PMC:6988269 / 10381-11185 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T40","span":{"begin":597,"end":608},"obj":"Body_part"},{"id":"T41","span":{"begin":648,"end":658},"obj":"Body_part"}],"attributes":[{"id":"A40","pred":"fma_id","subj":"T40","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A41","pred":"fma_id","subj":"T41","obj":"http://purl.org/sig/ont/fma/fma82740"}],"text":"Figure 2 Partial alignments of oligonucleotide binding regions, SARS-related coronaviruses (n = 9)\nThe panels show six available sequences of 2019-nCoV, aligned to the corresponding partial sequences of SARS-CoV strain Frankfurt 1, which can be used as a positive control for all three RT-PCR assays. The alignment also contains a closely related bat virus (Bat SARS-related CoV isolate bat-SL-CoVZC45, GenBank accession number MG772933) as well as the most distant member within the SARS-related bat CoV clade, detected in Bulgaria (GenBank accession number NC_014470). Dots represent identical nucleotides compared with the WH_Human_1 sequence. Nucleotide substitutions are specified. Blue arrows: oligonucleotides as specified in Table 1. More comprehensive alignments can be found in the Supplement."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T31","span":{"begin":65,"end":69},"obj":"Disease"},{"id":"T32","span":{"begin":204,"end":212},"obj":"Disease"},{"id":"T33","span":{"begin":204,"end":208},"obj":"Disease"},{"id":"T34","span":{"begin":363,"end":367},"obj":"Disease"},{"id":"T35","span":{"begin":485,"end":489},"obj":"Disease"}],"attributes":[{"id":"A31","pred":"mondo_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A35","pred":"mondo_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Figure 2 Partial alignments of oligonucleotide binding regions, SARS-related coronaviruses (n = 9)\nThe panels show six available sequences of 2019-nCoV, aligned to the corresponding partial sequences of SARS-CoV strain Frankfurt 1, which can be used as a positive control for all three RT-PCR assays. The alignment also contains a closely related bat virus (Bat SARS-related CoV isolate bat-SL-CoVZC45, GenBank accession number MG772933) as well as the most distant member within the SARS-related bat CoV clade, detected in Bulgaria (GenBank accession number NC_014470). Dots represent identical nucleotides compared with the WH_Human_1 sequence. Nucleotide substitutions are specified. Blue arrows: oligonucleotides as specified in Table 1. More comprehensive alignments can be found in the Supplement."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T91","span":{"begin":254,"end":255},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T92","span":{"begin":330,"end":331},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T93","span":{"begin":348,"end":351},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T94","span":{"begin":352,"end":357},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T95","span":{"begin":388,"end":391},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T96","span":{"begin":498,"end":501},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"}],"text":"Figure 2 Partial alignments of oligonucleotide binding regions, SARS-related coronaviruses (n = 9)\nThe panels show six available sequences of 2019-nCoV, aligned to the corresponding partial sequences of SARS-CoV strain Frankfurt 1, which can be used as a positive control for all three RT-PCR assays. The alignment also contains a closely related bat virus (Bat SARS-related CoV isolate bat-SL-CoVZC45, GenBank accession number MG772933) as well as the most distant member within the SARS-related bat CoV clade, detected in Bulgaria (GenBank accession number NC_014470). Dots represent identical nucleotides compared with the WH_Human_1 sequence. Nucleotide substitutions are specified. Blue arrows: oligonucleotides as specified in Table 1. More comprehensive alignments can be found in the Supplement."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T33","span":{"begin":32,"end":47},"obj":"Chemical"},{"id":"T34","span":{"begin":392,"end":394},"obj":"Chemical"},{"id":"T35","span":{"begin":597,"end":608},"obj":"Chemical"},{"id":"T36","span":{"begin":648,"end":658},"obj":"Chemical"},{"id":"T37","span":{"begin":701,"end":717},"obj":"Chemical"}],"attributes":[{"id":"A33","pred":"chebi_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/CHEBI_7754"},{"id":"A34","pred":"chebi_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A35","pred":"chebi_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"id":"A36","pred":"chebi_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"id":"A37","pred":"chebi_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/CHEBI_7754"}],"text":"Figure 2 Partial alignments of oligonucleotide binding regions, SARS-related coronaviruses (n = 9)\nThe panels show six available sequences of 2019-nCoV, aligned to the corresponding partial sequences of SARS-CoV strain Frankfurt 1, which can be used as a positive control for all three RT-PCR assays. The alignment also contains a closely related bat virus (Bat SARS-related CoV isolate bat-SL-CoVZC45, GenBank accession number MG772933) as well as the most distant member within the SARS-related bat CoV clade, detected in Bulgaria (GenBank accession number NC_014470). Dots represent identical nucleotides compared with the WH_Human_1 sequence. Nucleotide substitutions are specified. Blue arrows: oligonucleotides as specified in Table 1. More comprehensive alignments can be found in the Supplement."}

{"project":"LitCovid-sentences","denotations":[{"id":"T84","span":{"begin":0,"end":99},"obj":"Sentence"},{"id":"T85","span":{"begin":100,"end":301},"obj":"Sentence"},{"id":"T86","span":{"begin":302,"end":571},"obj":"Sentence"},{"id":"T87","span":{"begin":572,"end":647},"obj":"Sentence"},{"id":"T88","span":{"begin":648,"end":687},"obj":"Sentence"},{"id":"T89","span":{"begin":688,"end":742},"obj":"Sentence"},{"id":"T90","span":{"begin":743,"end":804},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Figure 2 Partial alignments of oligonucleotide binding regions, SARS-related coronaviruses (n = 9)\nThe panels show six available sequences of 2019-nCoV, aligned to the corresponding partial sequences of SARS-CoV strain Frankfurt 1, which can be used as a positive control for all three RT-PCR assays. The alignment also contains a closely related bat virus (Bat SARS-related CoV isolate bat-SL-CoVZC45, GenBank accession number MG772933) as well as the most distant member within the SARS-related bat CoV clade, detected in Bulgaria (GenBank accession number NC_014470). Dots represent identical nucleotides compared with the WH_Human_1 sequence. Nucleotide substitutions are specified. Blue arrows: oligonucleotides as specified in Table 1. More comprehensive alignments can be found in the Supplement."}

{"project":"LitCovid-PubTator","denotations":[{"id":"192","span":{"begin":65,"end":91},"obj":"Species"},{"id":"193","span":{"begin":32,"end":47},"obj":"Chemical"},{"id":"199","span":{"begin":143,"end":152},"obj":"Species"},{"id":"200","span":{"begin":204,"end":212},"obj":"Species"},{"id":"201","span":{"begin":363,"end":379},"obj":"Species"},{"id":"202","span":{"begin":502,"end":505},"obj":"Species"},{"id":"203","span":{"begin":701,"end":717},"obj":"Chemical"}],"attributes":[{"id":"A192","pred":"tao:has_database_id","subj":"192","obj":"Tax:694009"},{"id":"A193","pred":"tao:has_database_id","subj":"193","obj":"MESH:D009841"},{"id":"A199","pred":"tao:has_database_id","subj":"199","obj":"Tax:2697049"},{"id":"A200","pred":"tao:has_database_id","subj":"200","obj":"Tax:694009"},{"id":"A201","pred":"tao:has_database_id","subj":"201","obj":"Tax:694009"},{"id":"A202","pred":"tao:has_database_id","subj":"202","obj":"Tax:11118"},{"id":"A203","pred":"tao:has_database_id","subj":"203","obj":"MESH:D009841"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Figure 2 Partial alignments of oligonucleotide binding regions, SARS-related coronaviruses (n = 9)\nThe panels show six available sequences of 2019-nCoV, aligned to the corresponding partial sequences of SARS-CoV strain Frankfurt 1, which can be used as a positive control for all three RT-PCR assays. The alignment also contains a closely related bat virus (Bat SARS-related CoV isolate bat-SL-CoVZC45, GenBank accession number MG772933) as well as the most distant member within the SARS-related bat CoV clade, detected in Bulgaria (GenBank accession number NC_014470). Dots represent identical nucleotides compared with the WH_Human_1 sequence. Nucleotide substitutions are specified. Blue arrows: oligonucleotides as specified in Table 1. More comprehensive alignments can be found in the Supplement."}