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PMC:441373 / 31806-32904 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T13814 1013-1014 . denotes .
T13815 1014-1098 sentence denotes In C, D and E, '*' denotes one or more members of the TACC or Aurora kinase family.
T13816 1015-1017 IN denotes In
T13817 1034-1041 VBZ denotes denotes
T13617 0-10 JJ denotes Functional
T13618 11-20 NN denotes evolution
T13619 21-23 IN denotes of
T13620 24-27 DT denotes the
T13621 33-41 NN denotes proteins
T13622 28-32 NN denotes TACC
T13623 42-49 VBN denotes modeled
T13624 50-52 IN denotes in
T13625 53-55 NNP denotes C.
T13626 56-63 NNP denotes elegans
T13627 64-67 CC denotes and
T13628 68-70 NNP denotes D.
T13629 71-83 NNP denotes melanogaster
T13630 83-84 . denotes .
T13631 84-212 sentence denotes (A). C. elegans interaction map shows empirically defined interactions of ceTAC, and extrapolated interactions defined by [28].
T13632 85-86 -LRB- denotes (
T13633 86-87 LS denotes A
T13634 117-122 VBZ denotes shows
T13635 87-88 -RRB- denotes )
T13636 88-89 . denotes .
T13637 90-92 NNP denotes C.
T13638 93-100 NNP denotes elegans
T13639 113-116 NN denotes map
T13640 101-112 NN denotes interaction
T13641 123-134 RB denotes empirically
T13642 135-142 VBN denotes defined
T13643 143-155 NNS denotes interactions
T13644 156-158 IN denotes of
T13645 159-164 NN denotes ceTAC
T13646 164-166 , denotes ,
T13647 166-169 CC denotes and
T13648 170-182 VBN denotes extrapolated
T13649 183-195 NNS denotes interactions
T13650 196-203 VBN denotes defined
T13651 204-206 IN denotes by
T13652 207-208 -LRB- denotes [
T13653 208-210 CD denotes 28
T13654 210-211 -RRB- denotes ]
T13655 211-212 . denotes .
T13656 212-483 sentence denotes (B): Using the BIND database [29], DTACC directly binds to TBPH and CG14540, and thus indirectly to chromatin remodeling complexes (SWI/SNF and histone acetyltransferases), DNA damage repair machinery (via RAD23), and RNA splicing, transport and translational machinery.
T13657 213-214 -LRB- denotes (
T13658 214-215 LS denotes B
T13659 263-268 VBZ denotes binds
T13660 215-216 -RRB- denotes )
T13661 216-218 : denotes :
T13662 218-223 VBG denotes Using
T13663 224-227 DT denotes the
T13664 233-241 NN denotes database
T13665 228-232 NNP denotes BIND
T13666 242-243 -LRB- denotes [
T13667 243-245 CD denotes 29
T13668 245-246 -RRB- denotes ]
T13669 246-248 , denotes ,
T13670 248-253 NN denotes DTACC
T13671 254-262 RB denotes directly
T13672 269-271 IN denotes to
T13673 272-276 NN denotes TBPH
T13674 277-280 CC denotes and
T13675 281-288 NN denotes CG14540
T13676 288-290 , denotes ,
T13677 290-293 CC denotes and
T13678 294-298 RB denotes thus
T13679 299-309 RB denotes indirectly
T13680 310-312 IN denotes to
T13681 313-322 NN denotes chromatin
T13682 323-333 NN denotes remodeling
T13683 334-343 NNS denotes complexes
T13684 344-345 -LRB- denotes (
T13685 345-348 NN denotes SWI
T13686 349-352 NN denotes SNF
T13687 348-349 HYPH denotes /
T13688 353-356 CC denotes and
T13689 357-364 NN denotes histone
T13690 365-383 NNS denotes acetyltransferases
T13691 383-384 -RRB- denotes )
T13692 384-386 , denotes ,
T13693 386-389 NN denotes DNA
T13694 390-396 NN denotes damage
T13695 397-403 NN denotes repair
T13696 404-413 NN denotes machinery
T13697 414-415 -LRB- denotes (
T13698 415-418 IN denotes via
T13699 419-424 NN denotes RAD23
T13700 424-425 -RRB- denotes )
T13701 425-427 , denotes ,
T13702 427-430 CC denotes and
T13703 431-434 NN denotes RNA
T13704 435-443 NN denotes splicing
T13705 473-482 NN denotes machinery
T13706 443-445 , denotes ,
T13707 445-454 NN denotes transport
T13708 455-458 CC denotes and
T13709 459-472 JJ denotes translational
T13710 482-483 . denotes .
T13711 483-627 sentence denotes (C): Predicted interaction map for vertebrate TACCs, based upon ceTAC, suggests an indirect interaction with the nuclear hormone receptor RXRβ.
T13712 484-485 -LRB- denotes (
T13713 485-486 LS denotes C
T13714 555-563 VBZ denotes suggests
T13715 486-487 -RRB- denotes )
T13716 487-489 : denotes :
T13717 489-498 VBN denotes Predicted
T13718 499-510 NN denotes interaction
T13719 511-514 NN denotes map
T13720 515-518 IN denotes for
T13721 519-529 NN denotes vertebrate
T13722 530-535 NNS denotes TACCs
T13723 535-537 , denotes ,
T13724 537-542 VBN denotes based
T13725 543-547 IN denotes upon
T13726 548-553 NN denotes ceTAC
T13727 553-555 , denotes ,
T13728 564-566 DT denotes an
T13729 576-587 NN denotes interaction
T13730 567-575 JJ denotes indirect
T13731 588-592 IN denotes with
T13732 593-596 DT denotes the
T13733 613-621 NN denotes receptor
T13734 597-604 JJ denotes nuclear
T13735 605-612 NN denotes hormone
T13736 622-626 NN denotes RXRβ
T13737 626-627 . denotes .
T13738 627-828 sentence denotes It is also of interest that this predicts a functional interaction with the LDB family, members of which are also found in TACC containing paralogous segments noted in Figs 2, 3 and Additional file 1.
T13739 628-630 PRP denotes It
T13740 631-633 VBZ denotes is
T13741 634-638 RB denotes also
T13742 639-641 IN denotes of
T13743 642-650 NN denotes interest
T13744 651-655 IN denotes that
T13745 661-669 VBZ denotes predicts
T13746 656-660 DT denotes this
T13747 670-671 DT denotes a
T13748 683-694 NN denotes interaction
T13749 672-682 JJ denotes functional
T13750 695-699 IN denotes with
T13751 700-703 DT denotes the
T13752 708-714 NN denotes family
T13753 704-707 NN denotes LDB
T13754 714-716 , denotes ,
T13755 716-723 NNS denotes members
T13756 742-747 VBN denotes found
T13757 724-726 IN denotes of
T13758 727-732 WDT denotes which
T13759 733-736 VBP denotes are
T13760 737-741 RB denotes also
T13761 748-750 IN denotes in
T13762 751-755 NN denotes TACC
T13763 756-766 VBG denotes containing
T13764 778-786 NNS denotes segments
T13765 767-777 JJ denotes paralogous
T13766 787-792 VBN denotes noted
T13767 793-795 IN denotes in
T13768 796-800 NNS denotes Figs
T13769 804-805 CD denotes 3
T13770 801-802 CD denotes 2
T13771 802-804 , denotes ,
T13772 806-809 CC denotes and
T13773 810-820 JJ denotes Additional
T13774 821-825 NN denotes file
T13775 826-827 CD denotes 1
T13776 827-828 . denotes .
T13777 828-882 sentence denotes (D): Predicted TACC interaction map based upon DTACC.
T13778 829-830 -LRB- denotes (
T13779 830-831 LS denotes D
T13780 861-864 NN denotes map
T13781 831-832 -RRB- denotes )
T13782 832-834 : denotes :
T13783 834-843 VBN denotes Predicted
T13784 844-848 NN denotes TACC
T13785 849-860 NN denotes interaction
T13786 865-870 VBN denotes based
T13787 871-875 IN denotes upon
T13788 876-881 NN denotes DTACC
T13789 881-882 . denotes .
T13790 882-936 sentence denotes (E): Vertebrate TACC interactions identified to date.
T13791 883-884 -LRB- denotes (
T13792 884-885 LS denotes E
T13793 904-916 NNS denotes interactions
T13794 885-886 -RRB- denotes )
T13795 886-888 : denotes :
T13796 888-898 NN denotes Vertebrate
T13797 899-903 NN denotes TACC
T13798 917-927 VBN denotes identified
T13799 928-930 IN denotes to
T13800 931-935 NN denotes date
T13801 935-936 . denotes .
T13802 936-1014 sentence denotes ? denotes uncertainty over the identity of a functional vertebrate homologue.
T13803 937-938 SYM denotes ?
T13804 939-946 VBZ denotes denotes
T13805 947-958 NN denotes uncertainty
T13806 959-963 IN denotes over
T13807 964-967 DT denotes the
T13808 968-976 NN denotes identity
T13809 977-979 IN denotes of
T13810 980-981 DT denotes a
T13811 1004-1013 NN denotes homologue
T13812 982-992 JJ denotes functional
T13813 993-1003 NN denotes vertebrate
T13818 1018-1019 NN denotes C
T13819 1019-1021 , denotes ,
T13820 1021-1022 NN denotes D
T13821 1023-1026 CC denotes and
T13822 1027-1028 NN denotes E
T13823 1028-1030 , denotes ,
T13824 1030-1031 `` denotes '
T13825 1032-1033 '' denotes '
T13826 1031-1032 SYM denotes *
T13827 1042-1045 CD denotes one
T13828 1054-1061 NNS denotes members
T13829 1046-1048 CC denotes or
T13830 1049-1053 JJR denotes more
T13831 1062-1064 IN denotes of
T13832 1065-1068 DT denotes the
T13833 1091-1097 NN denotes family
T13834 1069-1073 NN denotes TACC
T13835 1074-1076 CC denotes or
T13836 1077-1083 NN denotes Aurora
T13837 1084-1090 NN denotes kinase
T13838 1097-1098 . denotes .
R8791 T13617 T13618 amod Functional,evolution
R8792 T13619 T13618 prep of,evolution
R8793 T13620 T13621 det the,proteins
R8794 T13621 T13619 pobj proteins,of
R8795 T13622 T13621 compound TACC,proteins
R8796 T13623 T13618 acl modeled,evolution
R8797 T13624 T13623 prep in,modeled
R8798 T13625 T13626 compound C.,elegans
R8799 T13626 T13624 pobj elegans,in
R8800 T13627 T13626 cc and,elegans
R8801 T13628 T13629 compound D.,melanogaster
R8802 T13629 T13626 conj melanogaster,elegans
R8803 T13630 T13618 punct .,evolution
R8804 T13632 T13633 punct (,A
R8805 T13633 T13634 meta A,shows
R8806 T13635 T13633 punct ),A
R8807 T13636 T13633 punct .,A
R8808 T13637 T13638 compound C.,elegans
R8809 T13638 T13639 compound elegans,map
R8810 T13639 T13634 nsubj map,shows
R8811 T13640 T13639 compound interaction,map
R8812 T13641 T13642 advmod empirically,defined
R8813 T13642 T13643 amod defined,interactions
R8814 T13643 T13634 dobj interactions,shows
R8815 T13644 T13643 prep of,interactions
R8816 T13645 T13644 pobj ceTAC,of
R8817 T13646 T13643 punct ", ",interactions
R8818 T13647 T13643 cc and,interactions
R8819 T13648 T13649 amod extrapolated,interactions
R8820 T13649 T13643 conj interactions,interactions
R8821 T13650 T13649 acl defined,interactions
R8822 T13651 T13650 agent by,defined
R8823 T13652 T13651 punct [,by
R8824 T13653 T13651 pobj 28,by
R8825 T13654 T13651 punct ],by
R8826 T13655 T13634 punct .,shows
R8827 T13657 T13658 punct (,B
R8828 T13658 T13659 meta B,binds
R8829 T13660 T13658 punct ),B
R8830 T13661 T13659 punct : ,binds
R8831 T13662 T13659 advcl Using,binds
R8832 T13663 T13664 det the,database
R8833 T13664 T13662 dobj database,Using
R8834 T13665 T13664 compound BIND,database
R8835 T13666 T13667 punct [,29
R8836 T13667 T13662 parataxis 29,Using
R8837 T13668 T13667 punct ],29
R8838 T13669 T13659 punct ", ",binds
R8839 T13670 T13659 nsubj DTACC,binds
R8840 T13671 T13659 advmod directly,binds
R8841 T13672 T13659 prep to,binds
R8842 T13673 T13672 pobj TBPH,to
R8843 T13674 T13673 cc and,TBPH
R8844 T13675 T13673 conj CG14540,TBPH
R8845 T13676 T13659 punct ", ",binds
R8846 T13677 T13659 cc and,binds
R8847 T13678 T13659 conj thus,binds
R8848 T13679 T13678 advmod indirectly,thus
R8849 T13680 T13678 prep to,thus
R8850 T13681 T13682 compound chromatin,remodeling
R8851 T13682 T13683 compound remodeling,complexes
R8852 T13683 T13680 pobj complexes,to
R8853 T13684 T13683 punct (,complexes
R8854 T13685 T13686 compound SWI,SNF
R8855 T13686 T13683 appos SNF,complexes
R8856 T13687 T13686 punct /,SNF
R8857 T13688 T13686 cc and,SNF
R8858 T13689 T13690 compound histone,acetyltransferases
R8859 T13690 T13686 conj acetyltransferases,SNF
R8860 T13691 T13683 punct ),complexes
R8861 T13692 T13683 punct ", ",complexes
R8862 T13693 T13694 compound DNA,damage
R8863 T13694 T13695 compound damage,repair
R8864 T13695 T13696 compound repair,machinery
R8865 T13696 T13683 conj machinery,complexes
R8866 T13697 T13696 punct (,machinery
R8867 T13698 T13696 prep via,machinery
R8868 T13699 T13698 pobj RAD23,via
R8869 T13700 T13696 punct ),machinery
R8870 T13701 T13696 punct ", ",machinery
R8871 T13702 T13696 cc and,machinery
R8872 T13703 T13704 nmod RNA,splicing
R8873 T13704 T13705 nmod splicing,machinery
R8874 T13705 T13696 conj machinery,machinery
R8875 T13706 T13704 punct ", ",splicing
R8876 T13707 T13704 conj transport,splicing
R8877 T13708 T13707 cc and,transport
R8878 T13709 T13707 conj translational,transport
R8879 T13710 T13659 punct .,binds
R8880 T13712 T13713 punct (,C
R8881 T13713 T13714 meta C,suggests
R8882 T13715 T13713 punct ),C
R8883 T13716 T13714 punct : ,suggests
R8884 T13717 T13718 amod Predicted,interaction
R8885 T13718 T13719 compound interaction,map
R8886 T13719 T13714 nsubj map,suggests
R8887 T13720 T13719 prep for,map
R8888 T13721 T13722 compound vertebrate,TACCs
R8889 T13722 T13720 pobj TACCs,for
R8890 T13723 T13719 punct ", ",map
R8891 T13724 T13719 prep based,map
R8892 T13725 T13724 prep upon,based
R8893 T13726 T13725 pobj ceTAC,upon
R8894 T13727 T13714 punct ", ",suggests
R8895 T13728 T13729 det an,interaction
R8896 T13729 T13714 dobj interaction,suggests
R8897 T13730 T13729 amod indirect,interaction
R8898 T13731 T13729 prep with,interaction
R8899 T13732 T13733 det the,receptor
R8900 T13733 T13731 pobj receptor,with
R8901 T13734 T13733 amod nuclear,receptor
R8902 T13735 T13733 compound hormone,receptor
R8903 T13736 T13733 appos RXRβ,receptor
R8904 T13737 T13714 punct .,suggests
R8905 T13739 T13740 nsubj It,is
R8906 T13741 T13740 advmod also,is
R8907 T13742 T13740 prep of,is
R8908 T13743 T13742 pobj interest,of
R8909 T13744 T13745 mark that,predicts
R8910 T13745 T13740 ccomp predicts,is
R8911 T13746 T13745 nsubj this,predicts
R8912 T13747 T13748 det a,interaction
R8913 T13748 T13745 dobj interaction,predicts
R8914 T13749 T13748 amod functional,interaction
R8915 T13750 T13748 prep with,interaction
R8916 T13751 T13752 det the,family
R8917 T13752 T13750 pobj family,with
R8918 T13753 T13752 compound LDB,family
R8919 T13754 T13752 punct ", ",family
R8920 T13755 T13756 dep members,found
R8921 T13756 T13752 relcl found,family
R8922 T13757 T13755 prep of,members
R8923 T13758 T13757 pobj which,of
R8924 T13759 T13756 auxpass are,found
R8925 T13760 T13756 advmod also,found
R8926 T13761 T13756 prep in,found
R8927 T13762 T13763 npadvmod TACC,containing
R8928 T13763 T13764 amod containing,segments
R8929 T13764 T13761 pobj segments,in
R8930 T13765 T13764 amod paralogous,segments
R8931 T13766 T13756 advcl noted,found
R8932 T13767 T13766 prep in,noted
R8933 T13768 T13769 nmod Figs,3
R8934 T13769 T13767 pobj 3,in
R8935 T13770 T13769 nummod 2,3
R8936 T13771 T13769 punct ", ",3
R8937 T13772 T13769 cc and,3
R8938 T13773 T13774 amod Additional,file
R8939 T13774 T13769 conj file,3
R8940 T13775 T13774 nummod 1,file
R8941 T13776 T13740 punct .,is
R8942 T13778 T13779 punct (,D
R8943 T13779 T13780 meta D,map
R8944 T13781 T13779 punct ),D
R8945 T13782 T13780 punct : ,map
R8946 T13783 T13780 amod Predicted,map
R8947 T13784 T13780 compound TACC,map
R8948 T13785 T13780 compound interaction,map
R8949 T13786 T13780 prep based,map
R8950 T13787 T13786 prep upon,based
R8951 T13788 T13787 pobj DTACC,upon
R8952 T13789 T13780 punct .,map
R8953 T13791 T13792 punct (,E
R8954 T13792 T13793 meta E,interactions
R8955 T13794 T13792 punct ),E
R8956 T13795 T13793 punct : ,interactions
R8957 T13796 T13793 compound Vertebrate,interactions
R8958 T13797 T13793 compound TACC,interactions
R8959 T13798 T13793 acl identified,interactions
R8960 T13799 T13798 prep to,identified
R8961 T13800 T13799 pobj date,to
R8962 T13801 T13793 punct .,interactions
R8963 T13803 T13804 nsubj ?,denotes
R8964 T13805 T13804 dobj uncertainty,denotes
R8965 T13806 T13805 prep over,uncertainty
R8966 T13807 T13808 det the,identity
R8967 T13808 T13806 pobj identity,over
R8968 T13809 T13808 prep of,identity
R8969 T13810 T13811 det a,homologue
R8970 T13811 T13809 pobj homologue,of
R8971 T13812 T13811 amod functional,homologue
R8972 T13813 T13811 compound vertebrate,homologue
R8973 T13814 T13804 punct .,denotes
R8974 T13816 T13817 prep In,denotes
R8975 T13818 T13816 pobj C,In
R8976 T13819 T13818 punct ", ",C
R8977 T13820 T13818 conj D,C
R8978 T13821 T13820 cc and,D
R8979 T13822 T13820 conj E,D
R8980 T13823 T13817 punct ", ",denotes
R8981 T13824 T13825 punct ','
R8982 T13825 T13817 nsubj ',denotes
R8983 T13826 T13825 punct *,'
R8984 T13827 T13828 nummod one,members
R8985 T13828 T13817 dobj members,denotes
R8986 T13829 T13827 cc or,one
R8987 T13830 T13827 conj more,one
R8988 T13831 T13828 prep of,members
R8989 T13832 T13833 det the,family
R8990 T13833 T13831 pobj family,of
R8991 T13834 T13833 nmod TACC,family
R8992 T13835 T13834 cc or,TACC
R8993 T13836 T13837 compound Aurora,kinase
R8994 T13837 T13834 conj kinase,TACC
R8995 T13838 T13817 punct .,denotes

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13586 33-41 CHEBI_PR_EXT:protein denotes proteins
T13587 53-63 NCBITaxon:6239 denotes C. elegans
T13588 68-83 NCBITaxon:7227 denotes D. melanogaster
T13589 90-100 NCBITaxon:6239 denotes C. elegans
T13590 263-268 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T13591 313-322 GO:0000785 denotes chromatin
T13592 313-333 GO:0006338 denotes chromatin remodeling
T13593 334-343 GO:0032991 denotes complexes
T13594 345-352 GO:0016514 denotes SWI/SNF
T13595 357-364 PR_EXT:000043452 denotes histone
T13596 357-364 CHEBI:15358 denotes histone
T13597 357-383 GO_EXT:0004402 denotes histone acetyltransferases
T13598 386-389 CHEBI_SO_EXT:DNA denotes DNA
T13599 386-403 GO:0006281 denotes DNA damage repair
T13600 419-424 PR_EXT:RAD23 denotes RAD23
T13601 431-434 CHEBI_SO_EXT:RNA denotes RNA
T13602 431-443 GO:0008380 denotes RNA splicing
T13603 431-434 _FRAGMENT denotes RNA
T13604 445-454 GO:0050658 denotes transport
T13605 459-472 GO:0006412 denotes translational
T13606 519-529 NCBITaxon:7742 denotes vertebrate
T13607 597-604 GO:0005634 denotes nuclear
T13608 605-612 CHEBI_GO_EXT:hormone denotes hormone
T13609 613-621 GO_EXT:0004872 denotes receptor
T13610 622-626 PR_EXT:000014373 denotes RXRβ
T13611 767-786 SO_EXT:0000854 denotes paralogous segments
T13612 888-898 NCBITaxon:7742 denotes Vertebrate
T13613 993-1003 NCBITaxon:7742 denotes vertebrate
T13614 1004-1013 SO_EXT:0000853 denotes homologue
T13615 1077-1090 PR_EXT:000035365 denotes Aurora kinase
T13616 1084-1090 GO_EXT:0016301 denotes kinase
R8790 T13604 T13603 _lexicallyChainedTo transport,RNA

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13564 53-63 NCBITaxon:6239 denotes C. elegans
T13565 68-83 NCBITaxon:7227 denotes D. melanogaster
T13566 90-100 NCBITaxon:6239 denotes C. elegans
T13567 313-322 GO:0000785 denotes chromatin
T13568 313-333 GO:0006338 denotes chromatin remodeling
T13569 334-343 GO:0032991 denotes complexes
T13570 345-352 GO:0016514 denotes SWI/SNF
T13571 357-364 PR:000043452 denotes histone
T13572 357-364 CHEBI:15358 denotes histone
T13573 386-403 GO:0006281 denotes DNA damage repair
T13574 431-443 GO:0008380 denotes RNA splicing
T13575 431-434 _FRAGMENT denotes RNA
T13576 445-454 GO:0050658 denotes transport
T13577 459-472 GO:0006412 denotes translational
T13578 519-529 NCBITaxon:7742 denotes vertebrate
T13579 597-604 GO:0005634 denotes nuclear
T13580 622-626 PR:000014373 denotes RXRβ
T13581 767-786 SO:0000854 denotes paralogous segments
T13582 888-898 NCBITaxon:7742 denotes Vertebrate
T13583 993-1003 NCBITaxon:7742 denotes vertebrate
T13584 1004-1013 SO:0000853 denotes homologue
T13585 1077-1090 PR:000035365 denotes Aurora kinase
R8789 T13576 T13575 _lexicallyChainedTo transport,RNA