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PMC:516044 / 931-1794 JSONTXT

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Id Subject Object Predicate Lexical cue
T394 0-7 NN denotes Pendrin
T395 12-17 VBN denotes found
T396 8-11 VBD denotes was
T397 18-20 IN denotes in
T398 21-24 DT denotes the
T399 25-32 NN denotes cochlea
T400 33-35 IN denotes in
T401 36-42 JJ denotes apical
T402 43-52 NNS denotes membranes
T403 53-55 IN denotes of
T404 56-62 JJ denotes spiral
T405 74-79 NNS denotes cells
T406 63-73 NN denotes prominence
T407 80-83 CC denotes and
T408 84-91 NN denotes spindle
T409 92-98 VBN denotes shaped
T410 91-92 HYPH denotes -
T411 99-104 NNS denotes cells
T412 105-107 IN denotes of
T413 108-113 NN denotes stria
T414 114-124 NN denotes vascularis
T415 124-126 , denotes ,
T416 126-128 IN denotes in
T417 129-134 JJ denotes outer
T418 151-156 NNS denotes cells
T419 135-141 NN denotes sulcus
T420 142-145 CC denotes and
T421 146-150 NN denotes root
T422 156-157 . denotes .
T423 157-294 sentence denotes Endolymph volume in Slc26a4-/- mice was increased and tissue masses in areas normally occupied by type I and II fibrocytes were reduced.
T424 158-167 NN denotes Endolymph
T425 168-174 NN denotes volume
T426 198-207 VBN denotes increased
T427 175-177 IN denotes in
T428 178-185 NN denotes Slc26a4
T429 189-193 NNS denotes mice
T430 185-186 SYM denotes -
T431 186-187 HYPH denotes /
T432 187-188 SYM denotes -
T433 194-197 VBD denotes was
T434 208-211 CC denotes and
T435 212-218 NN denotes tissue
T436 219-225 NNS denotes masses
T437 286-293 VBN denotes reduced
T438 226-228 IN denotes in
T439 229-234 NNS denotes areas
T440 235-243 RB denotes normally
T441 244-252 VBN denotes occupied
T442 253-255 IN denotes by
T443 256-260 NN denotes type
T444 261-262 CD denotes I
T445 270-280 NNS denotes fibrocytes
T446 263-266 CC denotes and
T447 267-269 CD denotes II
T448 281-285 VBD denotes were
T449 293-294 . denotes .
T450 294-452 sentence denotes Slc26a4-/- mice lacked the endocochlear potential, which is generated across the basal cell barrier by the K+ channel KCNJ10 localized in intermediate cells.
T451 295-302 NN denotes Slc26a4
T452 306-310 NNS denotes mice
T453 302-303 SYM denotes -
T454 303-304 HYPH denotes /
T455 304-305 SYM denotes -
T456 311-317 VBD denotes lacked
T457 318-321 DT denotes the
T458 335-344 NN denotes potential
T459 322-334 JJ denotes endocochlear
T460 344-346 , denotes ,
T461 346-351 WDT denotes which
T462 355-364 VBN denotes generated
T463 352-354 VBZ denotes is
T464 365-371 IN denotes across
T465 372-375 DT denotes the
T466 387-394 NN denotes barrier
T467 376-381 JJ denotes basal
T468 382-386 NN denotes cell
T469 395-397 IN denotes by
T470 398-401 DT denotes the
T471 405-412 NN denotes channel
T472 402-403 NN denotes K
T473 403-404 SYM denotes +
T474 413-419 NN denotes KCNJ10
T475 420-429 VBN denotes localized
T476 430-432 IN denotes in
T477 433-445 JJ denotes intermediate
T478 446-451 NNS denotes cells
T479 451-452 . denotes .
T480 452-534 sentence denotes Stria vascularis was hyperpigmented, suggesting unalleviated free radical damage.
T481 453-458 NN denotes Stria
T482 459-469 NN denotes vascularis
T483 470-473 VBD denotes was
T484 474-488 JJ denotes hyperpigmented
T485 488-490 , denotes ,
T486 490-500 VBG denotes suggesting
T487 501-513 JJ denotes unalleviated
T488 527-533 NN denotes damage
T489 514-518 JJ denotes free
T490 519-526 NN denotes radical
T491 533-534 . denotes .
T492 534-653 sentence denotes The basal cell barrier appeared intact; intermediate cells and KCNJ10 mRNA were present but KCNJ10 protein was absent.
T493 535-538 DT denotes The
T494 550-557 NN denotes barrier
T495 539-544 JJ denotes basal
T496 545-549 NN denotes cell
T497 558-566 VBD denotes appeared
T498 610-614 VBD denotes were
T499 567-573 JJ denotes intact
T500 573-574 : denotes ;
T501 575-587 JJ denotes intermediate
T502 588-593 NNS denotes cells
T503 594-597 CC denotes and
T504 598-604 NN denotes KCNJ10
T505 605-609 NN denotes mRNA
T506 615-622 JJ denotes present
T507 623-626 CC denotes but
T508 627-633 NN denotes KCNJ10
T509 634-641 NN denotes protein
T510 642-645 VBD denotes was
T511 646-652 JJ denotes absent
T512 652-653 . denotes .
T513 653-863 sentence denotes Endolymphatic K+ concentrations were normal and membrane proteins necessary for K+ secretion were present, including the K+ channel KCNQ1 and KCNE1, Na+/2Cl-/K+ cotransporter SLC12A2 and the gap junction GJB2.
T514 654-667 JJ denotes Endolymphatic
T515 671-685 NNS denotes concentrations
T516 668-669 NN denotes K
T517 669-670 SYM denotes +
T518 686-690 VBD denotes were
T519 691-697 JJ denotes normal
T520 698-701 CC denotes and
T521 702-710 NN denotes membrane
T522 711-719 NN denotes proteins
T523 747-751 VBD denotes were
T524 720-729 JJ denotes necessary
T525 730-733 IN denotes for
T526 734-735 NN denotes K
T527 737-746 NN denotes secretion
T528 735-736 SYM denotes +
T529 752-759 JJ denotes present
T530 759-761 , denotes ,
T531 761-770 VBG denotes including
T532 771-774 DT denotes the
T533 778-785 NN denotes channel
T534 775-776 NN denotes K
T535 776-777 SYM denotes +
T536 786-791 NN denotes KCNQ1
T537 792-795 CC denotes and
T538 796-801 NN denotes KCNE1
T539 801-803 , denotes ,
T540 803-805 NN denotes Na
T541 815-828 NN denotes cotransporter
T542 805-806 SYM denotes +
T543 806-807 HYPH denotes /
T544 807-810 NN denotes 2Cl
T545 810-811 SYM denotes -
T546 811-812 HYPH denotes /
T547 812-813 NN denotes K
T548 813-814 SYM denotes +
T549 829-836 NN denotes SLC12A2
T550 837-840 CC denotes and
T551 841-844 DT denotes the
T552 849-857 NN denotes junction
T553 845-848 NN denotes gap
T554 858-862 NN denotes GJB2
T555 862-863 . denotes .
R143 T394 T395 nsubjpass Pendrin,found
R144 T396 T395 auxpass was,found
R145 T397 T395 prep in,found
R146 T398 T399 det the,cochlea
R147 T399 T397 pobj cochlea,in
R148 T400 T395 prep in,found
R149 T401 T402 amod apical,membranes
R150 T402 T400 pobj membranes,in
R151 T403 T402 prep of,membranes
R152 T404 T405 amod spiral,cells
R153 T405 T403 pobj cells,of
R154 T406 T405 compound prominence,cells
R155 T407 T402 cc and,membranes
R156 T408 T409 npadvmod spindle,shaped
R157 T409 T411 amod shaped,cells
R158 T410 T409 punct -,shaped
R159 T411 T402 conj cells,membranes
R160 T412 T411 prep of,cells
R161 T413 T414 compound stria,vascularis
R162 T414 T412 pobj vascularis,of
R163 T415 T395 punct ", ",found
R164 T416 T395 prep in,found
R165 T417 T418 amod outer,cells
R166 T418 T416 pobj cells,in
R167 T419 T418 nmod sulcus,cells
R168 T420 T419 cc and,sulcus
R169 T421 T419 conj root,sulcus
R170 T422 T395 punct .,found
R171 T424 T425 compound Endolymph,volume
R172 T425 T426 nsubjpass volume,increased
R173 T427 T425 prep in,volume
R174 T428 T429 nmod Slc26a4,mice
R175 T429 T427 pobj mice,in
R176 T430 T428 punct -,Slc26a4
R177 T431 T428 punct /,Slc26a4
R178 T432 T428 punct -,Slc26a4
R179 T433 T426 auxpass was,increased
R180 T434 T426 cc and,increased
R181 T435 T436 compound tissue,masses
R182 T436 T437 nsubjpass masses,reduced
R183 T437 T426 conj reduced,increased
R184 T438 T436 prep in,masses
R185 T439 T438 pobj areas,in
R186 T440 T441 advmod normally,occupied
R187 T441 T439 acl occupied,areas
R188 T442 T441 agent by,occupied
R189 T443 T444 nmod type,I
R190 T444 T445 nummod I,fibrocytes
R191 T445 T442 pobj fibrocytes,by
R192 T446 T444 cc and,I
R193 T447 T444 conj II,I
R194 T448 T437 auxpass were,reduced
R195 T449 T437 punct .,reduced
R196 T451 T452 nmod Slc26a4,mice
R197 T452 T456 nsubj mice,lacked
R198 T453 T451 punct -,Slc26a4
R199 T454 T451 punct /,Slc26a4
R200 T455 T451 punct -,Slc26a4
R201 T457 T458 det the,potential
R202 T458 T456 dobj potential,lacked
R203 T459 T458 amod endocochlear,potential
R204 T460 T458 punct ", ",potential
R205 T461 T462 dep which,generated
R206 T462 T458 relcl generated,potential
R207 T463 T462 auxpass is,generated
R208 T464 T462 prep across,generated
R209 T465 T466 det the,barrier
R210 T466 T464 pobj barrier,across
R211 T467 T466 amod basal,barrier
R212 T468 T466 compound cell,barrier
R213 T469 T462 agent by,generated
R214 T470 T471 det the,channel
R215 T471 T469 pobj channel,by
R216 T472 T471 nmod K,channel
R217 T473 T472 punct +,K
R218 T474 T471 appos KCNJ10,channel
R219 T475 T471 acl localized,channel
R220 T476 T475 prep in,localized
R221 T477 T478 amod intermediate,cells
R222 T478 T476 pobj cells,in
R223 T479 T456 punct .,lacked
R224 T481 T482 compound Stria,vascularis
R225 T482 T483 nsubj vascularis,was
R226 T484 T483 acomp hyperpigmented,was
R227 T485 T483 punct ", ",was
R228 T486 T483 advcl suggesting,was
R229 T487 T488 amod unalleviated,damage
R230 T488 T486 dobj damage,suggesting
R231 T489 T490 amod free,radical
R232 T490 T488 compound radical,damage
R233 T491 T483 punct .,was
R234 T493 T494 det The,barrier
R235 T494 T497 nsubj barrier,appeared
R236 T495 T494 amod basal,barrier
R237 T496 T494 compound cell,barrier
R238 T497 T498 ccomp appeared,were
R239 T499 T497 oprd intact,appeared
R240 T500 T498 punct ;,were
R241 T501 T502 amod intermediate,cells
R242 T502 T498 nsubj cells,were
R243 T503 T502 cc and,cells
R244 T504 T505 compound KCNJ10,mRNA
R245 T505 T502 conj mRNA,cells
R246 T506 T498 acomp present,were
R247 T507 T498 cc but,were
R248 T508 T509 compound KCNJ10,protein
R249 T509 T510 nsubj protein,was
R250 T510 T498 conj was,were
R251 T511 T510 acomp absent,was
R252 T512 T498 punct .,were
R253 T514 T515 amod Endolymphatic,concentrations
R254 T515 T518 nsubj concentrations,were
R255 T516 T515 nmod K,concentrations
R256 T517 T516 punct +,K
R257 T519 T518 acomp normal,were
R258 T520 T518 cc and,were
R259 T521 T522 compound membrane,proteins
R260 T522 T523 nsubj proteins,were
R261 T523 T518 conj were,were
R262 T524 T522 amod necessary,proteins
R263 T525 T524 prep for,necessary
R264 T526 T527 nmod K,secretion
R265 T527 T525 pobj secretion,for
R266 T528 T526 punct +,K
R267 T529 T523 acomp present,were
R268 T530 T523 punct ", ",were
R269 T531 T523 prep including,were
R270 T532 T533 det the,channel
R271 T533 T531 pobj channel,including
R272 T534 T533 nmod K,channel
R273 T535 T534 punct +,K
R274 T536 T533 appos KCNQ1,channel
R275 T537 T536 cc and,KCNQ1
R276 T538 T536 conj KCNE1,KCNQ1
R277 T539 T533 punct ", ",channel
R278 T540 T541 nmod Na,cotransporter
R279 T541 T549 compound cotransporter,SLC12A2
R280 T542 T540 punct +,Na
R281 T543 T540 punct /,Na
R282 T544 T540 appos 2Cl,Na
R283 T545 T544 punct -,2Cl
R284 T546 T540 punct /,Na
R285 T547 T540 appos K,Na
R286 T548 T547 punct +,K
R287 T549 T533 conj SLC12A2,channel
R288 T550 T549 cc and,SLC12A2
R289 T551 T552 det the,junction
R290 T552 T549 conj junction,SLC12A2
R291 T553 T552 compound gap,junction
R292 T554 T552 appos GJB2,junction
R293 T555 T523 punct .,were

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T171 0-7 PR_EXT:000015039 denotes Pendrin
T172 25-32 UBERON:0001844 denotes cochlea
T173 36-55 _FRAGMENT denotes apical membranes of
T174 74-79 GO:0016324 denotes cells
T175 56-73 UBERON:0028194 denotes spiral prominence
T176 74-79 CL_GO_EXT:cell denotes cells
T177 99-104 CL_GO_EXT:cell denotes cells
T178 108-124 UBERON:0002282 denotes stria vascularis
T179 129-141 UBERON:0008832 denotes outer sulcus
T180 151-156 CL_GO_EXT:cell denotes cells
T181 158-167 UBERON:0001852 denotes Endolymph
T182 178-185 PR_EXT:000015039 denotes Slc26a4
T183 185-186 SO_EXT:sequence_nullness_or_absence denotes -
T184 187-188 SO_EXT:sequence_nullness_or_absence denotes -
T185 189-193 NCBITaxon:10088 denotes mice
T186 212-218 UBERON:0000479 denotes tissue
T187 256-262 _FRAGMENT denotes type I
T188 270-280 CL:0002670 denotes fibrocytes
T189 256-260 _FRAGMENT denotes type
T190 267-280 CL:0002666 denotes II fibrocytes
T191 295-302 PR_EXT:000015039 denotes Slc26a4
T192 302-303 SO_EXT:sequence_nullness_or_absence denotes -
T193 304-305 SO_EXT:sequence_nullness_or_absence denotes -
T194 306-310 NCBITaxon:10088 denotes mice
T195 376-386 CL:0000646 denotes basal cell
T196 382-386 CL_GO_EXT:cell denotes cell
T197 402-404 CHEBI:29103 denotes K+
T198 402-412 GO_EXT:0005267 denotes K+ channel
T199 413-419 PR_EXT:000001979 denotes KCNJ10
T200 420-429 GO_PATO_EXT:biological_localization_process_or_quality denotes localized
T201 433-451 CL:0002486 denotes intermediate cells
T202 446-451 CL_GO_EXT:cell denotes cells
T203 453-469 UBERON:0002282 denotes Stria vascularis
T204 479-488 CHEBI_EXT:26130 denotes pigmented
T205 514-526 CHEBI:26519 denotes free radical
T206 539-549 CL:0000646 denotes basal cell
T207 545-549 CL_GO_EXT:cell denotes cell
T208 575-593 CL:0002486 denotes intermediate cells
T209 588-593 CL_GO_EXT:cell denotes cells
T210 598-604 PR_EXT:000001979 denotes KCNJ10
T211 605-609 CHEBI_SO_EXT:mRNA denotes mRNA
T212 627-633 PR_EXT:000001979 denotes KCNJ10
T213 634-641 CHEBI_PR_EXT:protein denotes protein
T214 654-667 UBERON:0001852 denotes Endolymphatic
T215 668-670 CHEBI:29103 denotes K+
T216 702-710 GO:0016020 denotes membrane
T217 711-719 CHEBI_PR_EXT:protein denotes proteins
T218 734-736 CHEBI:29103 denotes K+
T219 737-746 GO_EXT:secretion_entity_or_process denotes secretion
T220 775-777 CHEBI:29103 denotes K+
T221 775-785 GO_EXT:0005267 denotes K+ channel
T222 786-791 PR_EXT:000000728 denotes KCNQ1
T223 796-801 PR_EXT:000009255 denotes KCNE1
T224 803-806 CHEBI:29101 denotes Na+
T225 803-828 GO_EXT:0008511 denotes Na+/2Cl-/K+ cotransporter
T226 812-814 CHEBI:29103 denotes K+
T227 829-836 PR_EXT:000014925 denotes SLC12A2
T228 845-857 GO:0005921 denotes gap junction
T229 858-862 PR_EXT:000007998 denotes GJB2
R4 T174 T173 _lexicallyChainedTo cells,apical membranes of
R5 T188 T187 _lexicallyChainedTo fibrocytes,type I
R6 T190 T189 _lexicallyChainedTo II fibrocytes,type

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T97 0-7 PR:000015039 denotes Pendrin
T98 25-32 UBERON:0001844 denotes cochlea
T99 36-55 _FRAGMENT denotes apical membranes of
T100 74-79 GO:0016324 denotes cells
T101 56-73 UBERON:0028194 denotes spiral prominence
T102 108-124 UBERON:0002282 denotes stria vascularis
T103 129-141 UBERON:0008832 denotes outer sulcus
T104 158-167 UBERON:0001852 denotes Endolymph
T105 178-185 PR:000015039 denotes Slc26a4
T106 189-193 NCBITaxon:10088 denotes mice
T107 212-218 UBERON:0000479 denotes tissue
T108 256-262 _FRAGMENT denotes type I
T109 270-280 CL:0002670 denotes fibrocytes
T110 256-260 _FRAGMENT denotes type
T111 267-280 CL:0002666 denotes II fibrocytes
T112 295-302 PR:000015039 denotes Slc26a4
T113 306-310 NCBITaxon:10088 denotes mice
T114 376-386 CL:0000646 denotes basal cell
T115 402-404 CHEBI:29103 denotes K+
T116 413-419 PR:000001979 denotes KCNJ10
T117 433-451 CL:0002486 denotes intermediate cells
T118 453-469 UBERON:0002282 denotes Stria vascularis
T119 479-488 CHEBI:26130 denotes pigmented
T120 514-526 CHEBI:26519 denotes free radical
T121 539-549 CL:0000646 denotes basal cell
T122 575-593 CL:0002486 denotes intermediate cells
T123 598-604 PR:000001979 denotes KCNJ10
T124 627-633 PR:000001979 denotes KCNJ10
T125 654-667 UBERON:0001852 denotes Endolymphatic
T126 668-670 CHEBI:29103 denotes K+
T127 702-710 GO:0016020 denotes membrane
T128 734-736 CHEBI:29103 denotes K+
T129 775-777 CHEBI:29103 denotes K+
T130 786-791 PR:000000728 denotes KCNQ1
T131 796-801 PR:000009255 denotes KCNE1
T132 803-806 CHEBI:29101 denotes Na+
T133 812-814 CHEBI:29103 denotes K+
T134 829-836 PR:000014925 denotes SLC12A2
T135 845-857 GO:0005921 denotes gap junction
T136 858-862 PR:000007998 denotes GJB2
R1 T100 T99 _lexicallyChainedTo cells,apical membranes of
R2 T109 T108 _lexicallyChainedTo fibrocytes,type I
R3 T111 T110 _lexicallyChainedTo II fibrocytes,type