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PMC:6988269 / 16989-18622 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T83 81-85 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T84 165-169 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T85 1058-1064 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T86 1076-1079 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T87 1190-1193 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T88 1335-1341 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T89 1353-1356 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T90 1419-1422 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T91 1560-1566 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T92 1578-1581 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 1058-1064 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T7 1335-1341 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T8 1560-1566 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T55 347-364 Disease denotes Influenza A(H1N1) http://purl.obolibrary.org/obo/MONDO_0005460
T56 377-386 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T57 402-411 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T58 433-442 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T59 457-466 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T60 481-490 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T61 787-797 Disease denotes Legionella http://purl.obolibrary.org/obo/MONDO_0005824

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T157 9-14 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Tests
T158 36-43 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T159 48-56 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T160 81-85 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T161 165-169 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T162 215-222 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T163 243-248 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T164 324-326 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T165 357-358 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T166 387-388 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T167 412-413 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T168 425-427 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T169 443-444 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T170 452-456 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T171 467-468 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T172 491-492 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T173 517-522 http://purl.obolibrary.org/obo/CLO_0001006 denotes 31 1
T174 576-581 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T175 583-584 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T176 585-586 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T177 612-617 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T178 642-647 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T179 649-651 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T180 672-677 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T181 702-707 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T182 709-711 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T183 716-721 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T184 764-769 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T185 866-867 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T186 894-901 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T187 916-921 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T188 1000-1001 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T189 1035-1040 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T190 1050-1057 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T191 1146-1151 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T192 1152-1158 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T193 1159-1169 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T194 1312-1317 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T195 1327-1334 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T196 1537-1542 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T197 1552-1559 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T53 430-432 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T54 551-553 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T55 593-595 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T56 623-625 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T57 653-655 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T58 683-685 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T59 713-715 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T60 743-745 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T61 784-786 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T62 807-809 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T63 830-832 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T64 863-865 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T145 0-186 Sentence denotes Table 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310)
T146 187-258 Sentence denotes Clinical samples with known viruses Clinical samplesa Virus isolatesb
T147 259-276 Sentence denotes HCoV-HKU1 14 1c
T148 277-294 Sentence denotes HCoV-OC43 16 2d
T149 295-312 Sentence denotes HCoV-NL63 14 1e
T150 313-330 Sentence denotes HCoV-229E 18 2f
T151 331-346 Sentence denotes MERS-CoV 5 1g
T152 347-376 Sentence denotes Influenza A(H1N1)pdm09 17 1
T153 377-401 Sentence denotes Influenza A(H3N2) 16 1
T154 402-432 Sentence denotes Influenza A (untyped) 11 NA
T155 433-456 Sentence denotes Influenza A(H5N1) 1 1
T156 457-480 Sentence denotes Influenza A(H7N9) 0 1
T157 481-522 Sentence denotes Influenza B (Victoria or Yamagata) 31 1
T158 523-553 Sentence denotes Rhinovirus/enterovirus 31 NA
T159 554-595 Sentence denotes Respiratory syncytial virus (A/B) 33 NA
T160 596-625 Sentence denotes Parainfluenza 1 virus 12 NA
T161 626-655 Sentence denotes Parainfluenza 2 virus 11 NA
T162 656-685 Sentence denotes Parainfluenza 3 virus 14 NA
T163 686-715 Sentence denotes Parainfluenza 4 virus 11 NA
T164 716-745 Sentence denotes Human metapneumovirus 16 NA
T165 746-763 Sentence denotes Adenovirus 13 1
T166 764-786 Sentence denotes Human bocavirus 6 NA
T167 787-802 Sentence denotes Legionella spp.
T168 804-809 Sentence denotes 3 NA
T169 810-825 Sentence denotes Mycoplasma spp.
T170 827-832 Sentence denotes 4 NA
T171 833-865 Sentence denotes Total clinical samples 297 NA
T172 866-999 Sentence denotes a For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.
T173 1000-1065 Sentence denotes b Directly quantified or spiked in human negative-testing sputum.
T174 1066-1131 Sentence denotes c 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR.
T175 1132-1178 Sentence denotes Isolated from human airway epithelial culture.
T176 1179-1260 Sentence denotes d 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate.
T177 1261-1342 Sentence denotes The other isolate was not quantified but spiked in human negative-testing sputum.
T178 1343-1408 Sentence denotes e 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.
T179 1409-1489 Sentence denotes f 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate.
T180 1490-1567 Sentence denotes The other isolate was not quantified spiked in human negative-testing sputum.
T181 1568-1633 Sentence denotes g 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
309 259-268 Species denotes HCoV-HKU1 Tax:290028
310 277-286 Species denotes HCoV-OC43 Tax:31631
311 295-304 Species denotes HCoV-NL63 Tax:277944
312 313-322 Species denotes HCoV-229E Tax:11137
313 331-339 Species denotes MERS-CoV Tax:1335626
314 359-363 Species denotes H1N1 Tax:114727
315 389-393 Species denotes H3N2 Tax:119210
316 523-533 Species denotes Rhinovirus Tax:12059
317 554-584 Species denotes Respiratory syncytial virus (A Tax:1439707
318 716-737 Species denotes Human metapneumovirus Tax:162145
319 746-756 Species denotes Adenovirus Tax:10508
320 764-779 Species denotes Human bocavirus Tax:329641
321 469-473 CellLine denotes H7N9 CVCL:0452
325 160-164 Gene denotes RdRp Gene:43740578
326 131-153 Species denotes 2019 novel coronavirus Tax:2697049
327 24-35 Species denotes respiratory Tax:1439707
329 1035-1040 Species denotes human Tax:9606
332 1087-1089 Gene denotes mL Gene:21832
333 1146-1151 Species denotes human Tax:9606
336 1201-1203 Gene denotes mL Gene:21832
337 1312-1317 Species denotes human Tax:9606
339 1364-1366 Gene denotes mL Gene:21832
342 1430-1432 Gene denotes mL Gene:21832
343 1537-1542 Species denotes human Tax:9606
345 1589-1591 Gene denotes mL Gene:21832