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PMC:441373 / 31796-32904 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T13814 1023-1024 . denotes .
T13815 1024-1108 sentence denotes In C, D and E, '*' denotes one or more members of the TACC or Aurora kinase family.
T13816 1025-1027 IN denotes In
T13817 1044-1051 VBZ denotes denotes
T13617 10-20 JJ denotes Functional
T13618 21-30 NN denotes evolution
T13619 31-33 IN denotes of
T13620 34-37 DT denotes the
T13621 43-51 NN denotes proteins
T13622 38-42 NN denotes TACC
T13623 52-59 VBN denotes modeled
T13624 60-62 IN denotes in
T13625 63-65 NNP denotes C.
T13626 66-73 NNP denotes elegans
T13627 74-77 CC denotes and
T13628 78-80 NNP denotes D.
T13629 81-93 NNP denotes melanogaster
T13630 93-94 . denotes .
T13631 94-222 sentence denotes (A). C. elegans interaction map shows empirically defined interactions of ceTAC, and extrapolated interactions defined by [28].
T13632 95-96 -LRB- denotes (
T13633 96-97 LS denotes A
T13634 127-132 VBZ denotes shows
T13635 97-98 -RRB- denotes )
T13636 98-99 . denotes .
T13637 100-102 NNP denotes C.
T13638 103-110 NNP denotes elegans
T13639 123-126 NN denotes map
T13640 111-122 NN denotes interaction
T13641 133-144 RB denotes empirically
T13642 145-152 VBN denotes defined
T13643 153-165 NNS denotes interactions
T13644 166-168 IN denotes of
T13645 169-174 NN denotes ceTAC
T13646 174-176 , denotes ,
T13647 176-179 CC denotes and
T13648 180-192 VBN denotes extrapolated
T13649 193-205 NNS denotes interactions
T13650 206-213 VBN denotes defined
T13651 214-216 IN denotes by
T13652 217-218 -LRB- denotes [
T13653 218-220 CD denotes 28
T13654 220-221 -RRB- denotes ]
T13655 221-222 . denotes .
T13656 222-493 sentence denotes (B): Using the BIND database [29], DTACC directly binds to TBPH and CG14540, and thus indirectly to chromatin remodeling complexes (SWI/SNF and histone acetyltransferases), DNA damage repair machinery (via RAD23), and RNA splicing, transport and translational machinery.
T13657 223-224 -LRB- denotes (
T13658 224-225 LS denotes B
T13659 273-278 VBZ denotes binds
T13660 225-226 -RRB- denotes )
T13661 226-228 : denotes :
T13662 228-233 VBG denotes Using
T13663 234-237 DT denotes the
T13664 243-251 NN denotes database
T13665 238-242 NNP denotes BIND
T13666 252-253 -LRB- denotes [
T13667 253-255 CD denotes 29
T13668 255-256 -RRB- denotes ]
T13669 256-258 , denotes ,
T13670 258-263 NN denotes DTACC
T13671 264-272 RB denotes directly
T13672 279-281 IN denotes to
T13673 282-286 NN denotes TBPH
T13674 287-290 CC denotes and
T13675 291-298 NN denotes CG14540
T13676 298-300 , denotes ,
T13677 300-303 CC denotes and
T13678 304-308 RB denotes thus
T13679 309-319 RB denotes indirectly
T13680 320-322 IN denotes to
T13681 323-332 NN denotes chromatin
T13682 333-343 NN denotes remodeling
T13683 344-353 NNS denotes complexes
T13684 354-355 -LRB- denotes (
T13685 355-358 NN denotes SWI
T13686 359-362 NN denotes SNF
T13687 358-359 HYPH denotes /
T13688 363-366 CC denotes and
T13689 367-374 NN denotes histone
T13690 375-393 NNS denotes acetyltransferases
T13691 393-394 -RRB- denotes )
T13692 394-396 , denotes ,
T13693 396-399 NN denotes DNA
T13694 400-406 NN denotes damage
T13695 407-413 NN denotes repair
T13696 414-423 NN denotes machinery
T13697 424-425 -LRB- denotes (
T13698 425-428 IN denotes via
T13699 429-434 NN denotes RAD23
T13700 434-435 -RRB- denotes )
T13701 435-437 , denotes ,
T13702 437-440 CC denotes and
T13703 441-444 NN denotes RNA
T13704 445-453 NN denotes splicing
T13705 483-492 NN denotes machinery
T13706 453-455 , denotes ,
T13707 455-464 NN denotes transport
T13708 465-468 CC denotes and
T13709 469-482 JJ denotes translational
T13710 492-493 . denotes .
T13711 493-637 sentence denotes (C): Predicted interaction map for vertebrate TACCs, based upon ceTAC, suggests an indirect interaction with the nuclear hormone receptor RXRβ.
T13712 494-495 -LRB- denotes (
T13713 495-496 LS denotes C
T13714 565-573 VBZ denotes suggests
T13715 496-497 -RRB- denotes )
T13716 497-499 : denotes :
T13717 499-508 VBN denotes Predicted
T13718 509-520 NN denotes interaction
T13719 521-524 NN denotes map
T13720 525-528 IN denotes for
T13721 529-539 NN denotes vertebrate
T13722 540-545 NNS denotes TACCs
T13723 545-547 , denotes ,
T13724 547-552 VBN denotes based
T13725 553-557 IN denotes upon
T13726 558-563 NN denotes ceTAC
T13727 563-565 , denotes ,
T13728 574-576 DT denotes an
T13729 586-597 NN denotes interaction
T13730 577-585 JJ denotes indirect
T13731 598-602 IN denotes with
T13732 603-606 DT denotes the
T13733 623-631 NN denotes receptor
T13734 607-614 JJ denotes nuclear
T13735 615-622 NN denotes hormone
T13736 632-636 NN denotes RXRβ
T13737 636-637 . denotes .
T13738 637-838 sentence denotes It is also of interest that this predicts a functional interaction with the LDB family, members of which are also found in TACC containing paralogous segments noted in Figs 2, 3 and Additional file 1.
T13739 638-640 PRP denotes It
T13740 641-643 VBZ denotes is
T13741 644-648 RB denotes also
T13742 649-651 IN denotes of
T13743 652-660 NN denotes interest
T13744 661-665 IN denotes that
T13745 671-679 VBZ denotes predicts
T13746 666-670 DT denotes this
T13747 680-681 DT denotes a
T13748 693-704 NN denotes interaction
T13749 682-692 JJ denotes functional
T13750 705-709 IN denotes with
T13751 710-713 DT denotes the
T13752 718-724 NN denotes family
T13753 714-717 NN denotes LDB
T13754 724-726 , denotes ,
T13755 726-733 NNS denotes members
T13756 752-757 VBN denotes found
T13757 734-736 IN denotes of
T13758 737-742 WDT denotes which
T13759 743-746 VBP denotes are
T13760 747-751 RB denotes also
T13761 758-760 IN denotes in
T13762 761-765 NN denotes TACC
T13763 766-776 VBG denotes containing
T13764 788-796 NNS denotes segments
T13765 777-787 JJ denotes paralogous
T13766 797-802 VBN denotes noted
T13767 803-805 IN denotes in
T13768 806-810 NNS denotes Figs
T13769 814-815 CD denotes 3
T13770 811-812 CD denotes 2
T13771 812-814 , denotes ,
T13772 816-819 CC denotes and
T13773 820-830 JJ denotes Additional
T13774 831-835 NN denotes file
T13775 836-837 CD denotes 1
T13776 837-838 . denotes .
T13777 838-892 sentence denotes (D): Predicted TACC interaction map based upon DTACC.
T13778 839-840 -LRB- denotes (
T13779 840-841 LS denotes D
T13780 871-874 NN denotes map
T13781 841-842 -RRB- denotes )
T13782 842-844 : denotes :
T13783 844-853 VBN denotes Predicted
T13784 854-858 NN denotes TACC
T13785 859-870 NN denotes interaction
T13786 875-880 VBN denotes based
T13787 881-885 IN denotes upon
T13788 886-891 NN denotes DTACC
T13789 891-892 . denotes .
T13790 892-946 sentence denotes (E): Vertebrate TACC interactions identified to date.
T13791 893-894 -LRB- denotes (
T13792 894-895 LS denotes E
T13793 914-926 NNS denotes interactions
T13794 895-896 -RRB- denotes )
T13795 896-898 : denotes :
T13796 898-908 NN denotes Vertebrate
T13797 909-913 NN denotes TACC
T13798 927-937 VBN denotes identified
T13799 938-940 IN denotes to
T13800 941-945 NN denotes date
T13801 945-946 . denotes .
T13802 946-1024 sentence denotes ? denotes uncertainty over the identity of a functional vertebrate homologue.
T13803 947-948 SYM denotes ?
T13804 949-956 VBZ denotes denotes
T13805 957-968 NN denotes uncertainty
T13806 969-973 IN denotes over
T13807 974-977 DT denotes the
T13808 978-986 NN denotes identity
T13809 987-989 IN denotes of
T13810 990-991 DT denotes a
T13811 1014-1023 NN denotes homologue
T13812 992-1002 JJ denotes functional
T13813 1003-1013 NN denotes vertebrate
T13818 1028-1029 NN denotes C
T13819 1029-1031 , denotes ,
T13820 1031-1032 NN denotes D
T13821 1033-1036 CC denotes and
T13822 1037-1038 NN denotes E
T13823 1038-1040 , denotes ,
T13824 1040-1041 `` denotes '
T13825 1042-1043 '' denotes '
T13826 1041-1042 SYM denotes *
T13827 1052-1055 CD denotes one
T13828 1064-1071 NNS denotes members
T13829 1056-1058 CC denotes or
T13830 1059-1063 JJR denotes more
T13831 1072-1074 IN denotes of
T13832 1075-1078 DT denotes the
T13833 1101-1107 NN denotes family
T13834 1079-1083 NN denotes TACC
T13835 1084-1086 CC denotes or
T13836 1087-1093 NN denotes Aurora
T13837 1094-1100 NN denotes kinase
T13838 1107-1108 . denotes .
R8791 T13617 T13618 amod Functional,evolution
R8792 T13619 T13618 prep of,evolution
R8793 T13620 T13621 det the,proteins
R8794 T13621 T13619 pobj proteins,of
R8795 T13622 T13621 compound TACC,proteins
R8796 T13623 T13618 acl modeled,evolution
R8797 T13624 T13623 prep in,modeled
R8798 T13625 T13626 compound C.,elegans
R8799 T13626 T13624 pobj elegans,in
R8800 T13627 T13626 cc and,elegans
R8801 T13628 T13629 compound D.,melanogaster
R8802 T13629 T13626 conj melanogaster,elegans
R8803 T13630 T13618 punct .,evolution
R8804 T13632 T13633 punct (,A
R8805 T13633 T13634 meta A,shows
R8806 T13635 T13633 punct ),A
R8807 T13636 T13633 punct .,A
R8808 T13637 T13638 compound C.,elegans
R8809 T13638 T13639 compound elegans,map
R8810 T13639 T13634 nsubj map,shows
R8811 T13640 T13639 compound interaction,map
R8812 T13641 T13642 advmod empirically,defined
R8813 T13642 T13643 amod defined,interactions
R8814 T13643 T13634 dobj interactions,shows
R8815 T13644 T13643 prep of,interactions
R8816 T13645 T13644 pobj ceTAC,of
R8817 T13646 T13643 punct ", ",interactions
R8818 T13647 T13643 cc and,interactions
R8819 T13648 T13649 amod extrapolated,interactions
R8820 T13649 T13643 conj interactions,interactions
R8821 T13650 T13649 acl defined,interactions
R8822 T13651 T13650 agent by,defined
R8823 T13652 T13651 punct [,by
R8824 T13653 T13651 pobj 28,by
R8825 T13654 T13651 punct ],by
R8826 T13655 T13634 punct .,shows
R8827 T13657 T13658 punct (,B
R8828 T13658 T13659 meta B,binds
R8829 T13660 T13658 punct ),B
R8830 T13661 T13659 punct : ,binds
R8831 T13662 T13659 advcl Using,binds
R8832 T13663 T13664 det the,database
R8833 T13664 T13662 dobj database,Using
R8834 T13665 T13664 compound BIND,database
R8835 T13666 T13667 punct [,29
R8836 T13667 T13662 parataxis 29,Using
R8837 T13668 T13667 punct ],29
R8838 T13669 T13659 punct ", ",binds
R8839 T13670 T13659 nsubj DTACC,binds
R8840 T13671 T13659 advmod directly,binds
R8841 T13672 T13659 prep to,binds
R8842 T13673 T13672 pobj TBPH,to
R8843 T13674 T13673 cc and,TBPH
R8844 T13675 T13673 conj CG14540,TBPH
R8845 T13676 T13659 punct ", ",binds
R8846 T13677 T13659 cc and,binds
R8847 T13678 T13659 conj thus,binds
R8848 T13679 T13678 advmod indirectly,thus
R8849 T13680 T13678 prep to,thus
R8850 T13681 T13682 compound chromatin,remodeling
R8851 T13682 T13683 compound remodeling,complexes
R8852 T13683 T13680 pobj complexes,to
R8853 T13684 T13683 punct (,complexes
R8854 T13685 T13686 compound SWI,SNF
R8855 T13686 T13683 appos SNF,complexes
R8856 T13687 T13686 punct /,SNF
R8857 T13688 T13686 cc and,SNF
R8858 T13689 T13690 compound histone,acetyltransferases
R8859 T13690 T13686 conj acetyltransferases,SNF
R8860 T13691 T13683 punct ),complexes
R8861 T13692 T13683 punct ", ",complexes
R8862 T13693 T13694 compound DNA,damage
R8863 T13694 T13695 compound damage,repair
R8864 T13695 T13696 compound repair,machinery
R8865 T13696 T13683 conj machinery,complexes
R8866 T13697 T13696 punct (,machinery
R8867 T13698 T13696 prep via,machinery
R8868 T13699 T13698 pobj RAD23,via
R8869 T13700 T13696 punct ),machinery
R8870 T13701 T13696 punct ", ",machinery
R8871 T13702 T13696 cc and,machinery
R8872 T13703 T13704 nmod RNA,splicing
R8873 T13704 T13705 nmod splicing,machinery
R8874 T13705 T13696 conj machinery,machinery
R8875 T13706 T13704 punct ", ",splicing
R8876 T13707 T13704 conj transport,splicing
R8877 T13708 T13707 cc and,transport
R8878 T13709 T13707 conj translational,transport
R8879 T13710 T13659 punct .,binds
R8880 T13712 T13713 punct (,C
R8881 T13713 T13714 meta C,suggests
R8882 T13715 T13713 punct ),C
R8883 T13716 T13714 punct : ,suggests
R8884 T13717 T13718 amod Predicted,interaction
R8885 T13718 T13719 compound interaction,map
R8886 T13719 T13714 nsubj map,suggests
R8887 T13720 T13719 prep for,map
R8888 T13721 T13722 compound vertebrate,TACCs
R8889 T13722 T13720 pobj TACCs,for
R8890 T13723 T13719 punct ", ",map
R8891 T13724 T13719 prep based,map
R8892 T13725 T13724 prep upon,based
R8893 T13726 T13725 pobj ceTAC,upon
R8894 T13727 T13714 punct ", ",suggests
R8895 T13728 T13729 det an,interaction
R8896 T13729 T13714 dobj interaction,suggests
R8897 T13730 T13729 amod indirect,interaction
R8898 T13731 T13729 prep with,interaction
R8899 T13732 T13733 det the,receptor
R8900 T13733 T13731 pobj receptor,with
R8901 T13734 T13733 amod nuclear,receptor
R8902 T13735 T13733 compound hormone,receptor
R8903 T13736 T13733 appos RXRβ,receptor
R8904 T13737 T13714 punct .,suggests
R8905 T13739 T13740 nsubj It,is
R8906 T13741 T13740 advmod also,is
R8907 T13742 T13740 prep of,is
R8908 T13743 T13742 pobj interest,of
R8909 T13744 T13745 mark that,predicts
R8910 T13745 T13740 ccomp predicts,is
R8911 T13746 T13745 nsubj this,predicts
R8912 T13747 T13748 det a,interaction
R8913 T13748 T13745 dobj interaction,predicts
R8914 T13749 T13748 amod functional,interaction
R8915 T13750 T13748 prep with,interaction
R8916 T13751 T13752 det the,family
R8917 T13752 T13750 pobj family,with
R8918 T13753 T13752 compound LDB,family
R8919 T13754 T13752 punct ", ",family
R8920 T13755 T13756 dep members,found
R8921 T13756 T13752 relcl found,family
R8922 T13757 T13755 prep of,members
R8923 T13758 T13757 pobj which,of
R8924 T13759 T13756 auxpass are,found
R8925 T13760 T13756 advmod also,found
R8926 T13761 T13756 prep in,found
R8927 T13762 T13763 npadvmod TACC,containing
R8928 T13763 T13764 amod containing,segments
R8929 T13764 T13761 pobj segments,in
R8930 T13765 T13764 amod paralogous,segments
R8931 T13766 T13756 advcl noted,found
R8932 T13767 T13766 prep in,noted
R8933 T13768 T13769 nmod Figs,3
R8934 T13769 T13767 pobj 3,in
R8935 T13770 T13769 nummod 2,3
R8936 T13771 T13769 punct ", ",3
R8937 T13772 T13769 cc and,3
R8938 T13773 T13774 amod Additional,file
R8939 T13774 T13769 conj file,3
R8940 T13775 T13774 nummod 1,file
R8941 T13776 T13740 punct .,is
R8942 T13778 T13779 punct (,D
R8943 T13779 T13780 meta D,map
R8944 T13781 T13779 punct ),D
R8945 T13782 T13780 punct : ,map
R8946 T13783 T13780 amod Predicted,map
R8947 T13784 T13780 compound TACC,map
R8948 T13785 T13780 compound interaction,map
R8949 T13786 T13780 prep based,map
R8950 T13787 T13786 prep upon,based
R8951 T13788 T13787 pobj DTACC,upon
R8952 T13789 T13780 punct .,map
R8953 T13791 T13792 punct (,E
R8954 T13792 T13793 meta E,interactions
R8955 T13794 T13792 punct ),E
R8956 T13795 T13793 punct : ,interactions
R8957 T13796 T13793 compound Vertebrate,interactions
R8958 T13797 T13793 compound TACC,interactions
R8959 T13798 T13793 acl identified,interactions
R8960 T13799 T13798 prep to,identified
R8961 T13800 T13799 pobj date,to
R8962 T13801 T13793 punct .,interactions
R8963 T13803 T13804 nsubj ?,denotes
R8964 T13805 T13804 dobj uncertainty,denotes
R8965 T13806 T13805 prep over,uncertainty
R8966 T13807 T13808 det the,identity
R8967 T13808 T13806 pobj identity,over
R8968 T13809 T13808 prep of,identity
R8969 T13810 T13811 det a,homologue
R8970 T13811 T13809 pobj homologue,of
R8971 T13812 T13811 amod functional,homologue
R8972 T13813 T13811 compound vertebrate,homologue
R8973 T13814 T13804 punct .,denotes
R8974 T13816 T13817 prep In,denotes
R8975 T13818 T13816 pobj C,In
R8976 T13819 T13818 punct ", ",C
R8977 T13820 T13818 conj D,C
R8978 T13821 T13820 cc and,D
R8979 T13822 T13820 conj E,D
R8980 T13823 T13817 punct ", ",denotes
R8981 T13824 T13825 punct ','
R8982 T13825 T13817 nsubj ',denotes
R8983 T13826 T13825 punct *,'
R8984 T13827 T13828 nummod one,members
R8985 T13828 T13817 dobj members,denotes
R8986 T13829 T13827 cc or,one
R8987 T13830 T13827 conj more,one
R8988 T13831 T13828 prep of,members
R8989 T13832 T13833 det the,family
R8990 T13833 T13831 pobj family,of
R8991 T13834 T13833 nmod TACC,family
R8992 T13835 T13834 cc or,TACC
R8993 T13836 T13837 compound Aurora,kinase
R8994 T13837 T13834 conj kinase,TACC
R8995 T13838 T13817 punct .,denotes

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13586 43-51 CHEBI_PR_EXT:protein denotes proteins
T13587 63-73 NCBITaxon:6239 denotes C. elegans
T13588 78-93 NCBITaxon:7227 denotes D. melanogaster
T13589 100-110 NCBITaxon:6239 denotes C. elegans
T13590 273-278 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T13591 323-332 GO:0000785 denotes chromatin
T13592 323-343 GO:0006338 denotes chromatin remodeling
T13593 344-353 GO:0032991 denotes complexes
T13594 355-362 GO:0016514 denotes SWI/SNF
T13595 367-374 PR_EXT:000043452 denotes histone
T13596 367-374 CHEBI:15358 denotes histone
T13597 367-393 GO_EXT:0004402 denotes histone acetyltransferases
T13598 396-399 CHEBI_SO_EXT:DNA denotes DNA
T13599 396-413 GO:0006281 denotes DNA damage repair
T13600 429-434 PR_EXT:RAD23 denotes RAD23
T13601 441-444 CHEBI_SO_EXT:RNA denotes RNA
T13602 441-453 GO:0008380 denotes RNA splicing
T13603 441-444 _FRAGMENT denotes RNA
T13604 455-464 GO:0050658 denotes transport
T13605 469-482 GO:0006412 denotes translational
T13606 529-539 NCBITaxon:7742 denotes vertebrate
T13607 607-614 GO:0005634 denotes nuclear
T13608 615-622 CHEBI_GO_EXT:hormone denotes hormone
T13609 623-631 GO_EXT:0004872 denotes receptor
T13610 632-636 PR_EXT:000014373 denotes RXRβ
T13611 777-796 SO_EXT:0000854 denotes paralogous segments
T13612 898-908 NCBITaxon:7742 denotes Vertebrate
T13613 1003-1013 NCBITaxon:7742 denotes vertebrate
T13614 1014-1023 SO_EXT:0000853 denotes homologue
T13615 1087-1100 PR_EXT:000035365 denotes Aurora kinase
T13616 1094-1100 GO_EXT:0016301 denotes kinase
R8790 T13604 T13603 _lexicallyChainedTo transport,RNA

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13564 63-73 NCBITaxon:6239 denotes C. elegans
T13565 78-93 NCBITaxon:7227 denotes D. melanogaster
T13566 100-110 NCBITaxon:6239 denotes C. elegans
T13567 323-332 GO:0000785 denotes chromatin
T13568 323-343 GO:0006338 denotes chromatin remodeling
T13569 344-353 GO:0032991 denotes complexes
T13570 355-362 GO:0016514 denotes SWI/SNF
T13571 367-374 PR:000043452 denotes histone
T13572 367-374 CHEBI:15358 denotes histone
T13573 396-413 GO:0006281 denotes DNA damage repair
T13574 441-453 GO:0008380 denotes RNA splicing
T13575 441-444 _FRAGMENT denotes RNA
T13576 455-464 GO:0050658 denotes transport
T13577 469-482 GO:0006412 denotes translational
T13578 529-539 NCBITaxon:7742 denotes vertebrate
T13579 607-614 GO:0005634 denotes nuclear
T13580 632-636 PR:000014373 denotes RXRβ
T13581 777-796 SO:0000854 denotes paralogous segments
T13582 898-908 NCBITaxon:7742 denotes Vertebrate
T13583 1003-1013 NCBITaxon:7742 denotes vertebrate
T13584 1014-1023 SO:0000853 denotes homologue
T13585 1087-1100 PR:000035365 denotes Aurora kinase
R8789 T13576 T13575 _lexicallyChainedTo transport,RNA