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PMC:441373 / 23694-25481 JSONTXT

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Id Subject Object Predicate Lexical cue
T5846 0-2 IN denotes Of
T5847 55-59 VBP denotes show
T5848 3-6 DT denotes the
T5849 23-31 NN denotes proteins
T5850 7-17 NN denotes vertebrate
T5851 18-22 NN denotes TACC
T5852 31-33 , denotes ,
T5853 33-36 DT denotes the
T5854 43-54 NNS denotes orthologues
T5855 37-42 NN denotes TACC3
T5856 60-63 DT denotes the
T5857 73-84 NN denotes variability
T5858 64-72 JJS denotes greatest
T5859 85-87 IN denotes in
T5860 88-92 NN denotes size
T5861 93-96 CC denotes and
T5862 97-105 NN denotes sequence
T5863 105-107 , denotes ,
T5864 107-114 VBG denotes ranging
T5865 115-117 IN denotes in
T5866 118-122 NN denotes size
T5867 123-127 IN denotes from
T5868 128-131 CD denotes 599
T5869 138-143 NNS denotes acids
T5870 132-137 NN denotes amino
T5871 144-147 IN denotes for
T5872 148-151 DT denotes the
T5873 162-169 NN denotes protein
T5874 152-155 NN denotes rat
T5875 156-161 NN denotes TACC3
T5876 169-171 , denotes ,
T5877 171-173 IN denotes to
T5878 174-177 CD denotes 942
T5879 184-189 NNS denotes acids
T5880 178-183 NN denotes amino
T5881 190-192 IN denotes in
T5882 193-196 DT denotes the
T5883 209-216 NN denotes protein
T5884 197-202 NNP denotes Danio
T5885 203-208 NNP denotes rerio
T5886 216-217 . denotes .
T5887 217-317 sentence denotes The reasons for these differences are apparent from the genomic structure of the TACC3 orthologues.
T5888 218-221 DT denotes The
T5889 222-229 NNS denotes reasons
T5890 252-255 VBP denotes are
T5891 230-233 IN denotes for
T5892 234-239 DT denotes these
T5893 240-251 NNS denotes differences
T5894 256-264 JJ denotes apparent
T5895 265-269 IN denotes from
T5896 270-273 DT denotes the
T5897 282-291 NN denotes structure
T5898 274-281 JJ denotes genomic
T5899 292-294 IN denotes of
T5900 295-298 DT denotes the
T5901 305-316 NNS denotes orthologues
T5902 299-304 NN denotes TACC3
T5903 316-317 . denotes .
T5904 317-576 sentence denotes TACC3 can be divided into three sections: a conserved N-terminal region (CNTR) of 108 amino acids, encoded by exons 2 and 3 in each vertebrate TACC3 gene, the conserved TACC domain distributed over the final seven exons, and a highly variable central region.
T5905 318-323 NN denotes TACC3
T5906 331-338 VBN denotes divided
T5907 324-327 MD denotes can
T5908 328-330 VB denotes be
T5909 339-343 IN denotes into
T5910 344-349 CD denotes three
T5911 350-358 NNS denotes sections
T5912 358-360 : denotes :
T5913 360-361 DT denotes a
T5914 383-389 NN denotes region
T5915 362-371 VBN denotes conserved
T5916 372-373 NN denotes N
T5917 374-382 JJ denotes terminal
T5918 373-374 HYPH denotes -
T5919 390-391 -LRB- denotes (
T5920 391-395 NN denotes CNTR
T5921 395-396 -RRB- denotes )
T5922 397-399 IN denotes of
T5923 400-403 CD denotes 108
T5924 410-415 NNS denotes acids
T5925 404-409 NN denotes amino
T5926 415-417 , denotes ,
T5927 417-424 VBN denotes encoded
T5928 425-427 IN denotes by
T5929 428-433 NNS denotes exons
T5930 434-435 CD denotes 2
T5931 436-439 CC denotes and
T5932 440-441 CD denotes 3
T5933 442-444 IN denotes in
T5934 445-449 DT denotes each
T5935 467-471 NN denotes gene
T5936 450-460 NN denotes vertebrate
T5937 461-466 NN denotes TACC3
T5938 471-473 , denotes ,
T5939 473-476 DT denotes the
T5940 492-498 NN denotes domain
T5941 477-486 VBN denotes conserved
T5942 487-491 NN denotes TACC
T5943 499-510 VBN denotes distributed
T5944 511-515 IN denotes over
T5945 516-519 DT denotes the
T5946 532-537 NNS denotes exons
T5947 520-525 JJ denotes final
T5948 526-531 CD denotes seven
T5949 537-539 , denotes ,
T5950 539-542 CC denotes and
T5951 543-544 DT denotes a
T5952 569-575 NN denotes region
T5953 545-551 RB denotes highly
T5954 552-560 JJ denotes variable
T5955 561-568 JJ denotes central
T5956 575-576 . denotes .
T5957 576-791 sentence denotes The lack of conservation in both size and sequence of the central portion of the TACC3 proteins of human and mouse has been previously noted, and accounts for the major difference between these two orthologues [2].
T5958 577-580 DT denotes The
T5959 581-585 NN denotes lack
T5960 712-717 VBN denotes noted
T5961 586-588 IN denotes of
T5962 589-601 NN denotes conservation
T5963 602-604 IN denotes in
T5964 605-609 CC denotes both
T5965 610-614 NN denotes size
T5966 615-618 CC denotes and
T5967 619-627 NN denotes sequence
T5968 628-630 IN denotes of
T5969 631-634 DT denotes the
T5970 643-650 NN denotes portion
T5971 635-642 JJ denotes central
T5972 651-653 IN denotes of
T5973 654-657 DT denotes the
T5974 664-672 NN denotes proteins
T5975 658-663 NN denotes TACC3
T5976 673-675 IN denotes of
T5977 676-681 JJ denotes human
T5978 686-691 NN denotes mouse
T5979 682-685 CC denotes and
T5980 692-695 VBZ denotes has
T5981 696-700 VBN denotes been
T5982 701-711 RB denotes previously
T5983 717-719 , denotes ,
T5984 719-722 CC denotes and
T5985 723-731 VBZ denotes accounts
T5986 732-735 IN denotes for
T5987 736-739 DT denotes the
T5988 746-756 NN denotes difference
T5989 740-745 JJ denotes major
T5990 757-764 IN denotes between
T5991 765-770 DT denotes these
T5992 775-786 NNS denotes orthologues
T5993 771-774 CD denotes two
T5994 787-788 -LRB- denotes [
T5995 788-789 CD denotes 2
T5996 789-790 -RRB- denotes ]
T5997 790-791 . denotes .
T5998 791-938 sentence denotes The majority of this central portion, which contains the SDP repeat motifs, is encoded by one exon in human and the pufferfish (emb|CAAB01001184).
T5999 792-795 DT denotes The
T6000 796-804 NN denotes majority
T6001 871-878 VBN denotes encoded
T6002 805-807 IN denotes of
T6003 808-812 DT denotes this
T6004 821-828 NN denotes portion
T6005 813-820 JJ denotes central
T6006 828-830 , denotes ,
T6007 830-835 WDT denotes which
T6008 836-844 VBZ denotes contains
T6009 845-848 DT denotes the
T6010 860-866 NNS denotes motifs
T6011 849-852 NN denotes SDP
T6012 853-859 NN denotes repeat
T6013 866-868 , denotes ,
T6014 868-870 VBZ denotes is
T6015 879-881 IN denotes by
T6016 882-885 CD denotes one
T6017 886-890 NN denotes exon
T6018 891-893 IN denotes in
T6019 894-899 JJ denotes human
T6020 900-903 CC denotes and
T6021 904-907 DT denotes the
T6022 908-918 NN denotes pufferfish
T6023 919-920 -LRB- denotes (
T6024 920-936 NN denotes emb|CAAB01001184
T6025 936-937 -RRB- denotes )
T6026 937-938 . denotes .
T6027 938-1100 sentence denotes In rodents, however, this region is almost entirely composed of seven 24 amino acid repeats, which are located in a single exon of the mouse and rat TACC3 genes.
T6028 939-941 IN denotes In
T6029 991-999 VBN denotes composed
T6030 942-949 NNS denotes rodents
T6031 949-951 , denotes ,
T6032 951-958 RB denotes however
T6033 958-960 , denotes ,
T6034 960-964 DT denotes this
T6035 965-971 NN denotes region
T6036 972-974 VBZ denotes is
T6037 975-981 RB denotes almost
T6038 982-990 RB denotes entirely
T6039 1000-1002 IN denotes of
T6040 1003-1008 CD denotes seven
T6041 1023-1030 NNS denotes repeats
T6042 1009-1011 CD denotes 24
T6043 1018-1022 NN denotes acid
T6044 1012-1017 NN denotes amino
T6045 1030-1032 , denotes ,
T6046 1032-1037 WDT denotes which
T6047 1042-1049 VBN denotes located
T6048 1038-1041 VBP denotes are
T6049 1050-1052 IN denotes in
T6050 1053-1054 DT denotes a
T6051 1062-1066 NN denotes exon
T6052 1055-1061 JJ denotes single
T6053 1067-1069 IN denotes of
T6054 1070-1073 DT denotes the
T6055 1094-1099 NNS denotes genes
T6056 1074-1079 NN denotes mouse
T6057 1080-1083 CC denotes and
T6058 1084-1087 NN denotes rat
T6059 1088-1093 NN denotes TACC3
T6060 1099-1100 . denotes .
T6061 1100-1233 sentence denotes It has been previously reported that there are four mouse TACC3 splice variants that differ in the number of these repeats [2,7,17].
T6062 1101-1103 PRP denotes It
T6063 1124-1132 VBN denotes reported
T6064 1104-1107 VBZ denotes has
T6065 1108-1112 VBN denotes been
T6066 1113-1123 RB denotes previously
T6067 1133-1137 IN denotes that
T6068 1144-1147 VBP denotes are
T6069 1138-1143 EX denotes there
T6070 1148-1152 CD denotes four
T6071 1172-1180 NNS denotes variants
T6072 1153-1158 NN denotes mouse
T6073 1159-1164 NN denotes TACC3
T6074 1165-1171 NN denotes splice
T6075 1181-1185 WDT denotes that
T6076 1186-1192 VBP denotes differ
T6077 1193-1195 IN denotes in
T6078 1196-1199 DT denotes the
T6079 1200-1206 NN denotes number
T6080 1207-1209 IN denotes of
T6081 1210-1215 DT denotes these
T6082 1216-1223 NNS denotes repeats
T6083 1224-1225 -LRB- denotes [
T6084 1229-1231 CD denotes 17
T6085 1225-1226 CD denotes 2
T6086 1226-1227 , denotes ,
T6087 1227-1228 CD denotes 7
T6088 1228-1229 , denotes ,
T6089 1231-1232 -RRB- denotes ]
T6090 1232-1233 . denotes .
T6091 1233-1454 sentence denotes As these repeats are present in a single exon, it appears likely that these different sequences may be the result of the DNA polymerases used in the cDNA synthesis and/or PCR reaction stuttering through the repeat motif.
T6092 1234-1236 IN denotes As
T6093 1251-1254 VBP denotes are
T6094 1237-1242 DT denotes these
T6095 1243-1250 NNS denotes repeats
T6096 1284-1291 VBZ denotes appears
T6097 1255-1262 JJ denotes present
T6098 1263-1265 IN denotes in
T6099 1266-1267 DT denotes a
T6100 1275-1279 NN denotes exon
T6101 1268-1274 JJ denotes single
T6102 1279-1281 , denotes ,
T6103 1281-1283 PRP denotes it
T6104 1292-1298 JJ denotes likely
T6105 1299-1303 IN denotes that
T6106 1334-1336 VB denotes be
T6107 1304-1309 DT denotes these
T6108 1320-1329 NNS denotes sequences
T6109 1310-1319 JJ denotes different
T6110 1330-1333 MD denotes may
T6111 1337-1340 DT denotes the
T6112 1341-1347 NN denotes result
T6113 1348-1350 IN denotes of
T6114 1351-1354 DT denotes the
T6115 1359-1370 NNS denotes polymerases
T6116 1355-1358 NN denotes DNA
T6117 1371-1375 VBN denotes used
T6118 1376-1378 IN denotes in
T6119 1379-1382 DT denotes the
T6120 1388-1397 NN denotes synthesis
T6121 1383-1387 NN denotes cDNA
T6122 1398-1401 CC denotes and
T6123 1401-1402 HYPH denotes /
T6124 1402-1404 CC denotes or
T6125 1405-1408 NN denotes PCR
T6126 1409-1417 NN denotes reaction
T6127 1418-1428 VBG denotes stuttering
T6128 1429-1436 IN denotes through
T6129 1437-1440 DT denotes the
T6130 1448-1453 NN denotes motif
T6131 1441-1447 NN denotes repeat
T6132 1453-1454 . denotes .
T6133 1454-1565 sentence denotes The correct sequence, reported by Sadek et al [7], is the one used throughout the entirety of this manuscript.
T6134 1455-1458 DT denotes The
T6135 1467-1475 NN denotes sequence
T6136 1459-1466 JJ denotes correct
T6137 1506-1508 VBZ denotes is
T6138 1475-1477 , denotes ,
T6139 1477-1485 VBN denotes reported
T6140 1486-1488 IN denotes by
T6141 1489-1494 NNP denotes Sadek
T6142 1495-1497 FW denotes et
T6143 1498-1500 FW denotes al
T6144 1501-1502 -LRB- denotes [
T6145 1502-1503 CD denotes 7
T6146 1503-1504 -RRB- denotes ]
T6147 1504-1506 , denotes ,
T6148 1509-1512 DT denotes the
T6149 1513-1516 CD denotes one
T6150 1517-1521 VBN denotes used
T6151 1522-1532 IN denotes throughout
T6152 1533-1536 DT denotes the
T6153 1537-1545 NN denotes entirety
T6154 1546-1548 IN denotes of
T6155 1549-1553 DT denotes this
T6156 1554-1564 NN denotes manuscript
T6157 1564-1565 . denotes .
T6158 1565-1787 sentence denotes These repeats are not evident in the rabbit protein, or any other TACC protein, and may indicate that the rodent TACC3 has evolved distinct functions, as has already been noted for the amphibian Xenopus TACC3, maskin [8].
T6159 1566-1571 DT denotes These
T6160 1572-1579 NNS denotes repeats
T6161 1580-1583 VBP denotes are
T6162 1584-1587 RB denotes not
T6163 1588-1595 JJ denotes evident
T6164 1596-1598 IN denotes in
T6165 1599-1602 DT denotes the
T6166 1610-1617 NN denotes protein
T6167 1603-1609 NN denotes rabbit
T6168 1617-1619 , denotes ,
T6169 1619-1621 CC denotes or
T6170 1622-1625 DT denotes any
T6171 1637-1644 NN denotes protein
T6172 1626-1631 JJ denotes other
T6173 1632-1636 NN denotes TACC
T6174 1644-1646 , denotes ,
T6175 1646-1649 CC denotes and
T6176 1650-1653 MD denotes may
T6177 1654-1662 VB denotes indicate
T6178 1663-1667 IN denotes that
T6179 1689-1696 VBN denotes evolved
T6180 1668-1671 DT denotes the
T6181 1679-1684 NN denotes TACC3
T6182 1672-1678 NN denotes rodent
T6183 1685-1688 VBZ denotes has
T6184 1697-1705 JJ denotes distinct
T6185 1706-1715 NNS denotes functions
T6186 1715-1717 , denotes ,
T6187 1717-1719 IN denotes as
T6188 1737-1742 VBN denotes noted
T6189 1720-1723 VBZ denotes has
T6190 1724-1731 RB denotes already
T6191 1732-1736 VBN denotes been
T6192 1743-1746 IN denotes for
T6193 1747-1750 DT denotes the
T6194 1769-1774 NN denotes TACC3
T6195 1751-1760 JJ denotes amphibian
T6196 1761-1768 NNP denotes Xenopus
T6197 1774-1776 , denotes ,
T6198 1776-1782 NN denotes maskin
T6199 1783-1784 -LRB- denotes [
T6200 1784-1785 CD denotes 8
T6201 1785-1786 -RRB- denotes ]
T6202 1786-1787 . denotes .
R3722 T5846 T5847 prep Of,show
R3723 T5848 T5849 det the,proteins
R3724 T5849 T5846 pobj proteins,Of
R3725 T5850 T5849 compound vertebrate,proteins
R3726 T5851 T5849 compound TACC,proteins
R3727 T5852 T5847 punct ", ",show
R3728 T5853 T5854 det the,orthologues
R3729 T5854 T5847 nsubj orthologues,show
R3730 T5855 T5854 compound TACC3,orthologues
R3731 T5856 T5857 det the,variability
R3732 T5857 T5847 dobj variability,show
R3733 T5858 T5857 amod greatest,variability
R3734 T5859 T5857 prep in,variability
R3735 T5860 T5859 pobj size,in
R3736 T5861 T5860 cc and,size
R3737 T5862 T5860 conj sequence,size
R3738 T5863 T5847 punct ", ",show
R3739 T5864 T5847 advcl ranging,show
R3740 T5865 T5864 prep in,ranging
R3741 T5866 T5865 pobj size,in
R3742 T5867 T5864 prep from,ranging
R3743 T5868 T5869 nummod 599,acids
R3744 T5869 T5867 pobj acids,from
R3745 T5870 T5869 compound amino,acids
R3746 T5871 T5869 prep for,acids
R3747 T5872 T5873 det the,protein
R3748 T5873 T5871 pobj protein,for
R3749 T5874 T5873 compound rat,protein
R3750 T5875 T5873 compound TACC3,protein
R3751 T5876 T5867 punct ", ",from
R3752 T5877 T5867 prep to,from
R3753 T5878 T5879 nummod 942,acids
R3754 T5879 T5877 pobj acids,to
R3755 T5880 T5879 compound amino,acids
R3756 T5881 T5879 prep in,acids
R3757 T5882 T5883 det the,protein
R3758 T5883 T5881 pobj protein,in
R3759 T5884 T5883 compound Danio,protein
R3760 T5885 T5883 compound rerio,protein
R3761 T5886 T5847 punct .,show
R3762 T5888 T5889 det The,reasons
R3763 T5889 T5890 nsubj reasons,are
R3764 T5891 T5889 prep for,reasons
R3765 T5892 T5893 det these,differences
R3766 T5893 T5891 pobj differences,for
R3767 T5894 T5890 acomp apparent,are
R3768 T5895 T5890 prep from,are
R3769 T5896 T5897 det the,structure
R3770 T5897 T5895 pobj structure,from
R3771 T5898 T5897 amod genomic,structure
R3772 T5899 T5897 prep of,structure
R3773 T5900 T5901 det the,orthologues
R3774 T5901 T5899 pobj orthologues,of
R3775 T5902 T5901 compound TACC3,orthologues
R3776 T5903 T5890 punct .,are
R3777 T5905 T5906 nsubjpass TACC3,divided
R3778 T5907 T5906 aux can,divided
R3779 T5908 T5906 auxpass be,divided
R3780 T5909 T5906 prep into,divided
R3781 T5910 T5911 nummod three,sections
R3782 T5911 T5909 pobj sections,into
R3783 T5912 T5911 punct : ,sections
R3784 T5913 T5914 det a,region
R3785 T5914 T5911 appos region,sections
R3786 T5915 T5914 amod conserved,region
R3787 T5916 T5917 npadvmod N,terminal
R3788 T5917 T5914 amod terminal,region
R3789 T5918 T5917 punct -,terminal
R3790 T5919 T5914 punct (,region
R3791 T5920 T5914 appos CNTR,region
R3792 T5921 T5914 punct ),region
R3793 T5922 T5914 prep of,region
R3794 T5923 T5924 nummod 108,acids
R3795 T5924 T5922 pobj acids,of
R3796 T5925 T5924 compound amino,acids
R3797 T5926 T5924 punct ", ",acids
R3798 T5927 T5924 acl encoded,acids
R3799 T5928 T5927 agent by,encoded
R3800 T5929 T5930 nmod exons,2
R3801 T5930 T5928 pobj 2,by
R3802 T5931 T5930 cc and,2
R3803 T5932 T5930 conj 3,2
R3804 T5933 T5927 prep in,encoded
R3805 T5934 T5935 det each,gene
R3806 T5935 T5933 pobj gene,in
R3807 T5936 T5935 compound vertebrate,gene
R3808 T5937 T5935 compound TACC3,gene
R3809 T5938 T5914 punct ", ",region
R3810 T5939 T5940 det the,domain
R3811 T5940 T5914 conj domain,region
R3812 T5941 T5940 amod conserved,domain
R3813 T5942 T5940 compound TACC,domain
R3814 T5943 T5940 acl distributed,domain
R3815 T5944 T5943 prep over,distributed
R3816 T5945 T5946 det the,exons
R3817 T5946 T5944 pobj exons,over
R3818 T5947 T5946 amod final,exons
R3819 T5948 T5946 nummod seven,exons
R3820 T5949 T5940 punct ", ",domain
R3821 T5950 T5940 cc and,domain
R3822 T5951 T5952 det a,region
R3823 T5952 T5940 conj region,domain
R3824 T5953 T5954 advmod highly,variable
R3825 T5954 T5952 amod variable,region
R3826 T5955 T5952 amod central,region
R3827 T5956 T5906 punct .,divided
R3828 T5958 T5959 det The,lack
R3829 T5959 T5960 nsubjpass lack,noted
R3830 T5961 T5959 prep of,lack
R3831 T5962 T5961 pobj conservation,of
R3832 T5963 T5962 prep in,conservation
R3833 T5964 T5965 preconj both,size
R3834 T5965 T5963 pobj size,in
R3835 T5966 T5965 cc and,size
R3836 T5967 T5965 conj sequence,size
R3837 T5968 T5965 prep of,size
R3838 T5969 T5970 det the,portion
R3839 T5970 T5968 pobj portion,of
R3840 T5971 T5970 amod central,portion
R3841 T5972 T5970 prep of,portion
R3842 T5973 T5974 det the,proteins
R3843 T5974 T5972 pobj proteins,of
R3844 T5975 T5974 compound TACC3,proteins
R3845 T5976 T5974 prep of,proteins
R3846 T5977 T5978 amod human,mouse
R3847 T5978 T5976 pobj mouse,of
R3848 T5979 T5978 cc and,mouse
R3849 T5980 T5960 aux has,noted
R3850 T5981 T5960 auxpass been,noted
R3851 T5982 T5960 advmod previously,noted
R3852 T5983 T5960 punct ", ",noted
R3853 T5984 T5960 cc and,noted
R3854 T5985 T5960 conj accounts,noted
R3855 T5986 T5985 prep for,accounts
R3856 T5987 T5988 det the,difference
R3857 T5988 T5986 pobj difference,for
R3858 T5989 T5988 amod major,difference
R3859 T5990 T5988 prep between,difference
R3860 T5991 T5992 det these,orthologues
R3861 T5992 T5990 pobj orthologues,between
R3862 T5993 T5992 nummod two,orthologues
R3863 T5994 T5995 punct [,2
R3864 T5995 T5985 parataxis 2,accounts
R3865 T5996 T5995 punct ],2
R3866 T5997 T5960 punct .,noted
R3867 T5999 T6000 det The,majority
R3868 T6000 T6001 nsubjpass majority,encoded
R3869 T6002 T6000 prep of,majority
R3870 T6003 T6004 det this,portion
R3871 T6004 T6002 pobj portion,of
R3872 T6005 T6004 amod central,portion
R3873 T6006 T6004 punct ", ",portion
R3874 T6007 T6008 dep which,contains
R3875 T6008 T6004 relcl contains,portion
R3876 T6009 T6010 det the,motifs
R3877 T6010 T6008 dobj motifs,contains
R3878 T6011 T6010 compound SDP,motifs
R3879 T6012 T6010 compound repeat,motifs
R3880 T6013 T6001 punct ", ",encoded
R3881 T6014 T6001 auxpass is,encoded
R3882 T6015 T6001 agent by,encoded
R3883 T6016 T6017 nummod one,exon
R3884 T6017 T6015 pobj exon,by
R3885 T6018 T6001 prep in,encoded
R3886 T6019 T6018 pobj human,in
R3887 T6020 T6019 cc and,human
R3888 T6021 T6022 det the,pufferfish
R3889 T6022 T6019 conj pufferfish,human
R3890 T6023 T6024 punct (,emb|CAAB01001184
R3891 T6024 T6001 parataxis emb|CAAB01001184,encoded
R3892 T6025 T6024 punct ),emb|CAAB01001184
R3893 T6026 T6001 punct .,encoded
R3894 T6028 T6029 prep In,composed
R3895 T6030 T6028 pobj rodents,In
R3896 T6031 T6029 punct ", ",composed
R3897 T6032 T6029 advmod however,composed
R3898 T6033 T6029 punct ", ",composed
R3899 T6034 T6035 det this,region
R3900 T6035 T6029 nsubjpass region,composed
R3901 T6036 T6029 auxpass is,composed
R3902 T6037 T6038 advmod almost,entirely
R3903 T6038 T6029 advmod entirely,composed
R3904 T6039 T6029 prep of,composed
R3905 T6040 T6041 nummod seven,repeats
R3906 T6041 T6039 pobj repeats,of
R3907 T6042 T6043 nummod 24,acid
R3908 T6043 T6041 compound acid,repeats
R3909 T6044 T6043 compound amino,acid
R3910 T6045 T6041 punct ", ",repeats
R3911 T6046 T6047 dep which,located
R3912 T6047 T6041 relcl located,repeats
R3913 T6048 T6047 auxpass are,located
R3914 T6049 T6047 prep in,located
R3915 T6050 T6051 det a,exon
R3916 T6051 T6049 pobj exon,in
R3917 T6052 T6051 amod single,exon
R3918 T6053 T6051 prep of,exon
R3919 T6054 T6055 det the,genes
R3920 T6055 T6053 pobj genes,of
R3921 T6056 T6055 nmod mouse,genes
R3922 T6057 T6056 cc and,mouse
R3923 T6058 T6056 conj rat,mouse
R3924 T6059 T6055 compound TACC3,genes
R3925 T6060 T6029 punct .,composed
R3926 T6062 T6063 nsubjpass It,reported
R3927 T6064 T6063 aux has,reported
R3928 T6065 T6063 auxpass been,reported
R3929 T6066 T6063 advmod previously,reported
R3930 T6067 T6068 mark that,are
R3931 T6068 T6063 ccomp are,reported
R3932 T6069 T6068 expl there,are
R3933 T6070 T6071 nummod four,variants
R3934 T6071 T6068 attr variants,are
R3935 T6072 T6073 compound mouse,TACC3
R3936 T6073 T6071 compound TACC3,variants
R3937 T6074 T6071 compound splice,variants
R3938 T6075 T6076 dep that,differ
R3939 T6076 T6071 relcl differ,variants
R3940 T6077 T6076 prep in,differ
R3941 T6078 T6079 det the,number
R3942 T6079 T6077 pobj number,in
R3943 T6080 T6079 prep of,number
R3944 T6081 T6082 det these,repeats
R3945 T6082 T6080 pobj repeats,of
R3946 T6083 T6084 punct [,17
R3947 T6084 T6063 parataxis 17,reported
R3948 T6085 T6084 nummod 2,17
R3949 T6086 T6084 punct ",",17
R3950 T6087 T6084 nummod 7,17
R3951 T6088 T6084 punct ",",17
R3952 T6089 T6084 punct ],17
R3953 T6090 T6063 punct .,reported
R3954 T6092 T6093 mark As,are
R3955 T6093 T6096 advcl are,appears
R3956 T6094 T6095 det these,repeats
R3957 T6095 T6093 nsubj repeats,are
R3958 T6097 T6093 acomp present,are
R3959 T6098 T6093 prep in,are
R3960 T6099 T6100 det a,exon
R3961 T6100 T6098 pobj exon,in
R3962 T6101 T6100 amod single,exon
R3963 T6102 T6096 punct ", ",appears
R3964 T6103 T6096 nsubj it,appears
R3965 T6104 T6096 oprd likely,appears
R3966 T6105 T6106 mark that,be
R3967 T6106 T6096 ccomp be,appears
R3968 T6107 T6108 det these,sequences
R3969 T6108 T6106 nsubj sequences,be
R3970 T6109 T6108 amod different,sequences
R3971 T6110 T6106 aux may,be
R3972 T6111 T6112 det the,result
R3973 T6112 T6106 attr result,be
R3974 T6113 T6112 prep of,result
R3975 T6114 T6115 det the,polymerases
R3976 T6115 T6113 pobj polymerases,of
R3977 T6116 T6115 compound DNA,polymerases
R3978 T6117 T6115 acl used,polymerases
R3979 T6118 T6117 prep in,used
R3980 T6119 T6120 det the,synthesis
R3981 T6120 T6118 pobj synthesis,in
R3982 T6121 T6120 compound cDNA,synthesis
R3983 T6122 T6115 cc and,polymerases
R3984 T6123 T6122 punct /,and
R3985 T6124 T6122 cc or,and
R3986 T6125 T6126 compound PCR,reaction
R3987 T6126 T6127 nsubj reaction,stuttering
R3988 T6127 T6115 conj stuttering,polymerases
R3989 T6128 T6127 prep through,stuttering
R3990 T6129 T6130 det the,motif
R3991 T6130 T6128 pobj motif,through
R3992 T6131 T6130 compound repeat,motif
R3993 T6132 T6096 punct .,appears
R3994 T6134 T6135 det The,sequence
R3995 T6135 T6137 nsubj sequence,is
R3996 T6136 T6135 amod correct,sequence
R3997 T6138 T6135 punct ", ",sequence
R3998 T6139 T6135 acl reported,sequence
R3999 T6140 T6139 agent by,reported
R4000 T6141 T6140 pobj Sadek,by
R4001 T6142 T6143 advmod et,al
R4002 T6143 T6141 advmod al,Sadek
R4003 T6144 T6145 punct [,7
R4004 T6145 T6139 parataxis 7,reported
R4005 T6146 T6145 punct ],7
R4006 T6147 T6137 punct ", ",is
R4007 T6148 T6149 det the,one
R4008 T6149 T6137 attr one,is
R4009 T6150 T6149 acl used,one
R4010 T6151 T6150 prep throughout,used
R4011 T6152 T6153 det the,entirety
R4012 T6153 T6151 pobj entirety,throughout
R4013 T6154 T6153 prep of,entirety
R4014 T6155 T6156 det this,manuscript
R4015 T6156 T6154 pobj manuscript,of
R4016 T6157 T6137 punct .,is
R4017 T6159 T6160 det These,repeats
R4018 T6160 T6161 nsubj repeats,are
R4019 T6162 T6161 neg not,are
R4020 T6163 T6161 acomp evident,are
R4021 T6164 T6161 prep in,are
R4022 T6165 T6166 det the,protein
R4023 T6166 T6164 pobj protein,in
R4024 T6167 T6166 compound rabbit,protein
R4025 T6168 T6166 punct ", ",protein
R4026 T6169 T6166 cc or,protein
R4027 T6170 T6171 det any,protein
R4028 T6171 T6166 conj protein,protein
R4029 T6172 T6171 amod other,protein
R4030 T6173 T6171 compound TACC,protein
R4031 T6174 T6161 punct ", ",are
R4032 T6175 T6161 cc and,are
R4033 T6176 T6177 aux may,indicate
R4034 T6177 T6161 conj indicate,are
R4035 T6178 T6179 mark that,evolved
R4036 T6179 T6177 ccomp evolved,indicate
R4037 T6180 T6181 det the,TACC3
R4038 T6181 T6179 nsubj TACC3,evolved
R4039 T6182 T6181 compound rodent,TACC3
R4040 T6183 T6179 aux has,evolved
R4041 T6184 T6185 amod distinct,functions
R4042 T6185 T6179 dobj functions,evolved
R4043 T6186 T6177 punct ", ",indicate
R4044 T6187 T6188 mark as,noted
R4045 T6188 T6177 advcl noted,indicate
R4046 T6189 T6188 aux has,noted
R4047 T6190 T6188 advmod already,noted
R4048 T6191 T6188 auxpass been,noted
R4049 T6192 T6188 prep for,noted
R4050 T6193 T6194 det the,TACC3
R4051 T6194 T6192 pobj TACC3,for
R4052 T6195 T6194 amod amphibian,TACC3
R4053 T6196 T6194 compound Xenopus,TACC3
R4054 T6197 T6194 punct ", ",TACC3
R4055 T6198 T6194 appos maskin,TACC3
R4056 T6199 T6200 punct [,8
R4057 T6200 T6188 parataxis 8,noted
R4058 T6201 T6200 punct ],8
R4059 T6202 T6161 punct .,are

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T5436 7-17 NCBITaxon:7742 denotes vertebrate
T5437 23-31 CHEBI_PR_EXT:protein denotes proteins
T5438 37-42 PR_EXT:000016008 denotes TACC3
T5439 43-54 SO_EXT:0000855 denotes orthologues
T5440 97-105 SO_EXT:biological_sequence denotes sequence
T5441 132-143 CHEBI_SO_EXT:amino_acid denotes amino acids
T5442 152-155 NCBITaxon:10114 denotes rat
T5443 156-161 PR_EXT:000016008 denotes TACC3
T5444 162-169 CHEBI_PR_EXT:protein denotes protein
T5445 178-189 CHEBI_SO_EXT:amino_acid denotes amino acids
T5446 197-208 NCBITaxon:7955 denotes Danio rerio
T5447 209-216 CHEBI_PR_EXT:protein denotes protein
T5448 274-281 SO_EXT:0001026 denotes genomic
T5449 299-304 PR_EXT:000016008 denotes TACC3
T5450 305-316 SO_EXT:0000855 denotes orthologues
T5451 318-323 PR_EXT:000016008 denotes TACC3
T5452 362-371 SO_EXT:biological_conservation_process_or_quality denotes conserved
T5453 372-382 CHEBI_SO_EXT:N_terminus_or_N_terminal_region denotes N-terminal
T5454 404-415 CHEBI_SO_EXT:amino_acid denotes amino acids
T5455 417-424 SO_EXT:sequence_coding_function denotes encoded
T5456 428-433 SO_EXT:0000147 denotes exons
T5457 450-460 NCBITaxon:7742 denotes vertebrate
T5458 461-466 PR_EXT:000016008 denotes TACC3
T5459 467-471 SO_EXT:0000704 denotes gene
T5460 477-486 SO_EXT:biological_conservation_process_or_quality denotes conserved
T5461 492-498 SO_EXT:0000417 denotes domain
T5462 532-537 SO_EXT:0000147 denotes exons
T5463 589-601 SO_EXT:biological_conservation_process_or_quality denotes conservation
T5464 619-627 SO_EXT:biological_sequence denotes sequence
T5465 658-663 PR_EXT:000016008 denotes TACC3
T5466 664-672 CHEBI_PR_EXT:protein denotes proteins
T5467 676-681 NCBITaxon:9606 denotes human
T5468 686-691 NCBITaxon:10088 denotes mouse
T5469 775-786 SO_EXT:0000855 denotes orthologues
T5470 853-859 SO_EXT:sequence_repeat_unit_or_region denotes repeat
T5471 860-866 SO_EXT:sequence_or_structure_motif denotes motifs
T5472 871-878 SO_EXT:sequence_coding_function denotes encoded
T5473 886-890 SO_EXT:0000147 denotes exon
T5474 894-899 NCBITaxon:9606 denotes human
T5475 908-918 NCBITaxon:31031 denotes pufferfish
T5476 942-949 NCBITaxon:9989 denotes rodents
T5477 1012-1022 CHEBI_SO_EXT:amino_acid denotes amino acid
T5478 1023-1030 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T5479 1062-1066 SO_EXT:0000147 denotes exon
T5480 1074-1079 NCBITaxon:10088 denotes mouse
T5481 1084-1087 NCBITaxon:10114 denotes rat
T5482 1088-1093 PR_EXT:000016008 denotes TACC3
T5483 1094-1099 SO_EXT:0000704 denotes genes
T5484 1153-1158 NCBITaxon:10088 denotes mouse
T5485 1159-1164 PR_EXT:000016008 denotes TACC3
T5486 1165-1171 GO:0008380 denotes splice
T5487 1165-1180 SO_EXT:alternative_splice_variant denotes splice variants
T5488 1216-1223 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T5489 1243-1250 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T5490 1275-1279 SO_EXT:0000147 denotes exon
T5491 1320-1329 SO_EXT:biological_sequence denotes sequences
T5492 1355-1358 CHEBI_SO_EXT:DNA denotes DNA
T5493 1355-1370 GO_EXT:0034061 denotes DNA polymerases
T5494 1383-1387 SO_EXT:cDNA denotes cDNA
T5495 1441-1447 SO_EXT:sequence_repeat_unit_or_region denotes repeat
T5496 1448-1453 SO_EXT:sequence_or_structure_motif denotes motif
T5497 1467-1475 SO_EXT:biological_sequence denotes sequence
T5498 1572-1579 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T5499 1603-1609 NCBITaxon:9986 denotes rabbit
T5500 1610-1617 CHEBI_PR_EXT:protein denotes protein
T5501 1637-1644 CHEBI_PR_EXT:protein denotes protein
T5502 1672-1678 NCBITaxon:9989 denotes rodent
T5503 1679-1684 PR_EXT:000016008 denotes TACC3
T5504 1751-1760 NCBITaxon:8292 denotes amphibian
T5505 1761-1768 NCBITaxon:8353 denotes Xenopus
T5506 1769-1774 PR_EXT:000016008 denotes TACC3

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T5322 7-17 NCBITaxon:7742 denotes vertebrate
T5323 37-42 PR:000016008 denotes TACC3
T5324 43-54 SO:0000855 denotes orthologues
T5325 152-155 NCBITaxon:10114 denotes rat
T5326 156-161 PR:000016008 denotes TACC3
T5327 197-208 NCBITaxon:7955 denotes Danio rerio
T5328 274-281 SO:0001026 denotes genomic
T5329 299-304 PR:000016008 denotes TACC3
T5330 305-316 SO:0000855 denotes orthologues
T5331 318-323 PR:000016008 denotes TACC3
T5332 428-433 SO:0000147 denotes exons
T5333 450-460 NCBITaxon:7742 denotes vertebrate
T5334 461-466 PR:000016008 denotes TACC3
T5335 467-471 SO:0000704 denotes gene
T5336 492-498 SO:0000417 denotes domain
T5337 532-537 SO:0000147 denotes exons
T5338 658-663 PR:000016008 denotes TACC3
T5339 676-681 NCBITaxon:9606 denotes human
T5340 686-691 NCBITaxon:10088 denotes mouse
T5341 775-786 SO:0000855 denotes orthologues
T5342 886-890 SO:0000147 denotes exon
T5343 894-899 NCBITaxon:9606 denotes human
T5344 908-918 NCBITaxon:31031 denotes pufferfish
T5345 942-949 NCBITaxon:9989 denotes rodents
T5346 1062-1066 SO:0000147 denotes exon
T5347 1074-1079 NCBITaxon:10088 denotes mouse
T5348 1084-1087 NCBITaxon:10114 denotes rat
T5349 1088-1093 PR:000016008 denotes TACC3
T5350 1094-1099 SO:0000704 denotes genes
T5351 1153-1158 NCBITaxon:10088 denotes mouse
T5352 1159-1164 PR:000016008 denotes TACC3
T5353 1165-1171 GO:0008380 denotes splice
T5354 1275-1279 SO:0000147 denotes exon
T5355 1603-1609 NCBITaxon:9986 denotes rabbit
T5356 1672-1678 NCBITaxon:9989 denotes rodent
T5357 1679-1684 PR:000016008 denotes TACC3
T5358 1751-1760 NCBITaxon:8292 denotes amphibian
T5359 1761-1768 NCBITaxon:8353 denotes Xenopus
T5360 1769-1774 PR:000016008 denotes TACC3

2_test

Id Subject Object Predicate Lexical cue
15207008-10366448-9666007 788-789 10366448 denotes 2
15207008-10366448-9666008 1225-1226 10366448 denotes 2
15207008-11025203-9666009 1227-1228 11025203 denotes 7
15207008-12237944-9666010 1229-1231 12237944 denotes 17
15207008-11025203-9666011 1502-1503 11025203 denotes 7
15207008-10635326-9666012 1784-1785 10635326 denotes 8