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PMC:539297 / 445-1018 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T71 11-15 PR:000005591 denotes Cln3
T72 31-35 NCBITaxon:10088 denotes mice
T73 79-86 GO:0010467 denotes express
T74 94-102 PR:000005591 denotes battenin
T75 206-220 CL:0000540 denotes neuronal cells
T76 242-247 NCBITaxon:10088 denotes mouse
T77 248-257 UBERON:0002037 denotes cerebella
T78 298-300 UBERON:0002037 denotes Cb
T79 300-304 PR:000005591 denotes Cln3
T80 345-353 CL:0000540 denotes neuronal
T81 409-414 PR:000010124 denotes MAP-2
T82 419-423 PR:000006252 denotes NeuN
T83 434-440 CL:0000540 denotes neuron
T84 464-466 UBERON:0002037 denotes Cb
T85 466-470 PR:000005591 denotes Cln3
T86 493-500 GO:0010467 denotes express
T87 522-530 PR:000005591 denotes battenin

craft-sa-dev

Id Subject Object Predicate Lexical cue
T244 1-10 VBD denotes generated
T246 11-19 NN denotes Cln3Δex7
T247 31-35 NNS denotes mice
T248 19-20 HYPH denotes /
T249 20-21 CD denotes 8
T250 22-27 VB denotes knock
T251 27-28 HYPH denotes -
T252 28-30 RP denotes in
T253 35-37 , denotes ,
T254 37-42 WDT denotes which
T255 43-52 VBP denotes replicate
T256 53-56 DT denotes the
T257 69-77 NN denotes mutation
T258 57-63 JJ denotes common
T259 64-68 NN denotes JNCL
T260 77-79 , denotes ,
T261 79-86 VBP denotes express
T262 87-93 NN denotes mutant
T263 94-102 NN denotes battenin
T264 103-106 CC denotes and
T265 107-114 VBP denotes display
T266 115-119 NN denotes JNCL
T267 120-124 JJ denotes like
T268 119-120 HYPH denotes -
T269 125-134 NN denotes pathology
T270 134-135 . denotes .
T271 135-144 sentence denotes Results
T272 137-144 NNS denotes Results
T273 144-452 sentence denotes To elucidate the consequences of the common JNCL mutation in neuronal cells, we used P4 knock-in mouse cerebella to establish conditionally immortalized CbCln3 wild-type, heterozygous, and homozygous neuronal precursor cell lines, which can be differentiated into MAP-2 and NeuN-positive, neuron-like cells.
T274 145-147 TO denotes To
T275 148-157 VB denotes elucidate
T276 225-229 VBD denotes used
T277 158-161 DT denotes the
T278 162-174 NNS denotes consequences
T279 175-177 IN denotes of
T280 178-181 DT denotes the
T281 194-202 NN denotes mutation
T282 182-188 JJ denotes common
T283 189-193 NN denotes JNCL
T284 203-205 IN denotes in
T285 206-214 JJ denotes neuronal
T286 215-220 NNS denotes cells
T287 220-222 , denotes ,
T288 222-224 PRP denotes we
T289 230-232 NN denotes P4
T290 248-257 NNS denotes cerebella
T291 233-238 VB denotes knock
T292 238-239 HYPH denotes -
T293 239-241 RP denotes in
T294 242-247 NN denotes mouse
T295 258-260 TO denotes to
T296 261-270 VB denotes establish
T297 271-284 RB denotes conditionally
T298 285-297 VBN denotes immortalized
T299 369-374 NNS denotes lines
T300 298-304 NN denotes CbCln3
T301 305-309 JJ denotes wild
T302 310-314 NN denotes type
T303 309-310 HYPH denotes -
T304 314-316 , denotes ,
T305 316-328 JJ denotes heterozygous
T306 328-330 , denotes ,
T307 330-333 CC denotes and
T308 334-344 JJ denotes homozygous
T309 345-353 JJ denotes neuronal
T310 354-363 NN denotes precursor
T311 364-368 NN denotes cell
T312 374-376 , denotes ,
T313 376-381 WDT denotes which
T314 389-403 VBN denotes differentiated
T315 382-385 MD denotes can
T316 386-388 VB denotes be
T317 404-408 IN denotes into
T318 409-412 NN denotes MAP
T319 424-432 JJ denotes positive
T320 412-413 HYPH denotes -
T321 413-414 CD denotes 2
T322 415-418 CC denotes and
T323 419-423 NN denotes NeuN
T324 423-424 HYPH denotes -
T325 446-451 NNS denotes cells
T326 432-434 , denotes ,
T327 434-440 NN denotes neuron
T328 441-445 JJ denotes like
T329 440-441 HYPH denotes -
T330 451-452 . denotes .
T332 453-463 JJ denotes Homozygous
T333 487-492 NNS denotes cells
T334 464-474 NN denotes CbCln3Δex7
T335 474-475 HYPH denotes /
T336 475-476 CD denotes 8
T337 477-486 NN denotes precursor
T338 493-500 VBP denotes express
T339 501-504 JJ denotes low
T340 505-511 NNS denotes levels
T341 512-514 IN denotes of
T342 515-521 NN denotes mutant
T343 522-530 NN denotes battenin
T344 531-534 CC denotes and
T345 534-536 , denotes ,
T346 536-540 WRB denotes when
T347 541-545 VBN denotes aged
T348 561-571 VBP denotes accumulate
T349 546-548 IN denotes at
T350 549-559 NN denotes confluency
T351 559-561 , denotes ,
R85 T264 T261 cc and,express
R86 T265 T261 conj display,express
R84 T263 T261 dobj battenin,express
R67 T246 T247 nmod Cln3Δex7,mice
R68 T247 T244 dobj mice,generated
R69 T248 T246 punct /,Cln3Δex7
R70 T249 T246 nummod 8,Cln3Δex7
R71 T250 T247 amod knock,mice
R72 T251 T250 punct -,knock
R73 T252 T250 prt in,knock
R74 T253 T247 punct ", ",mice
R75 T254 T255 dep which,replicate
R76 T255 T247 relcl replicate,mice
R77 T256 T257 det the,mutation
R78 T257 T255 dobj mutation,replicate
R79 T258 T257 amod common,mutation
R80 T259 T257 compound JNCL,mutation
R81 T260 T255 punct ", ",replicate
R82 T261 T255 conj express,replicate
R83 T262 T263 compound mutant,battenin
R87 T266 T267 npadvmod JNCL,like
R89 T268 T267 punct -,like
R90 T269 T265 dobj pathology,display
R91 T270 T244 punct .,generated
R92 T274 T275 aux To,elucidate
R93 T275 T276 advcl elucidate,used
R94 T277 T278 det the,consequences
R95 T278 T275 dobj consequences,elucidate
R96 T279 T278 prep of,consequences
R97 T280 T281 det the,mutation
R98 T281 T279 pobj mutation,of
R99 T282 T281 amod common,mutation
R100 T283 T281 compound JNCL,mutation
R101 T284 T278 prep in,consequences
R102 T285 T286 amod neuronal,cells
R103 T286 T284 pobj cells,in
R104 T287 T276 punct ", ",used
R105 T288 T276 nsubj we,used
R106 T289 T290 nmod P4,cerebella
R107 T290 T276 dobj cerebella,used
R108 T291 T290 amod knock,cerebella
R109 T292 T291 punct -,knock
R110 T293 T291 prt in,knock
R111 T294 T290 compound mouse,cerebella
R112 T295 T296 aux to,establish
R113 T296 T276 advcl establish,used
R114 T297 T298 advmod conditionally,immortalized
R115 T298 T299 amod immortalized,lines
R116 T299 T296 dobj lines,establish
R117 T300 T299 nmod CbCln3,lines
R118 T301 T302 amod wild,type
R119 T302 T299 nmod type,lines
R120 T303 T302 punct -,type
R121 T304 T302 punct ", ",type
R122 T305 T302 conj heterozygous,type
R123 T306 T305 punct ", ",heterozygous
R124 T307 T305 cc and,heterozygous
R125 T308 T305 conj homozygous,heterozygous
R126 T309 T310 amod neuronal,precursor
R127 T310 T299 compound precursor,lines
R128 T311 T299 compound cell,lines
R129 T312 T299 punct ", ",lines
R130 T313 T314 dep which,differentiated
R131 T314 T299 relcl differentiated,lines
R132 T315 T314 aux can,differentiated
R133 T316 T314 auxpass be,differentiated
R134 T317 T314 prep into,differentiated
R135 T318 T319 npadvmod MAP,positive
R136 T319 T325 amod positive,cells
R137 T320 T318 punct -,MAP
R138 T321 T318 nummod 2,MAP
R139 T322 T318 cc and,MAP
R140 T323 T318 conj NeuN,MAP
R141 T324 T319 punct -,positive
R142 T325 T317 pobj cells,into
R143 T326 T325 punct ", ",cells
R144 T327 T328 npadvmod neuron,like
R145 T328 T325 amod like,cells
R146 T329 T328 punct -,like
R147 T330 T276 punct .,used
R148 T332 T333 amod Homozygous,cells
R149 T333 T338 nsubj cells,express
R150 T334 T333 nmod CbCln3Δex7,cells
R151 T335 T334 punct /,CbCln3Δex7
R152 T336 T334 nummod 8,CbCln3Δex7
R153 T337 T333 compound precursor,cells
R154 T339 T340 amod low,levels
R155 T340 T338 dobj levels,express
R156 T341 T340 prep of,levels
R157 T342 T343 compound mutant,battenin
R158 T343 T341 pobj battenin,of
R159 T344 T338 cc and,express
R160 T345 T338 punct ", ",express
R161 T346 T347 advmod when,aged
R162 T347 T348 advcl aged,accumulate
R163 T348 T338 conj accumulate,express
R164 T349 T347 prep at,aged
R165 T350 T349 pobj confluency,at
R166 T351 T348 punct ", ",accumulate
R88 T267 T269 amod like,pathology

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T120 11-15 PR_EXT:000005591 denotes Cln3
T121 31-35 NCBITaxon:10088 denotes mice
T122 69-77 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T123 79-86 GO:0010467 denotes express
T124 87-93 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T125 94-102 PR_EXT:000005591 denotes battenin
T126 194-202 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T127 206-220 CL:0000540 denotes neuronal cells
T128 215-220 CL_GO_EXT:cell denotes cells
T129 242-247 NCBITaxon:10088 denotes mouse
T130 248-257 UBERON:0002037 denotes cerebella
T131 298-300 UBERON:0002037 denotes Cb
T132 300-304 PR_EXT:000005591 denotes Cln3
T133 305-314 SO_EXT:wild_type_entity_or_quality denotes wild-type
T134 345-353 CL:0000540 denotes neuronal
T135 364-368 CL_GO_EXT:cell denotes cell
T136 389-403 GO_PATO_RO_EXT:developmental_differentiation_process_or_quality denotes differentiated
T137 409-414 PR_EXT:000010124 denotes MAP-2
T138 419-423 PR_EXT:000006252 denotes NeuN
T139 434-440 CL:0000540 denotes neuron
T140 446-451 CL_GO_EXT:cell denotes cells
T141 464-466 UBERON:0002037 denotes Cb
T142 466-470 PR_EXT:000005591 denotes Cln3
T143 487-492 CL_GO_EXT:cell denotes cells
T144 493-500 GO:0010467 denotes express
T145 515-521 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T146 522-530 PR_EXT:000005591 denotes battenin
T147 541-545 GO_PATO_EXT:aging_or_agedness denotes aged