PMC:3589482 / 9959-10148 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T5695","span":{"begin":188,"end":189},"obj":"."},{"id":"T5694","span":{"begin":180,"end":188},"obj":"NNP"},{"id":"T5693","span":{"begin":172,"end":179},"obj":"VB"},{"id":"T5692","span":{"begin":169,"end":171},"obj":"TO"},{"id":"T5691","span":{"begin":163,"end":168},"obj":"JJ"},{"id":"T5690","span":{"begin":158,"end":162},"obj":"JJ"},{"id":"T5689","span":{"begin":155,"end":157},"obj":"IN"},{"id":"T5688","span":{"begin":149,"end":154},"obj":"NNS"},{"id":"T5687","span":{"begin":137,"end":148},"obj":"NN"},{"id":"T5686","span":{"begin":126,"end":136},"obj":"VBP"},{"id":"T5685","span":{"begin":124,"end":125},"obj":"PRP"},{"id":"T5684","span":{"begin":118,"end":123},"obj":"NNP"},{"id":"T5683","span":{"begin":114,"end":117},"obj":"NNP"},{"id":"T5682","span":{"begin":110,"end":113},"obj":"DT"},{"id":"T5681","span":{"begin":105,"end":109},"obj":"IN"},{"id":"T5680","span":{"begin":101,"end":104},"obj":"CD"},{"id":"T5679","span":{"begin":98,"end":100},"obj":"TO"},{"id":"T5678","span":{"begin":95,"end":97},"obj":"CD"},{"id":"T5677","span":{"begin":94,"end":95},"obj":"VBP"},{"id":"T5676","span":{"begin":86,"end":93},"obj":"NNS"},{"id":"T5675","span":{"begin":77,"end":85},"obj":"NN"},{"id":"T5674","span":{"begin":68,"end":76},"obj":"NNP"},{"id":"T5673","span":{"begin":61,"end":67},"obj":"NN"},{"id":"T5672","span":{"begin":57,"end":60},"obj":"DT"},{"id":"T5671","span":{"begin":48,"end":56},"obj":"VB"},{"id":"T5670","span":{"begin":45,"end":47},"obj":"TO"},{"id":"T5669","span":{"begin":40,"end":44},"obj":"VBN"},{"id":"T5668","span":{"begin":35,"end":39},"obj":"VBD"},{"id":"T5667","span":{"begin":31,"end":34},"obj":"NNP"},{"id":"T5666","span":{"begin":27,"end":30},"obj":"NNP"},{"id":"T5665","span":{"begin":23,"end":26},"obj":"CC"},{"id":"T5664","span":{"begin":16,"end":22},"obj":"NNP"},{"id":"T5663","span":{"begin":8,"end":15},"obj":"NNS"},{"id":"T5662","span":{"begin":4,"end":7},"obj":"NNP"},{"id":"T5661","span":{"begin":0,"end":3},"obj":"DT"}],"relations":[{"id":"R4022","pred":"det","subj":"T5661","obj":"T5663"},{"id":"R4023","pred":"compound","subj":"T5662","obj":"T5663"},{"id":"R4024","pred":"nsubjpass","subj":"T5663","obj":"T5669"},{"id":"R4025","pred":"appos","subj":"T5664","obj":"T5663"},{"id":"R4026","pred":"cc","subj":"T5665","obj":"T5664"},{"id":"R4027","pred":"poss","subj":"T5666","obj":"T5667"},{"id":"R4028","pred":"conj","subj":"T5667","obj":"T5664"},{"id":"R4029","pred":"auxpass","subj":"T5668","obj":"T5669"},{"id":"R4030","pred":"ROOT","subj":"T5669","obj":"T5669"},{"id":"R4031","pred":"aux","subj":"T5670","obj":"T5671"},{"id":"R4032","pred":"xcomp","subj":"T5671","obj":"T5669"},{"id":"R4033","pred":"det","subj":"T5672","obj":"T5676"},{"id":"R4034","pred":"amod","subj":"T5673","obj":"T5676"},{"id":"R4035","pred":"compound","subj":"T5674","obj":"T5675"},{"id":"R4036","pred":"compound","subj":"T5675","obj":"T5676"},{"id":"R4037","pred":"dobj","subj":"T5676","obj":"T5671"},{"id":"R4038","pred":"conj","subj":"T5677","obj":"T5671"},{"id":"R4039","pred":"quantmod","subj":"T5678","obj":"T5680"},{"id":"R4040","pred":"quantmod","subj":"T5679","obj":"T5680"},{"id":"R4041","pred":"dobj","subj":"T5680","obj":"T5677"},{"id":"R4042","pred":"prep","subj":"T5681","obj":"T5677"},{"id":"R4043","pred":"det","subj":"T5682","obj":"T5684"},{"id":"R4044","pred":"compound","subj":"T5683","obj":"T5684"},{"id":"R4045","pred":"pobj","subj":"T5684","obj":"T5681"},{"id":"R4046","pred":"nsubj","subj":"T5685","obj":"T5686"},{"id":"R4047","pred":"conj","subj":"T5686","obj":"T5669"},{"id":"R4048","pred":"compound","subj":"T5687","obj":"T5688"},{"id":"R4049","pred":"dobj","subj":"T5688","obj":"T5686"},{"id":"R4050","pred":"prep","subj":"T5689","obj":"T5688"},{"id":"R4051","pred":"amod","subj":"T5690","obj":"T5691"},{"id":"R4052","pred":"pobj","subj":"T5691","obj":"T5689"},{"id":"R4053","pred":"aux","subj":"T5692","obj":"T5693"},{"id":"R4054","pred":"advcl","subj":"T5693","obj":"T5686"},{"id":"R4055","pred":"dobj","subj":"T5694","obj":"T5693"},{"id":"R4056","pred":"punct","subj":"T5695","obj":"T5686"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T5021","span":{"begin":180,"end":188},"obj":"NN"},{"id":"T5020","span":{"begin":172,"end":179},"obj":"VB"},{"id":"T5019","span":{"begin":169,"end":171},"obj":"TO"},{"id":"T5018","span":{"begin":163,"end":168},"obj":"JJ"},{"id":"T5017","span":{"begin":158,"end":162},"obj":"NN"},{"id":"T5016","span":{"begin":155,"end":157},"obj":"IN"},{"id":"T5015","span":{"begin":149,"end":154},"obj":"NN"},{"id":"T5014","span":{"begin":137,"end":148},"obj":"NN"},{"id":"T5013","span":{"begin":126,"end":136},"obj":"NN"},{"id":"T5012","span":{"begin":124,"end":125},"obj":"NNP"},{"id":"T5011","span":{"begin":118,"end":123},"obj":"NNP"},{"id":"T5010","span":{"begin":114,"end":117},"obj":"NNP"},{"id":"T5009","span":{"begin":110,"end":113},"obj":"DT"},{"id":"T5008","span":{"begin":105,"end":109},"obj":"IN"},{"id":"T5007","span":{"begin":101,"end":104},"obj":"CD"},{"id":"T5006","span":{"begin":98,"end":100},"obj":"TO"},{"id":"T5005","span":{"begin":94,"end":97},"obj":"CD"},{"id":"T5004","span":{"begin":86,"end":93},"obj":"NN"},{"id":"T5003","span":{"begin":77,"end":85},"obj":"NN"},{"id":"T5002","span":{"begin":68,"end":76},"obj":"NN"},{"id":"T5001","span":{"begin":61,"end":67},"obj":"JJ"},{"id":"T5000","span":{"begin":57,"end":60},"obj":"DT"},{"id":"T4999","span":{"begin":48,"end":56},"obj":"VB"},{"id":"T4998","span":{"begin":45,"end":47},"obj":"TO"},{"id":"T4997","span":{"begin":40,"end":44},"obj":"VB"},{"id":"T4996","span":{"begin":35,"end":39},"obj":"VB"},{"id":"T4995","span":{"begin":27,"end":34},"obj":"NN"},{"id":"T4994","span":{"begin":23,"end":26},"obj":"CC"},{"id":"T4993","span":{"begin":16,"end":22},"obj":"NN"},{"id":"T4992","span":{"begin":8,"end":15},"obj":"NN"},{"id":"T4991","span":{"begin":4,"end":7},"obj":"NN"},{"id":"T4990","span":{"begin":0,"end":3},"obj":"DT"}],"relations":[{"id":"R3623","pred":"arg1Of","subj":"T4993","obj":"T4994"},{"id":"R3624","pred":"arg1Of","subj":"T4994","obj":"T4990"},{"id":"R3625","pred":"arg1Of","subj":"T4994","obj":"T4991"},{"id":"R3626","pred":"arg1Of","subj":"T4994","obj":"T4992"},{"id":"R3627","pred":"arg1Of","subj":"T4994","obj":"T4996"},{"id":"R3628","pred":"arg2Of","subj":"T4994","obj":"T4997"},{"id":"R3629","pred":"arg2Of","subj":"T4995","obj":"T4994"},{"id":"R3630","pred":"arg2Of","subj":"T4997","obj":"T4996"},{"id":"R3631","pred":"arg3Of","subj":"T4999","obj":"T4997"},{"id":"R3632","pred":"arg1Of","subj":"T4999","obj":"T4998"},{"id":"R3633","pred":"arg1Of","subj":"T4999","obj":"T5006"},{"id":"R3634","pred":"arg1Of","subj":"T4999","obj":"T5008"},{"id":"R3635","pred":"arg2Of","subj":"T5004","obj":"T4999"},{"id":"R3636","pred":"arg1Of","subj":"T5004","obj":"T5000"},{"id":"R3637","pred":"arg1Of","subj":"T5004","obj":"T5001"},{"id":"R3638","pred":"arg1Of","subj":"T5004","obj":"T5002"},{"id":"R3639","pred":"arg1Of","subj":"T5004","obj":"T5003"},{"id":"R3640","pred":"arg1Of","subj":"T5004","obj":"T5005"},{"id":"R3641","pred":"arg2Of","subj":"T5007","obj":"T5006"},{"id":"R3642","pred":"arg1Of","subj":"T5012","obj":"T5010"},{"id":"R3643","pred":"arg1Of","subj":"T5012","obj":"T5011"},{"id":"R3644","pred":"arg1Of","subj":"T5015","obj":"T5013"},{"id":"R3645","pred":"arg1Of","subj":"T5015","obj":"T5014"},{"id":"R3646","pred":"arg1Of","subj":"T5015","obj":"T5016"},{"id":"R3647","pred":"arg2Of","subj":"T5015","obj":"T5020"},{"id":"R3648","pred":"arg2Of","subj":"T5017","obj":"T5016"},{"id":"R3649","pred":"modOf","subj":"T5018","obj":"T5019"},{"id":"R3650","pred":"arg1Of","subj":"T5020","obj":"T5019"},{"id":"R3651","pred":"arg2Of","subj":"T5021","obj":"T5008"},{"id":"R3652","pred":"arg1Of","subj":"T5021","obj":"T5009"},{"id":"R3653","pred":"arg1Of","subj":"T5021","obj":"T5012"},{"id":"R3654","pred":"arg1Of","subj":"T5021","obj":"T5018"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T4795","span":{"begin":68,"end":76},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T5242","span":{"begin":68,"end":76},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    sentences

    {"project":"sentences","denotations":[{"id":"T4745","span":{"begin":0,"end":189},"obj":"Sentence"},{"id":"T61","span":{"begin":0,"end":189},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    simple1

    {"project":"simple1","denotations":[{"id":"T4815","span":{"begin":68,"end":76},"obj":"Protein"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T5232","span":{"begin":68,"end":76},"obj":"Protein"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T5303","span":{"begin":68,"end":76},"obj":"Protein"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T5262","span":{"begin":68,"end":76},"obj":"Protein"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T5477","span":{"begin":57,"end":93},"obj":"Entity"},{"id":"T5437","span":{"begin":163,"end":188},"obj":"Protein"},{"id":"T5417","span":{"begin":4,"end":7},"obj":"Protein"},{"id":"T5416","span":{"begin":68,"end":76},"obj":"Protein"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T5329","span":{"begin":172,"end":179},"obj":"Gene_expression"},{"id":"T5328","span":{"begin":158,"end":162},"obj":"Protein"},{"id":"T5327","span":{"begin":114,"end":125},"obj":"Protein"}],"relations":[{"id":"R3838","pred":"themeOf","subj":"T5328","obj":"T5329"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    testone

    {"project":"testone","denotations":[{"id":"T4698","span":{"begin":172,"end":179},"obj":"Gene_expression"},{"id":"T4690","span":{"begin":68,"end":76},"obj":"Protein"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}

    test3

    {"project":"test3","denotations":[{"id":"T4735","span":{"begin":68,"end":76},"obj":"Protein"},{"id":"T4713","span":{"begin":68,"end":76},"obj":"Protein"}],"text":"The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87."}