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LitCovid-PD-FMA-UBERON

LitCovid-PD-UBERON

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T5","span":{"begin":636,"end":642},"obj":"Body_part"},{"id":"T6","span":{"begin":1793,"end":1799},"obj":"Body_part"},{"id":"T7","span":{"begin":2070,"end":2076},"obj":"Body_part"},{"id":"T8","span":{"begin":2295,"end":2301},"obj":"Body_part"}],"attributes":[{"id":"A5","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A7","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A8","pred":"uberon_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"}],"text":"Cross-reactivity with other coronaviruses\nCell culture supernatants containing all endemic human coronaviruses (HCoV)‑229E, ‑NL63, ‑OC43 and ‑HKU1 as well as MERS-CoV were tested in duplicate in all three assays (Table 2). For the non-cultivable HCoV-HKU1, supernatant from human airway culture was used. Viral RNA concentration in all samples was determined by specific real-time RT-PCRs and in vitro-transcribed RNA standards designed for absolute quantification of viral load. Additional undiluted (but not quantified) cell culture supernatants were tested as summarised in Table 2. These were additionally mixed into negative human sputum samples. None of the tested viruses or virus preparations showed reactivity with any assay.\nTable 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310)\nClinical samples with known viruses Clinical samplesa Virus isolatesb\nHCoV-HKU1 14 1c\nHCoV-OC43 16 2d\nHCoV-NL63 14 1e\nHCoV-229E 18 2f\nMERS-CoV 5 1g\nInfluenza A(H1N1)pdm09 17 1\nInfluenza A(H3N2) 16 1\nInfluenza A (untyped) 11 NA\nInfluenza A(H5N1) 1 1\nInfluenza A(H7N9) 0 1\nInfluenza B (Victoria or Yamagata) 31 1\nRhinovirus/enterovirus 31 NA\nRespiratory syncytial virus (A/B) 33 NA\nParainfluenza 1 virus 12 NA\nParainfluenza 2 virus 11 NA\nParainfluenza 3 virus 14 NA\nParainfluenza 4 virus 11 NA\nHuman metapneumovirus 16 NA\nAdenovirus 13 1\nHuman bocavirus 6 NA\nLegionella spp. 3 NA\nMycoplasma spp. 4 NA\nTotal clinical samples 297 NA\na For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

LitCovid-PD-MONDO

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T55","span":{"begin":1082,"end":1099},"obj":"Disease"},{"id":"T56","span":{"begin":1112,"end":1121},"obj":"Disease"},{"id":"T57","span":{"begin":1137,"end":1146},"obj":"Disease"},{"id":"T58","span":{"begin":1168,"end":1177},"obj":"Disease"},{"id":"T59","span":{"begin":1192,"end":1201},"obj":"Disease"},{"id":"T60","span":{"begin":1216,"end":1225},"obj":"Disease"},{"id":"T61","span":{"begin":1522,"end":1532},"obj":"Disease"}],"attributes":[{"id":"A55","pred":"mondo_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/MONDO_0005460"},{"id":"A56","pred":"mondo_id","subj":"T56","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A57","pred":"mondo_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A58","pred":"mondo_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A59","pred":"mondo_id","subj":"T59","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A60","pred":"mondo_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A61","pred":"mondo_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/MONDO_0005824"}],"text":"Cross-reactivity with other coronaviruses\nCell culture supernatants containing all endemic human coronaviruses (HCoV)‑229E, ‑NL63, ‑OC43 and ‑HKU1 as well as MERS-CoV were tested in duplicate in all three assays (Table 2). For the non-cultivable HCoV-HKU1, supernatant from human airway culture was used. Viral RNA concentration in all samples was determined by specific real-time RT-PCRs and in vitro-transcribed RNA standards designed for absolute quantification of viral load. Additional undiluted (but not quantified) cell culture supernatants were tested as summarised in Table 2. These were additionally mixed into negative human sputum samples. None of the tested viruses or virus preparations showed reactivity with any assay.\nTable 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310)\nClinical samples with known viruses Clinical samplesa Virus isolatesb\nHCoV-HKU1 14 1c\nHCoV-OC43 16 2d\nHCoV-NL63 14 1e\nHCoV-229E 18 2f\nMERS-CoV 5 1g\nInfluenza A(H1N1)pdm09 17 1\nInfluenza A(H3N2) 16 1\nInfluenza A (untyped) 11 NA\nInfluenza A(H5N1) 1 1\nInfluenza A(H7N9) 0 1\nInfluenza B (Victoria or Yamagata) 31 1\nRhinovirus/enterovirus 31 NA\nRespiratory syncytial virus (A/B) 33 NA\nParainfluenza 1 virus 12 NA\nParainfluenza 2 virus 11 NA\nParainfluenza 3 virus 14 NA\nParainfluenza 4 virus 11 NA\nHuman metapneumovirus 16 NA\nAdenovirus 13 1\nHuman bocavirus 6 NA\nLegionella spp. 3 NA\nMycoplasma spp. 4 NA\nTotal clinical samples 297 NA\na For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.\nb Directly quantified or spiked in human negative-testing sputum.\nc 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR. Isolated from human airway epithelial culture.\nd 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified but spiked in human negative-testing sputum.\ne 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.\nf 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate. The other isolate was not quantified spiked in human negative-testing sputum.\ng 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR."}

LitCovid-PD-CLO

LitCovid-PD-CHEBI

LitCovid-sentences

LitCovid-PubTator