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PMC:549712 / 49124-49649 JSONTXT

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Id Subject Object Predicate Lexical cue
T14475 0-9 NN denotes Targeting
T14476 10-16 NN denotes vector
T14477 16-239 sentence denotes A Ptdsr-containing bacterial artificial chromosome (BAC) clone (GenBank accession number AC091694; RP-23-316F3) was isolated by sequence homology from a C57BL/6J genomic BAC library (RP-23; BACPAC Resources, Oakland, USA).
T14478 17-18 DT denotes A
T14479 74-79 NN denotes clone
T14480 19-24 NN denotes Ptdsr
T14481 25-35 VBG denotes containing
T14482 24-25 HYPH denotes -
T14483 36-45 JJ denotes bacterial
T14484 57-67 NN denotes chromosome
T14485 46-56 JJ denotes artificial
T14486 68-69 -LRB- denotes (
T14487 69-72 NN denotes BAC
T14488 72-73 -RRB- denotes )
T14489 133-141 VBN denotes isolated
T14490 80-81 -LRB- denotes (
T14491 116-118 NN denotes RP
T14492 81-88 NNP denotes GenBank
T14493 106-114 NN denotes AC091694
T14494 89-98 NN denotes accession
T14495 99-105 NN denotes number
T14496 114-115 : denotes ;
T14497 118-119 HYPH denotes -
T14498 119-121 CD denotes 23
T14499 121-122 HYPH denotes -
T14500 122-127 CD denotes 316F3
T14501 127-128 -RRB- denotes )
T14502 129-132 VBD denotes was
T14503 142-144 IN denotes by
T14504 145-153 NN denotes sequence
T14505 154-162 NN denotes homology
T14506 163-167 IN denotes from
T14507 168-169 DT denotes a
T14508 191-198 NN denotes library
T14509 170-175 NN denotes C57BL
T14510 176-178 NN denotes 6J
T14511 175-176 HYPH denotes /
T14512 179-186 JJ denotes genomic
T14513 187-190 NN denotes BAC
T14514 199-200 -LRB- denotes (
T14515 214-223 NNS denotes Resources
T14516 200-202 NN denotes RP
T14517 202-203 HYPH denotes -
T14518 203-205 CD denotes 23
T14519 205-206 : denotes ;
T14520 207-213 NN denotes BACPAC
T14521 223-225 , denotes ,
T14522 225-232 NNP denotes Oakland
T14523 232-234 , denotes ,
T14524 234-237 NNP denotes USA
T14525 237-238 -RRB- denotes )
T14526 238-239 . denotes .
T14527 239-525 sentence denotes A 14.5 kb KpnI/BamHI fragment containing the entire Ptdsr locus and 5' and 3' flanking regions was subcloned from this BAC clone and a 1.9 kb RsrII/AatII fragment containing exons I and II of the Ptdsr gene was replaced by a 1.2 kb loxP-flanked neomycin-resistance gene cassette (neo).
T14528 240-241 DT denotes A
T14529 261-269 NN denotes fragment
T14530 242-246 CD denotes 14.5
T14531 247-249 NN denotes kb
T14532 250-254 NN denotes KpnI
T14533 255-260 NN denotes BamHI
T14534 254-255 HYPH denotes /
T14535 339-348 VBN denotes subcloned
T14536 270-280 VBG denotes containing
T14537 281-284 DT denotes the
T14538 298-303 NN denotes locus
T14539 285-291 JJ denotes entire
T14540 292-297 NN denotes Ptdsr
T14541 304-307 CC denotes and
T14542 308-309 CD denotes 5
T14543 327-334 NNS denotes regions
T14544 309-310 SYM denotes '
T14545 311-314 CC denotes and
T14546 315-316 CD denotes 3
T14547 316-317 SYM denotes '
T14548 318-326 NN denotes flanking
T14549 335-338 VBD denotes was
T14550 349-353 IN denotes from
T14551 354-358 DT denotes this
T14552 363-368 NN denotes clone
T14553 359-362 NN denotes BAC
T14554 369-372 CC denotes and
T14555 373-374 DT denotes a
T14556 394-402 NN denotes fragment
T14557 375-378 CD denotes 1.9
T14558 379-381 NN denotes kb
T14559 382-387 NN denotes RsrII
T14560 388-393 NN denotes AatII
T14561 387-388 HYPH denotes /
T14562 451-459 VBN denotes replaced
T14563 403-413 VBG denotes containing
T14564 414-419 NNS denotes exons
T14565 420-421 CD denotes I
T14566 422-425 CC denotes and
T14567 426-428 CD denotes II
T14568 429-431 IN denotes of
T14569 432-435 DT denotes the
T14570 442-446 NN denotes gene
T14571 436-441 NN denotes Ptdsr
T14572 447-450 VBD denotes was
T14573 460-462 IN denotes by
T14574 463-464 DT denotes a
T14575 510-518 NN denotes cassette
T14576 465-468 CD denotes 1.2
T14577 469-471 NN denotes kb
T14578 472-476 NN denotes loxP
T14579 477-484 VBN denotes flanked
T14580 476-477 HYPH denotes -
T14581 485-493 NN denotes neomycin
T14582 494-504 NN denotes resistance
T14583 493-494 HYPH denotes -
T14584 505-509 NN denotes gene
T14585 519-520 -LRB- denotes (
T14586 520-523 NN denotes neo
T14587 523-524 -RRB- denotes )
T14588 524-525 . denotes .
R8632 T14475 T14476 compound Targeting,vector
R8633 T14478 T14479 det A,clone
R8634 T14479 T14489 nsubjpass clone,isolated
R8635 T14480 T14481 npadvmod Ptdsr,containing
R8636 T14481 T14479 amod containing,clone
R8637 T14482 T14481 punct -,containing
R8638 T14483 T14484 amod bacterial,chromosome
R8639 T14484 T14479 nmod chromosome,clone
R8640 T14485 T14484 amod artificial,chromosome
R8641 T14486 T14484 punct (,chromosome
R8642 T14487 T14484 appos BAC,chromosome
R8643 T14488 T14479 punct ),clone
R8644 T14490 T14491 punct (,RP
R8645 T14491 T14479 parataxis RP,clone
R8646 T14492 T14493 compound GenBank,AC091694
R8647 T14493 T14491 dep AC091694,RP
R8648 T14494 T14493 compound accession,AC091694
R8649 T14495 T14493 compound number,AC091694
R8650 T14496 T14491 punct ;,RP
R8651 T14497 T14491 punct -,RP
R8652 T14498 T14491 nummod 23,RP
R8653 T14499 T14491 punct -,RP
R8654 T14500 T14491 nummod 316F3,RP
R8655 T14501 T14491 punct ),RP
R8656 T14502 T14489 auxpass was,isolated
R8657 T14503 T14489 prep by,isolated
R8658 T14504 T14505 compound sequence,homology
R8659 T14505 T14503 pobj homology,by
R8660 T14506 T14505 prep from,homology
R8661 T14507 T14508 det a,library
R8662 T14508 T14506 pobj library,from
R8663 T14509 T14510 nmod C57BL,6J
R8664 T14510 T14508 nmod 6J,library
R8665 T14511 T14510 punct /,6J
R8666 T14512 T14508 amod genomic,library
R8667 T14513 T14508 compound BAC,library
R8668 T14514 T14515 punct (,Resources
R8669 T14515 T14508 parataxis Resources,library
R8670 T14516 T14515 dep RP,Resources
R8671 T14517 T14516 punct -,RP
R8672 T14518 T14516 nummod 23,RP
R8673 T14519 T14515 punct ;,Resources
R8674 T14520 T14515 compound BACPAC,Resources
R8675 T14521 T14515 punct ", ",Resources
R8676 T14522 T14515 npadvmod Oakland,Resources
R8677 T14523 T14515 punct ", ",Resources
R8678 T14524 T14515 npadvmod USA,Resources
R8679 T14525 T14515 punct ),Resources
R8680 T14526 T14489 punct .,isolated
R8681 T14528 T14529 det A,fragment
R8682 T14529 T14535 nsubjpass fragment,subcloned
R8683 T14530 T14531 nummod 14.5,kb
R8684 T14531 T14529 compound kb,fragment
R8685 T14532 T14533 compound KpnI,BamHI
R8686 T14533 T14529 compound BamHI,fragment
R8687 T14534 T14533 punct /,BamHI
R8688 T14536 T14529 acl containing,fragment
R8689 T14537 T14538 det the,locus
R8690 T14538 T14536 dobj locus,containing
R8691 T14539 T14538 amod entire,locus
R8692 T14540 T14538 compound Ptdsr,locus
R8693 T14541 T14538 cc and,locus
R8694 T14542 T14543 nummod 5,regions
R8695 T14543 T14538 conj regions,locus
R8696 T14544 T14542 punct ',5
R8697 T14545 T14542 cc and,5
R8698 T14546 T14542 conj 3,5
R8699 T14547 T14546 punct ',3
R8700 T14548 T14543 compound flanking,regions
R8701 T14549 T14535 auxpass was,subcloned
R8702 T14550 T14535 prep from,subcloned
R8703 T14551 T14552 det this,clone
R8704 T14552 T14550 pobj clone,from
R8705 T14553 T14552 compound BAC,clone
R8706 T14554 T14535 cc and,subcloned
R8707 T14555 T14556 det a,fragment
R8708 T14556 T14562 nsubjpass fragment,replaced
R8709 T14557 T14558 nummod 1.9,kb
R8710 T14558 T14556 compound kb,fragment
R8711 T14559 T14560 compound RsrII,AatII
R8712 T14560 T14556 compound AatII,fragment
R8713 T14561 T14560 punct /,AatII
R8714 T14562 T14535 conj replaced,subcloned
R8715 T14563 T14556 acl containing,fragment
R8716 T14564 T14565 nmod exons,I
R8717 T14565 T14563 dobj I,containing
R8718 T14566 T14565 cc and,I
R8719 T14567 T14565 conj II,I
R8720 T14568 T14565 prep of,I
R8721 T14569 T14570 det the,gene
R8722 T14570 T14568 pobj gene,of
R8723 T14571 T14570 compound Ptdsr,gene
R8724 T14572 T14562 auxpass was,replaced
R8725 T14573 T14562 prep by,replaced
R8726 T14574 T14575 det a,cassette
R8727 T14575 T14573 pobj cassette,by
R8728 T14576 T14577 nummod 1.2,kb
R8729 T14577 T14575 nmod kb,cassette
R8730 T14578 T14579 npadvmod loxP,flanked
R8731 T14579 T14575 amod flanked,cassette
R8732 T14580 T14579 punct -,flanked
R8733 T14581 T14582 compound neomycin,resistance
R8734 T14582 T14575 compound resistance,cassette
R8735 T14583 T14582 punct -,resistance
R8736 T14584 T14575 compound gene,cassette
R8737 T14585 T14586 punct (,neo
R8738 T14586 T14575 parataxis neo,cassette
R8739 T14587 T14586 punct ),neo
R8740 T14588 T14562 punct .,replaced

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T14366 0-16 SO_EXT:0001644 denotes Targeting vector
T14367 19-24 PR_EXT:000009218 denotes Ptdsr
T14368 36-45 NCBITaxon:2 denotes bacterial
T14369 36-67 SO_EXT:0000153 denotes bacterial artificial chromosome
T14370 57-67 GO_SO_EXT:chromosome denotes chromosome
T14371 69-72 SO_EXT:0000153 denotes BAC
T14372 74-79 SO_EXT:sequence_cloned_entity denotes clone
T14373 145-153 SO_EXT:biological_sequence denotes sequence
T14374 179-186 SO_EXT:0001026 denotes genomic
T14375 187-190 SO_EXT:0000153 denotes BAC
T14376 248-249 CHEBI_SO_EXT:base denotes b
T14377 255-260 PR_EXT:P23940 denotes BamHI
T14378 292-297 PR_EXT:000009218 denotes Ptdsr
T14379 308-310 _FRAGMENT denotes 5'
T14380 318-334 SO_EXT:0001416 denotes flanking regions
T14381 315-334 SO_EXT:0001417 denotes 3' flanking regions
T14382 359-362 SO_EXT:0000153 denotes BAC
T14383 363-368 SO_EXT:sequence_cloned_entity denotes clone
T14384 380-381 CHEBI_SO_EXT:base denotes b
T14385 414-419 SO_EXT:0000147 denotes exons
T14386 436-441 PR_EXT:000009218 denotes Ptdsr
T14387 442-446 SO_EXT:0000704 denotes gene
T14388 451-459 SO_EXT:sequence_substitution_process denotes replaced
T14389 470-471 CHEBI_SO_EXT:base denotes b
T14390 472-484 SO:0000359 denotes loxP-flanked
T14391 485-493 CHEBI:7507 denotes neomycin
T14392 505-518 SO_EXT:0005853 denotes gene cassette
T14393 520-523 CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase denotes neo
R8616 T14380 T14379 _lexicallyChainedTo flanking regions,5'

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T14307 0-16 SO:0001644 denotes Targeting vector
T14308 19-24 PR:000009218 denotes Ptdsr
T14309 36-45 NCBITaxon:2 denotes bacterial
T14310 36-67 SO:0000153 denotes bacterial artificial chromosome
T14311 69-72 SO:0000153 denotes BAC
T14312 179-186 SO:0001026 denotes genomic
T14313 187-190 SO:0000153 denotes BAC
T14314 255-260 PR:P23940 denotes BamHI
T14315 292-297 PR:000009218 denotes Ptdsr
T14316 308-310 _FRAGMENT denotes 5'
T14317 318-334 SO:0001416 denotes flanking regions
T14318 315-334 SO:0001417 denotes 3' flanking regions
T14319 359-362 SO:0000153 denotes BAC
T14320 414-419 SO:0000147 denotes exons
T14321 436-441 PR:000009218 denotes Ptdsr
T14322 442-446 SO:0000704 denotes gene
T14323 472-484 SO:0000359 denotes loxP-flanked
T14324 485-493 CHEBI:7507 denotes neomycin
T14325 505-518 SO:0005853 denotes gene cassette
R8615 T14317 T14316 _lexicallyChainedTo flanking regions,5'