PMC:6988269 / 13622-14443
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T68 | 42-45 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T69 | 253-256 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T70 | 589-593 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T71 | 796-808 | Body_part | denotes | RNA molecule | http://purl.org/sig/ont/fma/fma84126 |
| T72 | 796-799 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T124 | 545-550 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T125 | 589-593 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T42 | 164-179 | Chemical | denotes | oligonucleotide | http://purl.obolibrary.org/obo/CHEBI_7754 |
| T43 | 800-808 | Chemical | denotes | molecule | http://purl.obolibrary.org/obo/CHEBI_25367 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T119 | 0-98 | Sentence | denotes | Sensitivity based on in vitro-transcribed RNA identical to 2019 novel coronavirus target sequences |
| T120 | 99-384 | Sentence | denotes | Although both assays detected 2019-nCoV without polymorphisms at oligonucleotide binding sites (Figure 2), we additionally generated in vitro-transcribed RNA standards that exactly matched the sequence of 2019-nCoV for absolute quantification and studying the limit of detection (LOD). |
| T121 | 385-511 | Sentence | denotes | Replicate reactions were done at concentrations around the detection end point determined in preliminary dilution experiments. |
| T122 | 512-665 | Sentence | denotes | The resulting LOD from replicate tests was 3.9 copies per reaction for the E gene assay and 3.6 copies per reaction for the RdRp assay (Figure 3C and D). |
| T123 | 666-821 | Sentence | denotes | These figures were close to the 95% hit rate of 2.9 copies per reaction, according to the Poisson distribution, expected when one RNA molecule is detected. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 233 | 59-81 | Species | denotes | 2019 novel coronavirus | Tax:2697049 |
| 238 | 636-640 | Gene | denotes | RdRp | Gene:43740578 |
| 239 | 129-138 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 240 | 304-313 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 241 | 164-179 | Chemical | denotes | oligonucleotide | MESH:D009841 |