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PMC:539061 / 62305-62984 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13609 18-24 SO:0000440 denotes vector
T13610 38-47 _FRAGMENT denotes region of
T13611 55-58 SO:0000837 denotes UTR
T13612 52-58 SO:0000205 denotes 3′ UTR
T13613 62-67 PR:000015308 denotes Snail
T13614 103-114 CHEBI:42098 denotes digoxigenin
T13615 133-142 SO:0000077 denotes antisense
T13616 211-216 PR:P23940 denotes BamH1
T13617 237-251 GO:0097617 denotes hybridizations
T13618 300-305 NCBITaxon:10088 denotes mouse
T13619 306-313 UBERON:0000922 denotes embryos
T13620 386-396 GO:0097617 denotes hybridized
T13621 428-438 GO:0097617 denotes hybridized
T13622 530-533 CHEBI:42098 denotes dig
T13623 541-549 GO:0042571 denotes antibody
T13624 631-634 CHEBI:7586 denotes NBT
T13625 639-643 CHEBI:75508 denotes BCIP
R8872 T13611 T13610 _lexicallyChainedTo UTR,region of

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13627 18-24 SO_EXT:0000440 denotes vector
T13628 38-47 _FRAGMENT denotes region of
T13629 55-58 SO_EXT:0000837 denotes UTR
T13630 52-58 SO_EXT:0000205 denotes 3′ UTR
T13631 62-67 PR_EXT:000015308 denotes Snail
T13632 103-114 CHEBI:42098 denotes digoxigenin
T13633 115-122 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T13634 133-142 SO:0000077 denotes antisense
T13635 143-153 CHEBI_SO_EXT:molecular_probe denotes riboprobes
T13636 178-184 CHEBI_SO_EXT:molecular_probe denotes probes
T13637 211-216 PR_EXT:P23940 denotes BamH1
T13638 237-251 GO:0097617 denotes hybridizations
T13639 300-305 NCBITaxon:10088 denotes mouse
T13640 306-313 UBERON:0000922 denotes embryos
T13641 347-350 CHEBI_EXT:paraformaldehye denotes PFA
T13642 386-396 GO:0097617 denotes hybridized
T13643 428-438 GO:0097617 denotes hybridized
T13644 448-453 CHEBI_SO_EXT:molecular_probe denotes probe
T13645 530-533 CHEBI:42098 denotes dig
T13646 541-549 GO:0042571 denotes antibody
T13647 631-634 CHEBI:7586 denotes NBT
T13648 639-643 CHEBI:75508 denotes BCIP
R8873 T13629 T13628 _lexicallyChainedTo UTR,region of

craft-sa-dev

Id Subject Object Predicate Lexical cue
T13653 0-3 DT denotes The
T13654 18-24 NN denotes vector
T13655 4-9 NN denotes pCRII
T13656 10-14 NN denotes TOPO
T13657 9-10 HYPH denotes -
T13658 15-17 NN denotes TA
T13659 72-76 VBN denotes used
T13660 25-35 VBG denotes containing
T13661 36-37 DT denotes a
T13662 38-44 NN denotes region
T13663 45-47 IN denotes of
T13664 48-51 DT denotes the
T13665 55-58 NN denotes UTR
T13666 52-53 CD denotes 3
T13667 53-54 SYM denotes ′
T13668 59-61 IN denotes of
T13669 62-67 NN denotes Snail
T13670 68-71 VBD denotes was
T13671 77-79 IN denotes as
T13672 80-81 DT denotes a
T13673 82-90 NN denotes template
T13674 91-93 TO denotes to
T13675 94-102 VB denotes generate
T13676 103-114 NN denotes digoxigenin
T13677 115-122 VBN denotes labeled
T13678 114-115 HYPH denotes -
T13679 143-153 NNS denotes riboprobes
T13680 123-128 NN denotes sense
T13681 129-132 CC denotes and
T13682 133-142 NN denotes antisense
T13683 154-155 -LRB- denotes (
T13684 155-160 NNP denotes Roche
T13685 160-161 -RRB- denotes )
T13686 161-162 . denotes .
T13687 162-228 sentence denotes The respective probes were obtained by XhoI and BamH1 digestions.
T13688 163-166 DT denotes The
T13689 178-184 NNS denotes probes
T13690 167-177 JJ denotes respective
T13691 190-198 VBN denotes obtained
T13692 185-189 VBD denotes were
T13693 199-201 IN denotes by
T13694 202-206 NN denotes XhoI
T13695 217-227 NNS denotes digestions
T13696 207-210 CC denotes and
T13697 211-216 NN denotes BamH1
T13698 227-228 . denotes .
T13699 228-314 sentence denotes In situ hybridizations were performed on 10-μm thick sections of E17.5 mouse embryos.
T13700 229-231 FW denotes In
T13701 232-236 FW denotes situ
T13702 237-251 NNS denotes hybridizations
T13703 257-266 VBN denotes performed
T13704 252-256 VBD denotes were
T13705 267-269 IN denotes on
T13706 270-272 CD denotes 10
T13707 273-275 NN denotes μm
T13708 272-273 HYPH denotes -
T13709 276-281 JJ denotes thick
T13710 282-290 NNS denotes sections
T13711 291-293 IN denotes of
T13712 294-299 NN denotes E17.5
T13713 306-313 NNS denotes embryos
T13714 300-305 NN denotes mouse
T13715 313-314 . denotes .
T13716 314-597 sentence denotes The sections were fixed with 4% PFA for 10 min at room temperature, prehybridized at room temperature for 4.5 h, hybridized with the probe (2 μg/ml) at 55 °C for 12–14 h, blocked with 10% NGS, and treated with anti-dig Fab-AP antibody (Roche #1093274) at a 1:2,500 dilution for 3 h.
T13717 315-318 DT denotes The
T13718 319-327 NNS denotes sections
T13719 333-338 VBN denotes fixed
T13720 328-332 VBD denotes were
T13721 339-343 IN denotes with
T13722 344-345 CD denotes 4
T13723 345-346 NN denotes %
T13724 347-350 NN denotes PFA
T13725 351-354 IN denotes for
T13726 355-357 CD denotes 10
T13727 358-361 NN denotes min
T13728 362-364 IN denotes at
T13729 365-369 NN denotes room
T13730 370-381 NN denotes temperature
T13731 381-383 , denotes ,
T13732 383-396 VBN denotes prehybridized
T13733 397-399 IN denotes at
T13734 400-404 NN denotes room
T13735 405-416 NN denotes temperature
T13736 417-420 IN denotes for
T13737 421-424 CD denotes 4.5
T13738 425-426 NN denotes h
T13739 426-428 , denotes ,
T13740 428-438 VBN denotes hybridized
T13741 439-443 IN denotes with
T13742 444-447 DT denotes the
T13743 448-453 NN denotes probe
T13744 454-455 -LRB- denotes (
T13745 457-459 NN denotes μg
T13746 455-456 CD denotes 2
T13747 459-460 SYM denotes /
T13748 460-462 NN denotes ml
T13749 462-463 -RRB- denotes )
T13750 464-466 IN denotes at
T13751 467-469 CD denotes 55
T13752 470-472 NN denotes °C
T13753 473-476 IN denotes for
T13754 477-479 CD denotes 12
T13755 480-482 CD denotes 14
T13756 479-480 SYM denotes –
T13757 483-484 NN denotes h
T13758 484-486 , denotes ,
T13759 486-493 VBN denotes blocked
T13760 494-498 IN denotes with
T13761 499-501 CD denotes 10
T13762 501-502 NN denotes %
T13763 503-506 NN denotes NGS
T13764 506-508 , denotes ,
T13765 508-511 CC denotes and
T13766 512-519 VBN denotes treated
T13767 520-524 IN denotes with
T13768 525-533 JJ denotes anti-dig
T13769 541-549 NN denotes antibody
T13770 534-537 NN denotes Fab
T13771 538-540 NN denotes AP
T13772 537-538 HYPH denotes -
T13773 550-551 -LRB- denotes (
T13774 551-556 NNP denotes Roche
T13775 557-558 SYM denotes #
T13776 558-565 CD denotes 1093274
T13777 565-566 -RRB- denotes )
T13778 567-569 IN denotes at
T13779 570-571 DT denotes a
T13780 580-588 NN denotes dilution
T13781 572-573 CD denotes 1
T13782 574-579 CD denotes 2,500
T13783 573-574 SYM denotes :
T13784 589-592 IN denotes for
T13785 593-594 CD denotes 3
T13786 595-596 NN denotes h
T13787 596-597 . denotes .
T13788 597-679 sentence denotes The sections were incubated with NBT and BCIP until adequate signal was detected.
T13789 598-601 DT denotes The
T13790 602-610 NNS denotes sections
T13791 616-625 VBN denotes incubated
T13792 611-615 VBD denotes were
T13793 626-630 IN denotes with
T13794 631-634 NN denotes NBT
T13795 635-638 CC denotes and
T13796 639-643 NN denotes BCIP
T13797 644-649 IN denotes until
T13798 670-678 VBN denotes detected
T13799 650-658 JJ denotes adequate
T13800 659-665 NN denotes signal
T13801 666-669 VBD denotes was
T13802 678-679 . denotes .
R8876 T13653 T13654 det The,vector
R8877 T13654 T13659 nsubjpass vector,used
R8878 T13655 T13656 compound pCRII,TOPO
R8879 T13656 T13654 compound TOPO,vector
R8880 T13657 T13656 punct -,TOPO
R8881 T13658 T13654 compound TA,vector
R8882 T13660 T13654 acl containing,vector
R8883 T13661 T13662 det a,region
R8884 T13662 T13660 dobj region,containing
R8885 T13663 T13662 prep of,region
R8886 T13664 T13665 det the,UTR
R8887 T13665 T13663 pobj UTR,of
R8888 T13666 T13665 nummod 3,UTR
R8889 T13667 T13666 punct ′,3
R8890 T13668 T13665 prep of,UTR
R8891 T13669 T13668 pobj Snail,of
R8892 T13670 T13659 auxpass was,used
R8893 T13671 T13659 prep as,used
R8894 T13672 T13673 det a,template
R8895 T13673 T13671 pobj template,as
R8896 T13674 T13675 aux to,generate
R8897 T13675 T13659 advcl generate,used
R8898 T13676 T13677 npadvmod digoxigenin,labeled
R8899 T13677 T13679 amod labeled,riboprobes
R8900 T13678 T13677 punct -,labeled
R8901 T13679 T13675 dobj riboprobes,generate
R8902 T13680 T13679 nmod sense,riboprobes
R8903 T13681 T13680 cc and,sense
R8904 T13682 T13680 conj antisense,sense
R8905 T13683 T13684 punct (,Roche
R8906 T13684 T13679 parataxis Roche,riboprobes
R8907 T13685 T13684 punct ),Roche
R8908 T13686 T13659 punct .,used
R8909 T13688 T13689 det The,probes
R8910 T13689 T13691 nsubjpass probes,obtained
R8911 T13690 T13689 amod respective,probes
R8912 T13692 T13691 auxpass were,obtained
R8913 T13693 T13691 prep by,obtained
R8914 T13694 T13695 nmod XhoI,digestions
R8915 T13695 T13693 pobj digestions,by
R8916 T13696 T13694 cc and,XhoI
R8917 T13697 T13694 conj BamH1,XhoI
R8918 T13698 T13691 punct .,obtained
R8919 T13700 T13701 advmod In,situ
R8920 T13701 T13702 amod situ,hybridizations
R8921 T13702 T13703 nsubjpass hybridizations,performed
R8922 T13704 T13703 auxpass were,performed
R8923 T13705 T13703 prep on,performed
R8924 T13706 T13707 nummod 10,μm
R8925 T13707 T13709 npadvmod μm,thick
R8926 T13708 T13707 punct -,μm
R8927 T13709 T13710 amod thick,sections
R8928 T13710 T13705 pobj sections,on
R8929 T13711 T13710 prep of,sections
R8930 T13712 T13713 compound E17.5,embryos
R8931 T13713 T13711 pobj embryos,of
R8932 T13714 T13713 compound mouse,embryos
R8933 T13715 T13703 punct .,performed
R8934 T13717 T13718 det The,sections
R8935 T13718 T13719 nsubjpass sections,fixed
R8936 T13720 T13719 auxpass were,fixed
R8937 T13721 T13719 prep with,fixed
R8938 T13722 T13723 nummod 4,%
R8939 T13723 T13724 compound %,PFA
R8940 T13724 T13721 pobj PFA,with
R8941 T13725 T13719 prep for,fixed
R8942 T13726 T13727 nummod 10,min
R8943 T13727 T13725 pobj min,for
R8944 T13728 T13719 prep at,fixed
R8945 T13729 T13730 compound room,temperature
R8946 T13730 T13728 pobj temperature,at
R8947 T13731 T13719 punct ", ",fixed
R8948 T13732 T13719 conj prehybridized,fixed
R8949 T13733 T13732 prep at,prehybridized
R8950 T13734 T13735 compound room,temperature
R8951 T13735 T13733 pobj temperature,at
R8952 T13736 T13732 prep for,prehybridized
R8953 T13737 T13738 nummod 4.5,h
R8954 T13738 T13736 pobj h,for
R8955 T13739 T13732 punct ", ",prehybridized
R8956 T13740 T13732 conj hybridized,prehybridized
R8957 T13741 T13740 prep with,hybridized
R8958 T13742 T13743 det the,probe
R8959 T13743 T13741 pobj probe,with
R8960 T13744 T13745 punct (,μg
R8961 T13745 T13743 parataxis μg,probe
R8962 T13746 T13745 nummod 2,μg
R8963 T13747 T13748 punct /,ml
R8964 T13748 T13745 prep ml,μg
R8965 T13749 T13745 punct ),μg
R8966 T13750 T13740 prep at,hybridized
R8967 T13751 T13752 nummod 55,°C
R8968 T13752 T13750 pobj °C,at
R8969 T13753 T13740 prep for,hybridized
R8970 T13754 T13755 quantmod 12,14
R8971 T13755 T13757 nummod 14,h
R8972 T13756 T13755 punct –,14
R8973 T13757 T13753 pobj h,for
R8974 T13758 T13740 punct ", ",hybridized
R8975 T13759 T13740 conj blocked,hybridized
R8976 T13760 T13759 prep with,blocked
R8977 T13761 T13762 nummod 10,%
R8978 T13762 T13763 compound %,NGS
R8979 T13763 T13760 pobj NGS,with
R8980 T13764 T13759 punct ", ",blocked
R8981 T13765 T13759 cc and,blocked
R8982 T13766 T13759 conj treated,blocked
R8983 T13767 T13766 prep with,treated
R8984 T13768 T13769 amod anti-dig,antibody
R8985 T13769 T13767 pobj antibody,with
R8986 T13770 T13771 compound Fab,AP
R8987 T13771 T13769 compound AP,antibody
R8988 T13772 T13771 punct -,AP
R8989 T13773 T13774 punct (,Roche
R8990 T13774 T13769 parataxis Roche,antibody
R8991 T13775 T13774 punct #,Roche
R8992 T13776 T13774 nummod 1093274,Roche
R8993 T13777 T13774 punct ),Roche
R8994 T13778 T13766 prep at,treated
R8995 T13779 T13780 det a,dilution
R8996 T13780 T13778 pobj dilution,at
R8997 T13781 T13782 quantmod 1,"2,500"
R8998 T13782 T13780 nummod "2,500",dilution
R8999 T13783 T13782 punct :,"2,500"
R9000 T13784 T13766 prep for,treated
R9001 T13785 T13786 nummod 3,h
R9002 T13786 T13784 pobj h,for
R9003 T13787 T13719 punct .,fixed
R9004 T13789 T13790 det The,sections
R9005 T13790 T13791 nsubjpass sections,incubated
R9006 T13792 T13791 auxpass were,incubated
R9007 T13793 T13791 prep with,incubated
R9008 T13794 T13793 pobj NBT,with
R9009 T13795 T13794 cc and,NBT
R9010 T13796 T13794 conj BCIP,NBT
R9011 T13797 T13798 mark until,detected
R9012 T13798 T13791 advcl detected,incubated
R9013 T13799 T13800 amod adequate,signal
R9014 T13800 T13798 nsubjpass signal,detected
R9015 T13801 T13798 auxpass was,detected
R9016 T13802 T13791 punct .,incubated