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PMC:549712 / 541-1334 JSONTXT

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Id Subject Object Predicate Lexical cue
T355 0-8 NN denotes Ablation
T356 35-41 VBZ denotes causes
T357 9-11 IN denotes of
T358 12-17 NN denotes Ptdsr
T359 18-26 NN denotes function
T360 27-29 IN denotes in
T361 30-34 NNS denotes mice
T362 42-51 JJ denotes perinatal
T363 52-61 NN denotes lethality
T364 61-63 , denotes ,
T365 63-69 NN denotes growth
T366 70-81 NN denotes retardation
T367 82-85 CC denotes and
T368 86-87 DT denotes a
T369 88-93 NN denotes delay
T370 94-96 IN denotes in
T371 97-105 JJ denotes terminal
T372 106-121 NN denotes differentiation
T373 122-124 IN denotes of
T374 125-128 DT denotes the
T375 129-135 NN denotes kidney
T376 135-137 , denotes ,
T377 137-146 NN denotes intestine
T378 146-148 , denotes ,
T379 148-153 NN denotes liver
T380 154-157 CC denotes and
T381 158-163 NNS denotes lungs
T382 164-170 IN denotes during
T383 171-184 NN denotes embryogenesis
T384 184-185 . denotes .
T385 185-339 sentence denotes Moreover, eye development can be severely disturbed, ranging from defects in retinal differentiation to complete unilateral or bilateral absence of eyes.
T386 186-194 RB denotes Moreover
T387 228-237 VBN denotes disturbed
T388 194-196 , denotes ,
T389 196-199 NN denotes eye
T390 200-211 NN denotes development
T391 212-215 MD denotes can
T392 216-218 VB denotes be
T393 219-227 RB denotes severely
T394 237-239 , denotes ,
T395 239-246 VBG denotes ranging
T396 247-251 IN denotes from
T397 252-259 NNS denotes defects
T398 260-262 IN denotes in
T399 263-270 JJ denotes retinal
T400 271-286 NN denotes differentiation
T401 287-289 IN denotes to
T402 290-298 JJ denotes complete
T403 323-330 NN denotes absence
T404 299-309 JJ denotes unilateral
T405 310-312 CC denotes or
T406 313-322 JJ denotes bilateral
T407 331-333 IN denotes of
T408 334-338 NNS denotes eyes
T409 338-339 . denotes .
T410 339-469 sentence denotes Ptdsr -/- mice with anophthalmia develop novel lesions, with induction of ectopic retinal-pigmented epithelium in nasal cavities.
T411 340-345 NN denotes Ptdsr
T412 350-354 NNS denotes mice
T413 346-347 SYM denotes -
T414 347-348 HYPH denotes /
T415 348-349 SYM denotes -
T416 373-380 VBP denotes develop
T417 355-359 IN denotes with
T418 360-372 NN denotes anophthalmia
T419 381-386 JJ denotes novel
T420 387-394 NNS denotes lesions
T421 394-396 , denotes ,
T422 396-400 IN denotes with
T423 401-410 NN denotes induction
T424 411-413 IN denotes of
T425 414-421 JJ denotes ectopic
T426 440-450 NN denotes epithelium
T427 422-429 RB denotes retinal
T428 430-439 VBN denotes pigmented
T429 429-430 HYPH denotes -
T430 451-453 IN denotes in
T431 454-459 JJ denotes nasal
T432 460-468 NNS denotes cavities
T433 468-469 . denotes .
T434 469-793 sentence denotes A comprehensive investigation of apoptotic cell clearance in vivo and in vitro demonstrated that engulfment of apoptotic cells was normal in Ptdsr knockout mice, but Ptdsr-deficient macrophages were impaired in pro- and anti-inflammatory cytokine signaling after stimulation with apoptotic cells or with lipopolysaccharide.
T435 470-471 DT denotes A
T436 486-499 NN denotes investigation
T437 472-485 JJ denotes comprehensive
T438 549-561 VBD denotes demonstrated
T439 500-502 IN denotes of
T440 503-512 JJ denotes apoptotic
T441 518-527 NN denotes clearance
T442 513-517 NN denotes cell
T443 528-530 FW denotes in
T444 531-535 FW denotes vivo
T445 536-539 CC denotes and
T446 540-542 FW denotes in
T447 543-548 FW denotes vitro
T448 562-566 IN denotes that
T449 597-600 VBD denotes was
T450 567-577 NN denotes engulfment
T451 578-580 IN denotes of
T452 581-590 JJ denotes apoptotic
T453 591-596 NNS denotes cells
T454 601-607 JJ denotes normal
T455 608-610 IN denotes in
T456 611-616 NN denotes Ptdsr
T457 626-630 NNS denotes mice
T458 617-625 NN denotes knockout
T459 630-632 , denotes ,
T460 632-635 CC denotes but
T461 636-641 NN denotes Ptdsr
T462 642-651 JJ denotes deficient
T463 641-642 HYPH denotes -
T464 652-663 NNS denotes macrophages
T465 669-677 VBN denotes impaired
T466 664-668 VBD denotes were
T467 678-680 IN denotes in
T468 681-684 AFX denotes pro
T469 690-707 JJ denotes anti-inflammatory
T470 684-685 HYPH denotes -
T471 686-689 CC denotes and
T472 717-726 NN denotes signaling
T473 708-716 NN denotes cytokine
T474 727-732 IN denotes after
T475 733-744 NN denotes stimulation
T476 745-749 IN denotes with
T477 750-759 JJ denotes apoptotic
T478 760-765 NNS denotes cells
T479 766-768 CC denotes or
T480 769-773 IN denotes with
T481 774-792 NN denotes lipopolysaccharide
T482 792-793 . denotes .
R75 T355 T356 nsubj Ablation,causes
R76 T357 T355 prep of,Ablation
R77 T358 T359 compound Ptdsr,function
R78 T359 T357 pobj function,of
R79 T360 T355 prep in,Ablation
R80 T361 T360 pobj mice,in
R81 T362 T363 amod perinatal,lethality
R82 T363 T356 dobj lethality,causes
R83 T364 T363 punct ", ",lethality
R84 T365 T366 compound growth,retardation
R85 T366 T363 conj retardation,lethality
R86 T367 T366 cc and,retardation
R87 T368 T369 det a,delay
R88 T369 T366 conj delay,retardation
R89 T370 T369 prep in,delay
R90 T371 T372 amod terminal,differentiation
R91 T372 T370 pobj differentiation,in
R92 T373 T372 prep of,differentiation
R93 T374 T375 det the,kidney
R94 T375 T373 pobj kidney,of
R95 T376 T375 punct ", ",kidney
R96 T377 T375 conj intestine,kidney
R97 T378 T377 punct ", ",intestine
R98 T379 T377 conj liver,intestine
R99 T380 T379 cc and,liver
R100 T381 T379 conj lungs,liver
R101 T382 T369 prep during,delay
R102 T383 T382 pobj embryogenesis,during
R103 T384 T356 punct .,causes
R104 T386 T387 advmod Moreover,disturbed
R105 T388 T387 punct ", ",disturbed
R106 T389 T390 compound eye,development
R107 T390 T387 nsubjpass development,disturbed
R108 T391 T387 aux can,disturbed
R109 T392 T387 auxpass be,disturbed
R110 T393 T387 advmod severely,disturbed
R111 T394 T387 punct ", ",disturbed
R112 T395 T387 advcl ranging,disturbed
R113 T396 T395 prep from,ranging
R114 T397 T396 pobj defects,from
R115 T398 T397 prep in,defects
R116 T399 T400 amod retinal,differentiation
R117 T400 T398 pobj differentiation,in
R118 T401 T396 prep to,from
R119 T402 T403 amod complete,absence
R121 T404 T403 amod unilateral,absence
R122 T405 T404 cc or,unilateral
R123 T406 T404 conj bilateral,unilateral
R124 T407 T403 prep of,absence
R125 T408 T407 pobj eyes,of
R126 T409 T387 punct .,disturbed
R127 T411 T412 nmod Ptdsr,mice
R129 T413 T411 punct -,Ptdsr
R130 T414 T411 punct /,Ptdsr
R131 T415 T411 punct -,Ptdsr
R132 T417 T412 prep with,mice
R133 T418 T417 pobj anophthalmia,with
R134 T419 T420 amod novel,lesions
R135 T420 T416 dobj lesions,develop
R136 T421 T420 punct ", ",lesions
R137 T422 T420 prep with,lesions
R138 T423 T422 pobj induction,with
R139 T424 T423 prep of,induction
R140 T425 T426 amod ectopic,epithelium
R142 T427 T428 advmod retinal,pigmented
R143 T428 T426 amod pigmented,epithelium
R144 T429 T428 punct -,pigmented
R145 T430 T423 prep in,induction
R146 T431 T432 amod nasal,cavities
R147 T432 T430 pobj cavities,in
R148 T433 T416 punct .,develop
R149 T435 T436 det A,investigation
R150 T436 T438 nsubj investigation,demonstrated
R151 T437 T436 amod comprehensive,investigation
R152 T439 T436 prep of,investigation
R153 T440 T441 amod apoptotic,clearance
R154 T441 T439 pobj clearance,of
R155 T442 T441 compound cell,clearance
R156 T443 T444 advmod in,vivo
R157 T444 T436 advmod vivo,investigation
R158 T445 T444 cc and,vivo
R159 T446 T447 advmod in,vitro
R160 T447 T444 conj vitro,vivo
R161 T448 T449 mark that,was
R162 T449 T438 ccomp was,demonstrated
R163 T450 T449 nsubj engulfment,was
R164 T451 T450 prep of,engulfment
R165 T452 T453 amod apoptotic,cells
R166 T453 T451 pobj cells,of
R167 T454 T449 acomp normal,was
R168 T455 T449 prep in,was
R169 T456 T457 compound Ptdsr,mice
R170 T457 T455 pobj mice,in
R171 T458 T457 compound knockout,mice
R172 T459 T438 punct ", ",demonstrated
R173 T460 T438 cc but,demonstrated
R174 T461 T462 npadvmod Ptdsr,deficient
R175 T462 T464 amod deficient,macrophages
R176 T463 T462 punct -,deficient
R177 T464 T465 nsubjpass macrophages,impaired
R178 T465 T438 conj impaired,demonstrated
R179 T466 T465 auxpass were,impaired
R180 T467 T465 prep in,impaired
R181 T468 T469 advmod pro,anti-inflammatory
R182 T469 T472 amod anti-inflammatory,signaling
R183 T470 T469 punct -,anti-inflammatory
R184 T471 T469 cc and,anti-inflammatory
R185 T472 T467 pobj signaling,in
R186 T473 T472 compound cytokine,signaling
R187 T474 T465 prep after,impaired
R188 T475 T474 pobj stimulation,after
R189 T476 T475 prep with,stimulation
R190 T477 T478 amod apoptotic,cells
R191 T478 T476 pobj cells,with
R192 T479 T476 cc or,with
R193 T480 T476 conj with,with
R194 T481 T480 pobj lipopolysaccharide,with
R195 T482 T465 punct .,impaired
R120 T403 T401 pobj absence,to
R128 T412 T416 nsubj mice,develop
R141 T426 T424 pobj epithelium,of

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T202 12-17 PR_EXT:000009218 denotes Ptdsr
T203 30-34 NCBITaxon:10088 denotes mice
T204 42-51 UBERON:0012101 denotes perinatal
T205 46-51 GO:0007567 denotes natal
T206 52-61 GO_EXT:fatality_or_lethality denotes lethality
T207 63-69 GO_EXT:biological_growth_entity_or_process denotes growth
T208 106-121 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T209 129-135 UBERON:0002113 denotes kidney
T210 137-146 UBERON:0000160 denotes intestine
T211 148-153 UBERON:0002107 denotes liver
T212 158-163 UBERON:0002048 denotes lungs
T213 171-184 GO:0009790 denotes embryogenesis
T214 196-199 UBERON:0000970 denotes eye
T215 196-211 GO:0001654 denotes eye development
T216 263-270 UBERON:0000966 denotes retinal
T217 271-286 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T218 334-338 UBERON:0000970 denotes eyes
T219 340-345 PR_EXT:000009218 denotes Ptdsr
T220 346-347 SO_EXT:sequence_nullness_or_absence denotes -
T221 348-349 SO_EXT:sequence_nullness_or_absence denotes -
T222 350-354 NCBITaxon:10088 denotes mice
T223 422-450 UBERON:0001782 denotes retinal-pigmented epithelium
T224 430-439 CHEBI_EXT:26130 denotes pigmented
T225 454-468 UBERON:0001707 denotes nasal cavities
T226 503-517 CL:0000445 denotes apoptotic cell
T227 503-527 GO:0043277 denotes apoptotic cell clearance
T228 513-517 CL_GO_EXT:cell denotes cell
T229 567-596 GO:0043652 denotes engulfment of apoptotic cells
T230 581-596 CL:0000445 denotes apoptotic cells
T231 591-596 CL_GO_EXT:cell denotes cells
T232 611-616 PR_EXT:000009218 denotes Ptdsr
T233 626-630 NCBITaxon:10088 denotes mice
T234 636-641 PR_EXT:000009218 denotes Ptdsr
T235 652-663 CL:0000235 denotes macrophages
T236 695-707 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T237 708-716 GO_EXT:0005125 denotes cytokine
T238 708-726 GO:0019221 denotes cytokine signaling
T239 750-759 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T240 750-765 CL:0000445 denotes apoptotic cells
T241 760-765 CL_GO_EXT:cell denotes cells
T242 774-792 CHEBI:16412 denotes lipopolysaccharide

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T123 12-17 PR:000009218 denotes Ptdsr
T124 30-34 NCBITaxon:10088 denotes mice
T125 42-51 UBERON:0012101 denotes perinatal
T126 46-51 GO:0007567 denotes natal
T127 129-135 UBERON:0002113 denotes kidney
T128 137-146 UBERON:0000160 denotes intestine
T129 148-153 UBERON:0002107 denotes liver
T130 158-163 UBERON:0002048 denotes lungs
T131 171-184 GO:0009790 denotes embryogenesis
T132 196-199 UBERON:0000970 denotes eye
T133 196-211 GO:0001654 denotes eye development
T134 263-270 UBERON:0000966 denotes retinal
T135 334-338 UBERON:0000970 denotes eyes
T136 340-345 PR:000009218 denotes Ptdsr
T137 350-354 NCBITaxon:10088 denotes mice
T138 422-450 UBERON:0001782 denotes retinal-pigmented epithelium
T139 430-439 CHEBI:26130 denotes pigmented
T140 454-468 UBERON:0001707 denotes nasal cavities
T141 503-517 CL:0000445 denotes apoptotic cell
T142 503-527 GO:0043277 denotes apoptotic cell clearance
T143 567-596 GO:0043652 denotes engulfment of apoptotic cells
T144 581-596 CL:0000445 denotes apoptotic cells
T145 611-616 PR:000009218 denotes Ptdsr
T146 626-630 NCBITaxon:10088 denotes mice
T147 636-641 PR:000009218 denotes Ptdsr
T148 652-663 CL:0000235 denotes macrophages
T149 708-726 GO:0019221 denotes cytokine signaling
T150 750-765 CL:0000445 denotes apoptotic cells
T151 774-792 CHEBI:16412 denotes lipopolysaccharide