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PMC:539297 / 17823-18418 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3152 0-1 UBERON:0002037 denotes C
T3153 1-2 GO:0005764 denotes o
T3154 9-10 GO:0042571 denotes t
T3155 25-26 GO:0005634 denotes e
T3156 31-32 GO:0005634 denotes l
T3157 51-55 PR:000006901 denotes EEA1
T3158 101-124 GO:0006907 denotes fluid-phase endocytosis
T3159 156-158 UBERON:0002037 denotes Cb
T3160 158-162 PR:000005591 denotes Cln3
T3161 191-198 CHEBI:52071 denotes dextran
T3162 199-203 CHEBI:37926 denotes FITC
T3163 274-281 CHEBI:52071 denotes dextran
T3164 282-286 CHEBI:37926 denotes FITC
T3165 355-364 GO:0006897 denotes endocytic
T3166 355-373 GO:0030139 denotes endocytic vesicles
T3167 405-412 GO:0005634 denotes nuclear
T3168 441-443 UBERON:0002037 denotes Cb
T3169 443-447 PR:000005591 denotes Cln3
T3170 497-504 CHEBI:52071 denotes dextran
T3171 505-509 CHEBI:37926 denotes FITC
T3172 539-547 GO:0031982 denotes vesicles
T3173 573-582 GO:0005737 denotes cytoplasm

craft-sa-dev

Id Subject Object Predicate Lexical cue
T3629 0-12 sentence denotes Consistent w
T3695 176-178 IN denotes as
T3696 179-187 VBN denotes measured
T3697 188-190 IN denotes by
T3698 191-198 NN denotes dextran
T3699 199-203 NN denotes FITC
T3700 198-199 HYPH denotes -
T3701 204-210 NN denotes uptake
T3702 211-212 -LRB- denotes (
T3703 212-216 NN denotes Fig.
T3704 217-218 CD denotes 7
T3705 218-219 -RRB- denotes )
T3706 219-220 . denotes .
T3707 220-420 sentence denotes Following a 15-minute incubation in media containing dextran-FITC, wild-type and heterozygote cells displayed brightly stained, large endocytic vesicles that were clustered in the perinuclear region.
T3708 221-230 VBG denotes Following
T3709 321-330 VBD denotes displayed
T3710 231-232 DT denotes a
T3711 243-253 NN denotes incubation
T3712 233-235 CD denotes 15
T3713 236-242 NN denotes minute
T3749 451-452 HYPH denotes /
T3750 452-453 CD denotes 8
T3751 460-464 VBD denotes were
T3752 465-469 RBR denotes less
T3753 470-478 RB denotes brightly
T3754 487-491 IN denotes with
T3755 492-496 JJS denotes most
T3756 510-516 NN denotes signal
T3757 497-504 NN denotes dextran
T3758 505-509 NN denotes FITC
T3759 504-505 HYPH denotes -
T3760 517-527 VBG denotes localizing
T3761 528-530 IN denotes to
T3762 531-538 JJR denotes smaller
T3763 539-547 NNS denotes vesicles
T3764 548-557 VBN denotes scattered
T3765 558-568 IN denotes throughout
T3766 569-572 DT denotes the
T3767 573-582 NN denotes cytoplasm
T3768 583-585 IN denotes of
T3769 586-589 DT denotes the
T3770 590-594 NN denotes cell
T3771 594-595 . denotes .
T3675 73-75 IN denotes by
T3630 11-12 VBN denotes w
T3631 1-2 NNS denotes o
T3632 0-1 NN denotes C
T3633 2-3 NN denotes n
T3634 3-4 JJ denotes s
T3635 4-5 IN denotes i
T3636 5-8 NN denotes ste
T3637 9-10 NN denotes t
T3638 8-9 CC denotes n
T3639 12-17 sentence denotes ith t
T3640 12-13 JJ denotes i
T3641 13-14 VBN denotes t
T3642 14-15 DT denotes h
T3643 16-17 NN denotes t
T3644 17-26 sentence denotes he altere
T3645 17-18 JJ denotes h
T3646 18-19 NNS denotes e
T3647 20-22 JJR denotes al
T3648 22-23 JJ denotes t
T3649 23-26 JJ denotes ere
T3650 26-38 sentence denotes d early endo
T3651 26-27 VBD denotes d
T3652 28-29 VBN denotes e
T3653 29-30 NN denotes a
T3654 30-32 JJ denotes rl
T3655 32-33 JJ denotes y
T3656 34-35 NN denotes e
T3657 35-36 IN denotes n
T3658 36-37 VBN denotes d
T3659 37-38 NN denotes o
T3660 38-43 sentence denotes some
T3661 40-42 NNS denotes me
T3662 38-39 JJ denotes s
T3663 39-40 JJ denotes o
T3664 43-45 sentence denotes ma
T3665 43-45 NN denotes ma
T3666 45-220 sentence denotes rker (EEA1) signal observed by immunostaining (Fig. 3), fluid-phase endocytosis was also altered in homozygous CbCln3Δex7/8 cells, as measured by dextran-FITC uptake (Fig. 7).
T3667 134-141 VBN denotes altered
T3668 57-63 NN denotes signal
T3669 45-46 JJ denotes r
T3670 46-49 NN denotes ker
T3671 50-51 -LRB- denotes (
T3672 51-55 NN denotes EEA1
T3673 55-56 -RRB- denotes )
T3674 64-72 VBN denotes observed
T3676 76-90 NN denotes immunostaining
T3677 91-92 -LRB- denotes (
T3678 92-96 NN denotes Fig.
T3679 97-98 CD denotes 3
T3680 98-99 -RRB- denotes )
T3681 99-101 , denotes ,
T3682 101-106 NN denotes fluid
T3683 107-112 NN denotes phase
T3684 106-107 HYPH denotes -
T3685 113-124 NN denotes endocytosis
T3686 125-128 VBD denotes was
T3687 129-133 RB denotes also
T3688 142-144 IN denotes in
T3689 145-155 JJ denotes homozygous
T3690 169-174 NNS denotes cells
T3691 156-166 NN denotes CbCln3Δex7
T3692 166-167 HYPH denotes /
T3693 167-168 CD denotes 8
T3694 174-176 , denotes ,
T3714 235-236 HYPH denotes -
T3715 254-256 IN denotes in
T3716 257-262 NNS denotes media
T3717 263-273 VBG denotes containing
T3718 274-281 NN denotes dextran
T3719 282-286 NN denotes FITC
T3720 281-282 HYPH denotes -
T3721 286-288 , denotes ,
T3722 288-292 JJ denotes wild
T3723 293-297 NN denotes type
T3724 292-293 HYPH denotes -
T3725 315-320 NNS denotes cells
T3726 298-301 CC denotes and
T3727 302-314 NN denotes heterozygote
T3728 331-339 RB denotes brightly
T3729 340-347 VBN denotes stained
T3730 365-373 NNS denotes vesicles
T3731 347-349 , denotes ,
T3732 349-354 JJ denotes large
T3733 355-364 JJ denotes endocytic
T3734 374-378 WDT denotes that
T3735 384-393 VBN denotes clustered
T3736 379-383 VBD denotes were
T3737 394-396 IN denotes in
T3738 397-400 DT denotes the
T3739 413-419 NN denotes region
T3740 401-412 JJ denotes perinuclear
T3741 419-420 . denotes .
T3742 420-595 sentence denotes However, homozygous CbCln3Δex7/8 cells were less brightly stained with most dextran-FITC signal localizing to smaller vesicles scattered throughout the cytoplasm of the cell.
T3743 421-428 RB denotes However
T3744 479-486 VBN denotes stained
T3745 428-430 , denotes ,
T3746 430-440 JJ denotes homozygous
T3747 454-459 NNS denotes cells
T3748 441-451 NN denotes CbCln3Δex7
R2079 T3683 T3685 compound phase,endocytosis
R2080 T3684 T3683 punct -,phase
R2081 T3685 T3667 nsubjpass endocytosis,altered
R2082 T3686 T3667 auxpass was,altered
R2083 T3687 T3667 advmod also,altered
R2084 T3688 T3667 prep in,altered
R2085 T3689 T3690 amod homozygous,cells
R2086 T3690 T3688 pobj cells,in
R2087 T3691 T3690 nmod CbCln3Δex7,cells
R2088 T3692 T3691 punct /,CbCln3Δex7
R2089 T3693 T3691 nummod 8,CbCln3Δex7
R2090 T3694 T3667 punct ", ",altered
R2091 T3695 T3696 mark as,measured
R2092 T3696 T3667 advcl measured,altered
R2093 T3697 T3696 agent by,measured
R2094 T3698 T3699 compound dextran,FITC
R2095 T3699 T3701 compound FITC,uptake
R2096 T3700 T3699 punct -,FITC
R2097 T3701 T3697 pobj uptake,by
R2098 T3702 T3703 punct (,Fig.
R2099 T3703 T3667 parataxis Fig.,altered
R2100 T3704 T3703 nummod 7,Fig.
R2101 T3705 T3703 punct ),Fig.
R2102 T3706 T3667 punct .,altered
R2103 T3708 T3709 prep Following,displayed
R2104 T3710 T3711 det a,incubation
R2105 T3711 T3708 pobj incubation,Following
R2106 T3712 T3713 nummod 15,minute
R2107 T3713 T3711 compound minute,incubation
R2108 T3714 T3713 punct -,minute
R2109 T3715 T3711 prep in,incubation
R2110 T3716 T3715 pobj media,in
R2111 T3717 T3716 acl containing,media
R2112 T3718 T3719 compound dextran,FITC
R2113 T3719 T3717 dobj FITC,containing
R2114 T3720 T3719 punct -,FITC
R2115 T3721 T3709 punct ", ",displayed
R2116 T3722 T3723 amod wild,type
R2117 T3723 T3725 nmod type,cells
R2118 T3724 T3723 punct -,type
R2119 T3725 T3709 nsubj cells,displayed
R2120 T3726 T3723 cc and,type
R2121 T3727 T3723 conj heterozygote,type
R2122 T3728 T3729 advmod brightly,stained
R2123 T3729 T3730 amod stained,vesicles
R2124 T3730 T3709 dobj vesicles,displayed
R2125 T3731 T3730 punct ", ",vesicles
R2126 T3732 T3730 amod large,vesicles
R2127 T3733 T3730 amod endocytic,vesicles
R2128 T3734 T3735 dep that,clustered
R2129 T3735 T3730 relcl clustered,vesicles
R2130 T3736 T3735 auxpass were,clustered
R2131 T3737 T3735 prep in,clustered
R2132 T3738 T3739 det the,region
R2133 T3739 T3737 pobj region,in
R2134 T3740 T3739 amod perinuclear,region
R2135 T3741 T3709 punct .,displayed
R2136 T3743 T3744 advmod However,stained
R2137 T3745 T3744 punct ", ",stained
R2138 T3746 T3747 amod homozygous,cells
R2139 T3747 T3744 nsubjpass cells,stained
R2140 T3748 T3747 nmod CbCln3Δex7,cells
R2141 T3749 T3748 punct /,CbCln3Δex7
R2142 T3750 T3748 nummod 8,CbCln3Δex7
R2143 T3751 T3744 auxpass were,stained
R2144 T3752 T3753 advmod less,brightly
R2145 T3753 T3744 advmod brightly,stained
R2146 T3754 T3744 prep with,stained
R2147 T3755 T3756 amod most,signal
R2148 T3756 T3760 nsubj signal,localizing
R2149 T3757 T3758 compound dextran,FITC
R2150 T3758 T3756 compound FITC,signal
R2151 T3759 T3758 punct -,FITC
R2152 T3760 T3754 pcomp localizing,with
R2153 T3761 T3760 prep to,localizing
R2154 T3762 T3763 amod smaller,vesicles
R2155 T3763 T3761 pobj vesicles,to
R2156 T3764 T3763 acl scattered,vesicles
R2157 T3765 T3764 prep throughout,scattered
R2158 T3766 T3767 det the,cytoplasm
R2159 T3767 T3765 pobj cytoplasm,throughout
R2060 T3636 T3637 nmod ste,t
R2061 T3637 T3635 pobj t,i
R2062 T3638 T3636 cc n,ste
R2057 T3632 T3631 nmod C,o
R2058 T3633 T3630 nsubjpass n,w
R2059 T3635 T3633 prep i,n
R2063 T3640 T3641 amod i,t
R2064 T3645 T3646 amod h,e
R2065 T3663 T3661 amod o,me
R2066 T3669 T3668 amod r,signal
R2067 T3670 T3668 nmod ker,signal
R2068 T3671 T3670 punct (,ker
R2069 T3672 T3670 appos EEA1,ker
R2070 T3673 T3668 punct ),signal
R2071 T3674 T3668 acl observed,signal
R2072 T3675 T3674 prep by,observed
R2073 T3676 T3675 pobj immunostaining,by
R2074 T3677 T3678 punct (,Fig.
R2075 T3679 T3678 nummod 3,Fig.
R2076 T3680 T3678 punct ),Fig.
R2077 T3681 T3667 punct ", ",altered
R2078 T3682 T3683 compound fluid,phase
R2160 T3768 T3767 prep of,cytoplasm
R2161 T3769 T3770 det the,cell
R2162 T3770 T3768 pobj cell,of
R2163 T3771 T3744 punct .,stained

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3264 0-1 UBERON:0002037 denotes C
T3265 1-2 GO:0005764 denotes o
T3266 2-3 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes n
T3267 9-10 GO:0042571 denotes t
T3268 16-17 SO_EXT:wild_type_entity_or_quality denotes t
T3269 18-19 CL_GO_EXT:cell denotes e
T3270 25-26 GO:0005634 denotes e
T3271 31-32 GO:0005634 denotes l
T3272 46-49 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes ker
T3273 51-55 PR_EXT:000006901 denotes EEA1
T3274 101-124 GO:0006907 denotes fluid-phase endocytosis
T3275 156-158 UBERON:0002037 denotes Cb
T3276 158-162 PR_EXT:000005591 denotes Cln3
T3277 169-174 CL_GO_EXT:cell denotes cells
T3278 191-198 CHEBI:52071 denotes dextran
T3279 199-203 CHEBI:37926 denotes FITC
T3280 274-281 CHEBI:52071 denotes dextran
T3281 282-286 CHEBI:37926 denotes FITC
T3282 288-297 SO_EXT:wild_type_entity_or_quality denotes wild-type
T3283 315-320 CL_GO_EXT:cell denotes cells
T3284 355-364 GO:0006897 denotes endocytic
T3285 355-373 GO:0030139 denotes endocytic vesicles
T3286 405-412 GO:0005634 denotes nuclear
T3287 441-443 UBERON:0002037 denotes Cb
T3288 443-447 PR_EXT:000005591 denotes Cln3
T3289 454-459 CL_GO_EXT:cell denotes cells
T3290 497-504 CHEBI:52071 denotes dextran
T3291 505-509 CHEBI:37926 denotes FITC
T3292 517-527 GO_PATO_EXT:biological_localization_process_or_quality denotes localizing
T3293 539-547 GO:0031982 denotes vesicles
T3294 573-582 GO:0005737 denotes cytoplasm
T3295 590-594 CL_GO_EXT:cell denotes cell