotes | MERS-CoV | Tax:1335626 |
314 | 359-363 | Species | denotes | H1N1 | Tax:114727 |
315 | 389-393 | Species | denotes | H3N2 | Tax:119210 |
316 | 523-533 | Species | denotes | Rhinovirus | Tax:12059 |
317 | 554-584 | Species | denotes | Respiratory syncytial virus (A | Tax:1439707 |
318 | 716-737 | Species | denotes | Human metapneumovirus | Tax:162145 |
319 | 746-756 | Species | denotes | Adenovirus | Tax:10508 |
320 | 764-779 | Species | denotes | Human bocavirus | Tax:329641 |
321 | 469-473 | CellLine | denotes | H7N9 | CVCL:0452 |
325 | 160-164 | Gene | denotes | RdRp | Gene:43740578 |
326 | 131-153 | Species | denotes | 2019 novel coronavirus | Tax:2697049 |
327 | 24-35 | Species | denotes | respiratory | Tax:1439707 |
329 | 1035-1040 | Species | denotes | human | Tax:9606 |
332 | 1087-1089 | Gene | denotes | mL | Gene:21832 |
333 | 1146-1151 | Species | denotes | human | Tax:9606 |
336 | 1201-1203 | Gene | denotes | mL | Gene:21832 |
337 | 1312-1317 | Species | denotes | human | Tax:9606 |
339 | 1364-1366 | Gene | denotes | mL | Gene:21832 |
342 | 1430-1432 | Gene | denotes | mL | Gene:21832 |
343 | 1537-1542 | Species | denotes | human | Tax:9606 |
345 | 1589-1591 | Gene | denotes | mL | Gene:21832 |