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PMC:441373 / 14660-16171 JSONTXT

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Id Subject Object Predicate Lexical cue
T4155 0-3 DT denotes The
T4156 17-21 NN denotes tree
T4157 4-16 JJ denotes phylogenetic
T4158 48-57 VBZ denotes resembles
T4159 22-24 IN denotes of
T4160 25-28 DT denotes the
T4161 34-39 NNS denotes genes
T4162 29-33 NN denotes FGFR
T4163 40-47 RB denotes closely
T4164 58-62 DT denotes that
T4165 63-65 IN denotes of
T4166 66-69 DT denotes the
T4167 89-94 NNS denotes genes
T4168 70-80 NN denotes vertebrate
T4169 81-86 NN denotes TACC1
T4170 86-87 HYPH denotes -
T4171 87-88 CD denotes 3
T4172 94-95 . denotes .
T4173 95-371 sentence denotes Recently, detailed analyses of the chromosomal regions containing the FGFR gene family in humans, mouse and the arthopod D. melanogaster have revealed the conservation of paralogous chromosomal segments between these organisms (Fig. 2, [13], Table 1 [see Additional file 1]).
T4174 96-104 RB denotes Recently
T4175 238-246 VBN denotes revealed
T4176 104-106 , denotes ,
T4177 106-114 JJ denotes detailed
T4178 115-123 NNS denotes analyses
T4179 124-126 IN denotes of
T4180 127-130 DT denotes the
T4181 143-150 NNS denotes regions
T4182 131-142 JJ denotes chromosomal
T4183 151-161 VBG denotes containing
T4184 162-165 DT denotes the
T4185 176-182 NN denotes family
T4186 166-170 NN denotes FGFR
T4187 171-175 NN denotes gene
T4188 183-185 IN denotes in
T4189 186-192 NNS denotes humans
T4190 192-194 , denotes ,
T4191 194-199 NN denotes mouse
T4192 200-203 CC denotes and
T4193 204-207 DT denotes the
T4194 208-216 NN denotes arthopod
T4195 217-219 NNP denotes D.
T4196 220-232 NNP denotes melanogaster
T4197 233-237 VBP denotes have
T4198 247-250 DT denotes the
T4199 251-263 NN denotes conservation
T4200 264-266 IN denotes of
T4201 267-277 JJ denotes paralogous
T4202 290-298 NNS denotes segments
T4203 278-289 JJ denotes chromosomal
T4204 299-306 IN denotes between
T4205 307-312 DT denotes these
T4206 313-322 NNS denotes organisms
T4207 323-324 -LRB- denotes (
T4208 338-343 NN denotes Table
T4209 324-328 NN denotes Fig.
T4210 329-330 CD denotes 2
T4211 330-332 , denotes ,
T4212 332-333 -LRB- denotes [
T4213 333-335 CD denotes 13
T4214 335-336 -RRB- denotes ]
T4215 336-338 , denotes ,
T4216 344-345 CD denotes 1
T4217 346-347 -LRB- denotes [
T4218 347-350 VB denotes see
T4219 351-361 JJ denotes Additional
T4220 362-366 NN denotes file
T4221 367-368 CD denotes 1
T4222 368-369 -RRB- denotes ]
T4223 369-370 -RRB- denotes )
T4224 370-371 . denotes .
T4225 371-680 sentence denotes This has provided further support that an ancient chromosomal segment was duplicated twice during vertebrate evolution, with the first duplication that gave rise to the human chromosome 4p16/5q32-ter and human chromosome 8p/10q23-ter ancestors occurring in the early stages after the invertebrate divergence.
T4226 372-376 DT denotes This
T4227 381-389 VBN denotes provided
T4228 377-380 VBZ denotes has
T4229 390-397 JJ denotes further
T4230 398-405 NN denotes support
T4231 406-410 IN denotes that
T4232 446-456 VBN denotes duplicated
T4233 411-413 DT denotes an
T4234 434-441 NN denotes segment
T4235 414-421 JJ denotes ancient
T4236 422-433 JJ denotes chromosomal
T4237 442-445 VBD denotes was
T4238 457-462 RB denotes twice
T4239 463-469 IN denotes during
T4240 470-480 NN denotes vertebrate
T4241 481-490 NN denotes evolution
T4242 490-492 , denotes ,
T4243 492-496 IN denotes with
T4244 497-500 DT denotes the
T4245 507-518 NN denotes duplication
T4246 501-506 JJ denotes first
T4247 616-625 VBG denotes occurring
T4248 519-523 WDT denotes that
T4249 524-528 VBD denotes gave
T4250 529-533 NN denotes rise
T4251 534-536 IN denotes to
T4252 537-540 DT denotes the
T4253 606-615 NNS denotes ancestors
T4254 541-546 JJ denotes human
T4255 547-557 NN denotes chromosome
T4256 568-571 NN denotes ter
T4257 558-562 NN denotes 4p16
T4258 563-567 NN denotes 5q32
T4259 562-563 HYPH denotes /
T4260 567-568 HYPH denotes -
T4261 572-575 CC denotes and
T4262 576-581 JJ denotes human
T4263 582-592 NN denotes chromosome
T4264 602-605 NN denotes ter
T4265 593-595 NN denotes 8p
T4266 596-601 NN denotes 10q23
T4267 595-596 HYPH denotes /
T4268 601-602 HYPH denotes -
T4269 626-628 IN denotes in
T4270 629-632 DT denotes the
T4271 639-645 NNS denotes stages
T4272 633-638 JJ denotes early
T4273 646-651 IN denotes after
T4274 652-655 DT denotes the
T4275 669-679 NN denotes divergence
T4276 656-668 NN denotes invertebrate
T4277 679-680 . denotes .
T4278 680-898 sentence denotes This suggests that the ancestral FGFR-TACC gene pair most probably arose prior to the initial duplication and subsequent divergence of these paralogous chromosomal segments, estimated to have occurred 687 ± 155.7 MYA.
T4279 681-685 DT denotes This
T4280 686-694 VBZ denotes suggests
T4281 695-699 IN denotes that
T4282 748-753 VBD denotes arose
T4283 700-703 DT denotes the
T4284 729-733 NN denotes pair
T4285 704-713 JJ denotes ancestral
T4286 714-718 NN denotes FGFR
T4287 719-723 NN denotes TACC
T4288 718-719 HYPH denotes -
T4289 724-728 NN denotes gene
T4290 734-738 RBS denotes most
T4291 739-747 RB denotes probably
T4292 754-759 JJ denotes prior
T4293 760-762 IN denotes to
T4294 763-766 DT denotes the
T4295 775-786 NN denotes duplication
T4296 767-774 JJ denotes initial
T4297 787-790 CC denotes and
T4298 791-801 JJ denotes subsequent
T4299 802-812 NN denotes divergence
T4300 813-815 IN denotes of
T4301 816-821 DT denotes these
T4302 845-853 NNS denotes segments
T4303 822-832 JJ denotes paralogous
T4304 833-844 JJ denotes chromosomal
T4305 853-855 , denotes ,
T4306 855-864 VBN denotes estimated
T4307 865-867 TO denotes to
T4308 873-881 VBN denotes occurred
T4309 868-872 VB denotes have
T4310 882-885 CD denotes 687
T4311 888-893 CD denotes 155.7
T4312 886-887 SYM denotes ±
T4313 894-897 RB denotes MYA
T4314 897-898 . denotes .
T4315 898-1022 sentence denotes This has raised the suggestion that a fourth TACC gene in vertebrates would reside in the same chromosomal region as FGFR4.
T4316 899-903 DT denotes This
T4317 908-914 VBN denotes raised
T4318 904-907 VBZ denotes has
T4319 915-918 DT denotes the
T4320 919-929 NN denotes suggestion
T4321 930-934 IN denotes that
T4322 975-981 VB denotes reside
T4323 935-936 DT denotes a
T4324 949-953 NN denotes gene
T4325 937-943 JJ denotes fourth
T4326 944-948 NN denotes TACC
T4327 954-956 IN denotes in
T4328 957-968 NNS denotes vertebrates
T4329 969-974 MD denotes would
T4330 982-984 IN denotes in
T4331 985-988 DT denotes the
T4332 1006-1012 NN denotes region
T4333 989-993 JJ denotes same
T4334 994-1005 JJ denotes chromosomal
T4335 1013-1015 IN denotes as
T4336 1016-1021 NN denotes FGFR4
T4337 1021-1022 . denotes .
T4338 1022-1126 sentence denotes Indeed this hypothesis has been used in support for the RHAMM gene as a member of the TACC family [10].
T4339 1023-1029 RB denotes Indeed
T4340 1055-1059 VBN denotes used
T4341 1030-1034 DT denotes this
T4342 1035-1045 NN denotes hypothesis
T4343 1046-1049 VBZ denotes has
T4344 1050-1054 VBN denotes been
T4345 1060-1062 IN denotes in
T4346 1063-1070 NN denotes support
T4347 1071-1074 IN denotes for
T4348 1075-1078 DT denotes the
T4349 1085-1089 NN denotes gene
T4350 1079-1084 NN denotes RHAMM
T4351 1090-1092 IN denotes as
T4352 1093-1094 DT denotes a
T4353 1095-1101 NN denotes member
T4354 1102-1104 IN denotes of
T4355 1105-1108 DT denotes the
T4356 1114-1120 NN denotes family
T4357 1109-1113 NN denotes TACC
T4358 1121-1122 -LRB- denotes [
T4359 1122-1124 CD denotes 10
T4360 1124-1125 -RRB- denotes ]
T4361 1125-1126 . denotes .
T4362 1126-1201 sentence denotes Human RHAMM maps to chromosome 5q32 in a region bounded by GPX3 and NKX2E.
T4363 1127-1132 JJ denotes Human
T4364 1133-1138 NN denotes RHAMM
T4365 1139-1143 VBZ denotes maps
T4366 1144-1146 IN denotes to
T4367 1147-1157 NN denotes chromosome
T4368 1158-1162 NN denotes 5q32
T4369 1163-1165 IN denotes in
T4370 1166-1167 DT denotes a
T4371 1168-1174 NN denotes region
T4372 1175-1182 VBN denotes bounded
T4373 1183-1185 IN denotes by
T4374 1186-1190 NN denotes GPX3
T4375 1191-1194 CC denotes and
T4376 1195-1200 NN denotes NKX2E
T4377 1200-1201 . denotes .
T4378 1201-1296 sentence denotes These loci separate two clusters of genes on human chromosome 5 that are paralogous with 4p16.
T4379 1202-1207 DT denotes These
T4380 1208-1212 NNS denotes loci
T4381 1213-1221 VBP denotes separate
T4382 1222-1225 CD denotes two
T4383 1226-1234 NNS denotes clusters
T4384 1235-1237 IN denotes of
T4385 1238-1243 NNS denotes genes
T4386 1244-1246 IN denotes on
T4387 1247-1252 JJ denotes human
T4388 1253-1263 NN denotes chromosome
T4389 1264-1265 CD denotes 5
T4390 1266-1270 WDT denotes that
T4391 1271-1274 VBP denotes are
T4392 1275-1285 JJ denotes paralogous
T4393 1286-1290 IN denotes with
T4394 1291-1295 CD denotes 4p16
T4395 1295-1296 . denotes .
T4396 1296-1511 sentence denotes Interestingly, these three clusters are located on different chromosomes in mouse and rat (Fig. 2), further suggesting that this cluster of genes was transposed into this region after the primate/rodent divergence.
T4397 1297-1310 RB denotes Interestingly
T4398 1337-1344 VBN denotes located
T4399 1310-1312 , denotes ,
T4400 1312-1317 DT denotes these
T4401 1324-1332 NNS denotes clusters
T4402 1318-1323 CD denotes three
T4403 1333-1336 VBP denotes are
T4404 1345-1347 IN denotes on
T4405 1348-1357 JJ denotes different
T4406 1358-1369 NNS denotes chromosomes
T4407 1370-1372 IN denotes in
T4408 1373-1378 NN denotes mouse
T4409 1379-1382 CC denotes and
T4410 1383-1386 NN denotes rat
T4411 1387-1388 -LRB- denotes (
T4412 1388-1392 NN denotes Fig.
T4413 1393-1394 CD denotes 2
T4414 1394-1395 -RRB- denotes )
T4415 1395-1397 , denotes ,
T4416 1397-1404 RB denotes further
T4417 1405-1415 VBG denotes suggesting
T4418 1416-1420 IN denotes that
T4419 1447-1457 VBN denotes transposed
T4420 1421-1425 DT denotes this
T4421 1426-1433 NN denotes cluster
T4422 1434-1436 IN denotes of
T4423 1437-1442 NNS denotes genes
T4424 1443-1446 VBD denotes was
T4425 1458-1462 IN denotes into
T4426 1463-1467 DT denotes this
T4427 1468-1474 NN denotes region
T4428 1475-1480 IN denotes after
T4429 1481-1484 DT denotes the
T4430 1500-1510 NN denotes divergence
T4431 1485-1492 NN denotes primate
T4432 1493-1499 NN denotes rodent
T4433 1492-1493 HYPH denotes /
T4434 1510-1511 . denotes .
R2451 T4155 T4156 det The,tree
R2452 T4156 T4158 nsubj tree,resembles
R2453 T4157 T4156 amod phylogenetic,tree
R2454 T4159 T4156 prep of,tree
R2455 T4160 T4161 det the,genes
R2456 T4161 T4159 pobj genes,of
R2457 T4162 T4161 compound FGFR,genes
R2458 T4163 T4158 advmod closely,resembles
R2459 T4164 T4158 dobj that,resembles
R2460 T4165 T4164 prep of,that
R2461 T4166 T4167 det the,genes
R2462 T4167 T4165 pobj genes,of
R2463 T4168 T4167 nmod vertebrate,genes
R2464 T4169 T4167 nmod TACC1,genes
R2465 T4170 T4169 punct -,TACC1
R2466 T4171 T4169 nummod 3,TACC1
R2467 T4172 T4158 punct .,resembles
R2468 T4174 T4175 advmod Recently,revealed
R2469 T4176 T4175 punct ", ",revealed
R2470 T4177 T4178 amod detailed,analyses
R2471 T4178 T4175 nsubj analyses,revealed
R2472 T4179 T4178 prep of,analyses
R2473 T4180 T4181 det the,regions
R2474 T4181 T4179 pobj regions,of
R2475 T4182 T4181 amod chromosomal,regions
R2476 T4183 T4181 acl containing,regions
R2477 T4184 T4185 det the,family
R2478 T4185 T4183 dobj family,containing
R2479 T4186 T4185 compound FGFR,family
R2480 T4187 T4185 compound gene,family
R2481 T4188 T4183 prep in,containing
R2482 T4189 T4188 pobj humans,in
R2483 T4190 T4189 punct ", ",humans
R2484 T4191 T4189 conj mouse,humans
R2485 T4192 T4191 cc and,mouse
R2486 T4193 T4194 det the,arthopod
R2487 T4194 T4191 conj arthopod,mouse
R2488 T4195 T4196 compound D.,melanogaster
R2489 T4196 T4194 appos melanogaster,arthopod
R2490 T4197 T4175 aux have,revealed
R2491 T4198 T4199 det the,conservation
R2492 T4199 T4175 dobj conservation,revealed
R2493 T4200 T4199 prep of,conservation
R2494 T4201 T4202 amod paralogous,segments
R2495 T4202 T4200 pobj segments,of
R2496 T4203 T4202 amod chromosomal,segments
R2497 T4204 T4199 prep between,conservation
R2498 T4205 T4206 det these,organisms
R2499 T4206 T4204 pobj organisms,between
R2500 T4207 T4208 punct (,Table
R2501 T4208 T4175 parataxis Table,revealed
R2502 T4209 T4208 dep Fig.,Table
R2503 T4210 T4209 nummod 2,Fig.
R2504 T4211 T4208 punct ", ",Table
R2505 T4212 T4208 punct [,Table
R2506 T4213 T4208 dep 13,Table
R2507 T4214 T4208 punct ],Table
R2508 T4215 T4208 punct ", ",Table
R2509 T4216 T4208 nummod 1,Table
R2510 T4217 T4208 punct [,Table
R2511 T4218 T4208 advcl see,Table
R2512 T4219 T4220 amod Additional,file
R2513 T4220 T4218 dobj file,see
R2514 T4221 T4220 nummod 1,file
R2515 T4222 T4208 punct ],Table
R2516 T4223 T4208 punct ),Table
R2517 T4224 T4175 punct .,revealed
R2518 T4226 T4227 nsubj This,provided
R2519 T4228 T4227 aux has,provided
R2520 T4229 T4230 amod further,support
R2521 T4230 T4227 dobj support,provided
R2522 T4231 T4232 mark that,duplicated
R2523 T4232 T4230 acl duplicated,support
R2524 T4233 T4234 det an,segment
R2525 T4234 T4232 nsubjpass segment,duplicated
R2526 T4235 T4234 amod ancient,segment
R2527 T4236 T4234 amod chromosomal,segment
R2528 T4237 T4232 auxpass was,duplicated
R2529 T4238 T4232 advmod twice,duplicated
R2530 T4239 T4232 prep during,duplicated
R2531 T4240 T4241 compound vertebrate,evolution
R2532 T4241 T4239 pobj evolution,during
R2533 T4242 T4232 punct ", ",duplicated
R2534 T4243 T4232 prep with,duplicated
R2535 T4244 T4245 det the,duplication
R2536 T4245 T4247 nsubj duplication,occurring
R2537 T4246 T4245 amod first,duplication
R2538 T4247 T4243 pcomp occurring,with
R2539 T4248 T4249 dep that,gave
R2540 T4249 T4245 relcl gave,duplication
R2541 T4250 T4249 dobj rise,gave
R2542 T4251 T4249 prep to,gave
R2543 T4252 T4253 det the,ancestors
R2544 T4253 T4251 pobj ancestors,to
R2545 T4254 T4255 amod human,chromosome
R2546 T4255 T4256 nmod chromosome,ter
R2547 T4256 T4253 nmod ter,ancestors
R2548 T4257 T4258 nmod 4p16,5q32
R2549 T4258 T4256 nmod 5q32,ter
R2550 T4259 T4258 punct /,5q32
R2551 T4260 T4256 punct -,ter
R2552 T4261 T4256 cc and,ter
R2553 T4262 T4263 amod human,chromosome
R2554 T4263 T4264 compound chromosome,ter
R2555 T4264 T4256 conj ter,ter
R2556 T4265 T4266 compound 8p,10q23
R2557 T4266 T4264 compound 10q23,ter
R2558 T4267 T4266 punct /,10q23
R2559 T4268 T4264 punct -,ter
R2560 T4269 T4247 prep in,occurring
R2561 T4270 T4271 det the,stages
R2562 T4271 T4269 pobj stages,in
R2563 T4272 T4271 amod early,stages
R2564 T4273 T4271 prep after,stages
R2565 T4274 T4275 det the,divergence
R2566 T4275 T4273 pobj divergence,after
R2567 T4276 T4275 compound invertebrate,divergence
R2568 T4277 T4227 punct .,provided
R2569 T4279 T4280 nsubj This,suggests
R2570 T4281 T4282 mark that,arose
R2571 T4282 T4280 ccomp arose,suggests
R2572 T4283 T4284 det the,pair
R2573 T4284 T4282 nsubj pair,arose
R2574 T4285 T4284 amod ancestral,pair
R2575 T4286 T4287 compound FGFR,TACC
R2576 T4287 T4284 compound TACC,pair
R2577 T4288 T4287 punct -,TACC
R2578 T4289 T4284 compound gene,pair
R2579 T4290 T4291 advmod most,probably
R2580 T4291 T4282 advmod probably,arose
R2581 T4292 T4293 amod prior,to
R2582 T4293 T4282 prep to,arose
R2583 T4294 T4295 det the,duplication
R2584 T4295 T4293 pobj duplication,to
R2585 T4296 T4295 amod initial,duplication
R2586 T4297 T4295 cc and,duplication
R2587 T4298 T4299 amod subsequent,divergence
R2588 T4299 T4295 conj divergence,duplication
R2589 T4300 T4295 prep of,duplication
R2590 T4301 T4302 det these,segments
R2591 T4302 T4300 pobj segments,of
R2592 T4303 T4302 amod paralogous,segments
R2593 T4304 T4302 amod chromosomal,segments
R2594 T4305 T4295 punct ", ",duplication
R2595 T4306 T4295 acl estimated,duplication
R2596 T4307 T4308 aux to,occurred
R2597 T4308 T4306 xcomp occurred,estimated
R2598 T4309 T4308 aux have,occurred
R2599 T4310 T4311 quantmod 687,155.7
R2600 T4311 T4313 npadvmod 155.7,MYA
R2601 T4312 T4311 punct ±,155.7
R2602 T4313 T4308 advmod MYA,occurred
R2603 T4314 T4280 punct .,suggests
R2604 T4316 T4317 nsubj This,raised
R2605 T4318 T4317 aux has,raised
R2606 T4319 T4320 det the,suggestion
R2607 T4320 T4317 dobj suggestion,raised
R2608 T4321 T4322 mark that,reside
R2609 T4322 T4320 acl reside,suggestion
R2610 T4323 T4324 det a,gene
R2611 T4324 T4322 nsubj gene,reside
R2612 T4325 T4324 amod fourth,gene
R2613 T4326 T4324 compound TACC,gene
R2614 T4327 T4324 prep in,gene
R2615 T4328 T4327 pobj vertebrates,in
R2616 T4329 T4322 aux would,reside
R2617 T4330 T4322 prep in,reside
R2618 T4331 T4332 det the,region
R2619 T4332 T4330 pobj region,in
R2620 T4333 T4332 amod same,region
R2621 T4334 T4332 amod chromosomal,region
R2622 T4335 T4332 prep as,region
R2623 T4336 T4335 pobj FGFR4,as
R2624 T4337 T4317 punct .,raised
R2625 T4339 T4340 advmod Indeed,used
R2626 T4341 T4342 det this,hypothesis
R2627 T4342 T4340 nsubjpass hypothesis,used
R2628 T4343 T4340 aux has,used
R2629 T4344 T4340 auxpass been,used
R2630 T4345 T4340 prep in,used
R2631 T4346 T4345 pobj support,in
R2632 T4347 T4346 prep for,support
R2633 T4348 T4349 det the,gene
R2634 T4349 T4347 pobj gene,for
R2635 T4350 T4349 compound RHAMM,gene
R2636 T4351 T4349 prep as,gene
R2637 T4352 T4353 det a,member
R2638 T4353 T4351 pobj member,as
R2639 T4354 T4353 prep of,member
R2640 T4355 T4356 det the,family
R2641 T4356 T4354 pobj family,of
R2642 T4357 T4356 compound TACC,family
R2643 T4358 T4359 punct [,10
R2644 T4359 T4340 parataxis 10,used
R2645 T4360 T4359 punct ],10
R2646 T4361 T4340 punct .,used
R2647 T4363 T4364 amod Human,RHAMM
R2648 T4364 T4365 nsubj RHAMM,maps
R2649 T4366 T4365 prep to,maps
R2650 T4367 T4368 compound chromosome,5q32
R2651 T4368 T4366 pobj 5q32,to
R2652 T4369 T4365 prep in,maps
R2653 T4370 T4371 det a,region
R2654 T4371 T4369 pobj region,in
R2655 T4372 T4371 acl bounded,region
R2656 T4373 T4372 agent by,bounded
R2657 T4374 T4373 pobj GPX3,by
R2658 T4375 T4374 cc and,GPX3
R2659 T4376 T4374 conj NKX2E,GPX3
R2660 T4377 T4365 punct .,maps
R2661 T4379 T4380 det These,loci
R2662 T4380 T4381 nsubj loci,separate
R2663 T4382 T4383 nummod two,clusters
R2664 T4383 T4381 dobj clusters,separate
R2665 T4384 T4383 prep of,clusters
R2666 T4385 T4384 pobj genes,of
R2667 T4386 T4383 prep on,clusters
R2668 T4387 T4388 amod human,chromosome
R2669 T4388 T4386 pobj chromosome,on
R2670 T4389 T4388 nummod 5,chromosome
R2671 T4390 T4391 dep that,are
R2672 T4391 T4383 relcl are,clusters
R2713 T4434 T4398 punct .,located
R2693 T4414 T4412 punct ),Fig.
R2694 T4415 T4398 punct ", ",located
R2695 T4416 T4417 advmod further,suggesting
R2696 T4417 T4398 advcl suggesting,located
R2697 T4418 T4419 mark that,transposed
R2698 T4419 T4417 ccomp transposed,suggesting
R2699 T4420 T4421 det this,cluster
R2673 T4392 T4391 acomp paralogous,are
R2674 T4393 T4392 prep with,paralogous
R2675 T4394 T4393 pobj 4p16,with
R2676 T4395 T4381 punct .,separate
R2677 T4397 T4398 advmod Interestingly,located
R2678 T4399 T4398 punct ", ",located
R2679 T4400 T4401 det these,clusters
R2680 T4401 T4398 nsubjpass clusters,located
R2681 T4402 T4401 nummod three,clusters
R2682 T4403 T4398 auxpass are,located
R2683 T4404 T4398 prep on,located
R2684 T4405 T4406 amod different,chromosomes
R2685 T4406 T4404 pobj chromosomes,on
R2686 T4407 T4398 prep in,located
R2687 T4408 T4407 pobj mouse,in
R2688 T4409 T4408 cc and,mouse
R2689 T4410 T4408 conj rat,mouse
R2690 T4411 T4412 punct (,Fig.
R2691 T4412 T4398 parataxis Fig.,located
R2692 T4413 T4412 nummod 2,Fig.
R2700 T4421 T4419 nsubjpass cluster,transposed
R2701 T4422 T4421 prep of,cluster
R2702 T4423 T4422 pobj genes,of
R2703 T4424 T4419 auxpass was,transposed
R2704 T4425 T4419 prep into,transposed
R2705 T4426 T4427 det this,region
R2706 T4427 T4425 pobj region,into
R2707 T4428 T4419 prep after,transposed
R2708 T4429 T4430 det the,divergence
R2709 T4430 T4428 pobj divergence,after
R2710 T4431 T4432 compound primate,rodent
R2711 T4432 T4430 compound rodent,divergence
R2712 T4433 T4432 punct /,rodent

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3973 547-557 GO_SO_EXT:chromosome denotes chromosome
T3974 576-581 NCBITaxon:9606 denotes human
T3975 582-592 GO_SO_EXT:chromosome denotes chromosome
T3976 656-668 NCBITaxon_EXT:invertebrate denotes invertebrate
T3977 714-718 GO_PR_EXT:fibroblast_growth_factor_receptor denotes FGFR
T3978 724-728 SO_EXT:0000704 denotes gene
T3979 775-786 SO_EXT:sequence_duplication_entity_or_process denotes duplication
T3980 822-832 _FRAGMENT denotes paralogous
T3981 845-853 SO_EXT:0000854 denotes segments
T3982 833-853 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal segments
T3983 949-953 SO_EXT:0000704 denotes gene
T3984 957-968 NCBITaxon:7742 denotes vertebrates
T3985 994-1012 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal region
T3986 1016-1021 PR_EXT:000001451 denotes FGFR4
T3987 1079-1084 PR_EXT:000001856 denotes RHAMM
T3988 1085-1089 SO_EXT:0000704 denotes gene
T3989 1127-1132 NCBITaxon:9606 denotes Human
T3990 1133-1138 PR_EXT:000001856 denotes RHAMM
T3991 1147-1157 GO_SO_EXT:chromosome denotes chromosome
T3992 1186-1190 PR_EXT:000008212 denotes GPX3
T3993 1195-1200 PR_EXT:000011245 denotes NKX2E
T3994 1238-1243 SO_EXT:0000704 denotes genes
T3995 1247-1252 NCBITaxon:9606 denotes human
T3996 1253-1263 GO_SO_EXT:chromosome denotes chromosome
T3997 1275-1285 SO:0000859 denotes paralogous
T3998 1358-1369 GO_SO_EXT:chromosome denotes chromosomes
T3999 1373-1378 NCBITaxon:10088 denotes mouse
T4000 1383-1386 NCBITaxon:10114 denotes rat
T4001 1437-1442 SO_EXT:0000704 denotes genes
T4002 1447-1457 GO_SO_EXT:sequence_transposition_process denotes transposed
T4003 1485-1492 NCBITaxon:9443 denotes primate
T4004 1493-1499 NCBITaxon:9989 denotes rodent
T3951 29-33 GO_PR_EXT:fibroblast_growth_factor_receptor denotes FGFR
T3952 34-39 SO_EXT:0000704 denotes genes
T3953 70-80 NCBITaxon:7742 denotes vertebrate
T3954 81-86 PR_EXT:000016006 denotes TACC1
T3955 89-94 SO_EXT:0000704 denotes genes
T3956 131-150 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal regions
T3957 166-170 GO_PR_EXT:fibroblast_growth_factor_receptor denotes FGFR
T3958 171-175 SO_EXT:0000704 denotes gene
T3959 186-192 NCBITaxon:9606 denotes humans
T3960 194-199 NCBITaxon:10088 denotes mouse
T3961 208-216 NCBITaxon:6656 denotes arthopod
T3962 217-232 NCBITaxon:7227 denotes D. melanogaster
T3963 251-263 SO_EXT:biological_conservation_process_or_quality denotes conservation
T3964 267-277 _FRAGMENT denotes paralogous
T3965 290-298 SO_EXT:0000854 denotes segments
T3966 278-298 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal segments
T3967 313-322 NCBITaxon:1 denotes organisms
T3968 422-441 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal segment
T3969 446-456 SO_EXT:sequence_duplication_process denotes duplicated
T3970 470-480 NCBITaxon:7742 denotes vertebrate
T3971 507-518 SO_EXT:sequence_duplication_entity_or_process denotes duplication
T3972 541-546 NCBITaxon:9606 denotes human
R2438 T3965 T3964 _lexicallyChainedTo segments,paralogous
R2439 T3981 T3980 _lexicallyChainedTo segments,paralogous

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3806 171-175 SO:0000704 denotes gene
T3807 186-192 NCBITaxon:9606 denotes humans
T3808 194-199 NCBITaxon:10088 denotes mouse
T3809 208-216 NCBITaxon:6656 denotes arthopod
T3810 217-232 NCBITaxon:7227 denotes D. melanogaster
T3811 267-277 _FRAGMENT denotes paralogous
T3812 290-298 SO:0000854 denotes segments
T3813 313-322 NCBITaxon:1 denotes organisms
T3814 470-480 NCBITaxon:7742 denotes vertebrate
T3815 541-546 NCBITaxon:9606 denotes human
T3816 576-581 NCBITaxon:9606 denotes human
T3817 724-728 SO:0000704 denotes gene
T3818 822-832 _FRAGMENT denotes paralogous
T3819 845-853 SO:0000854 denotes segments
T3820 949-953 SO:0000704 denotes gene
T3821 957-968 NCBITaxon:7742 denotes vertebrates
T3822 1016-1021 PR:000001451 denotes FGFR4
T3823 1079-1084 PR:000001856 denotes RHAMM
T3824 1085-1089 SO:0000704 denotes gene
T3825 1127-1132 NCBITaxon:9606 denotes Human
T3826 1133-1138 PR:000001856 denotes RHAMM
T3827 1186-1190 PR:000008212 denotes GPX3
T3828 1195-1200 PR:000011245 denotes NKX2E
T3829 1238-1243 SO:0000704 denotes genes
T3830 1247-1252 NCBITaxon:9606 denotes human
T3831 1275-1285 SO:0000859 denotes paralogous
T3832 1373-1378 NCBITaxon:10088 denotes mouse
T3833 1383-1386 NCBITaxon:10114 denotes rat
T3834 1437-1442 SO:0000704 denotes genes
T3835 1485-1492 NCBITaxon:9443 denotes primate
T3836 1493-1499 NCBITaxon:9989 denotes rodent
T3802 34-39 SO:0000704 denotes genes
T3803 70-80 NCBITaxon:7742 denotes vertebrate
T3804 81-86 PR:000016006 denotes TACC1
T3805 89-94 SO:0000704 denotes genes
R2434 T3812 T3811 _lexicallyChainedTo segments,paralogous
R2435 T3819 T3818 _lexicallyChainedTo segments,paralogous

2_test

Id Subject Object Predicate Lexical cue
15207008-12777526-9666000 333-335 12777526 denotes 13
15207008-12808028-9666001 1122-1124 12808028 denotes 10