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PMC:3589482 / 9959-10148 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5695 188-189 . denotes .
T5694 180-188 NNP denotes pGLmP-87
T5693 172-179 VB denotes produce
T5692 169-171 TO denotes to
T5691 163-168 JJ denotes Basic
T5690 158-162 JJ denotes pGL3
T5689 155-157 IN denotes of
T5688 149-154 NNS denotes sites
T5687 137-148 NN denotes restriction
T5686 126-136 VBP denotes polylinker
T5685 124-125 PRP denotes I
T5684 118-123 NNP denotes I/Xho
T5683 114-117 NNP denotes Kpn
T5682 110-113 DT denotes the
T5681 105-109 IN denotes into
T5680 101-104 CD denotes +92
T5679 98-100 TO denotes to
T5678 95-97 CD denotes 87
T5677 94-95 VBP denotes −
T5676 86-93 NNS denotes regions
T5675 77-85 NN denotes promoter
T5674 68-76 NNP denotes SerpinB2
T5673 61-67 NN denotes murine
T5672 57-60 DT denotes the
T5671 48-56 VB denotes subclone
T5670 45-47 TO denotes to
T5669 40-44 VBN denotes used
T5668 35-39 VBD denotes were
T5667 31-34 NNP denotes LUC
T5666 27-30 NNP denotes DW3
T5665 23-26 CC denotes and
T5664 16-22 NNP denotes BSPCR2
T5663 8-15 NNS denotes primers
T5662 4-7 NNP denotes PCR
T5661 0-3 DT denotes The
R4022 T5661 T5663 det The,primers
R4023 T5662 T5663 compound PCR,primers
R4024 T5663 T5669 nsubjpass primers,used
R4025 T5664 T5663 appos BSPCR2,primers
R4026 T5665 T5664 cc and,BSPCR2
R4027 T5666 T5667 poss DW3,LUC
R4028 T5667 T5664 conj LUC,BSPCR2
R4029 T5668 T5669 auxpass were,used
R4030 T5669 T5669 ROOT used,used
R4031 T5670 T5671 aux to,subclone
R4032 T5671 T5669 xcomp subclone,used
R4033 T5672 T5676 det the,regions
R4034 T5673 T5676 amod murine,regions
R4035 T5674 T5675 compound SerpinB2,promoter
R4036 T5675 T5676 compound promoter,regions
R4037 T5676 T5671 dobj regions,subclone
R4038 T5677 T5671 conj −,subclone
R4039 T5678 T5680 quantmod 87,+92
R4040 T5679 T5680 quantmod to,+92
R4041 T5680 T5677 dobj +92,−
R4042 T5681 T5677 prep into,−
R4043 T5682 T5684 det the,I/Xho
R4044 T5683 T5684 compound Kpn,I/Xho
R4045 T5684 T5681 pobj I/Xho,into
R4046 T5685 T5686 nsubj I,polylinker
R4047 T5686 T5669 conj polylinker,used
R4048 T5687 T5688 compound restriction,sites
R4049 T5688 T5686 dobj sites,polylinker
R4050 T5689 T5688 prep of,sites
R4051 T5690 T5691 amod pGL3,Basic
R4052 T5691 T5689 pobj Basic,of
R4053 T5692 T5693 aux to,produce
R4054 T5693 T5686 advcl produce,polylinker
R4055 T5694 T5693 dobj pGLmP-87,produce
R4056 T5695 T5686 punct .,polylinker

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5021 180-188 NN denotes pGLmP-87
T5020 172-179 VB denotes produce
T5019 169-171 TO denotes to
T5018 163-168 JJ denotes Basic
T5017 158-162 NN denotes pGL3
T5016 155-157 IN denotes of
T5015 149-154 NN denotes sites
T5014 137-148 NN denotes restriction
T5013 126-136 NN denotes polylinker
T5012 124-125 NNP denotes I
T5011 118-123 NNP denotes I/Xho
T5010 114-117 NNP denotes Kpn
T5009 110-113 DT denotes the
T5008 105-109 IN denotes into
T5007 101-104 CD denotes +92
T5006 98-100 TO denotes to
T5005 94-97 CD denotes −87
T5004 86-93 NN denotes regions
T5003 77-85 NN denotes promoter
T5002 68-76 NN denotes SerpinB2
T5001 61-67 JJ denotes murine
T5000 57-60 DT denotes the
T4999 48-56 VB denotes subclone
T4998 45-47 TO denotes to
T4997 40-44 VB denotes used
T4996 35-39 VB denotes were
T4995 27-34 NN denotes DW3’LUC
T4994 23-26 CC denotes and
T4993 16-22 NN denotes BSPCR2
T4992 8-15 NN denotes primers
T4991 4-7 NN denotes PCR
T4990 0-3 DT denotes The
R3623 T4993 T4994 arg1Of BSPCR2,and
R3624 T4994 T4990 arg1Of and,The
R3625 T4994 T4991 arg1Of and,PCR
R3626 T4994 T4992 arg1Of and,primers
R3627 T4994 T4996 arg1Of and,were
R3628 T4994 T4997 arg2Of and,used
R3629 T4995 T4994 arg2Of DW3’LUC,and
R3630 T4997 T4996 arg2Of used,were
R3631 T4999 T4997 arg3Of subclone,used
R3632 T4999 T4998 arg1Of subclone,to
R3633 T4999 T5006 arg1Of subclone,to
R3634 T4999 T5008 arg1Of subclone,into
R3635 T5004 T4999 arg2Of regions,subclone
R3636 T5004 T5000 arg1Of regions,the
R3637 T5004 T5001 arg1Of regions,murine
R3638 T5004 T5002 arg1Of regions,SerpinB2
R3639 T5004 T5003 arg1Of regions,promoter
R3640 T5004 T5005 arg1Of regions,−87
R3641 T5007 T5006 arg2Of +92,to
R3642 T5012 T5010 arg1Of I,Kpn
R3643 T5012 T5011 arg1Of I,I/Xho
R3644 T5015 T5013 arg1Of sites,polylinker
R3645 T5015 T5014 arg1Of sites,restriction
R3646 T5015 T5016 arg1Of sites,of
R3647 T5015 T5020 arg2Of sites,produce
R3648 T5017 T5016 arg2Of pGL3,of
R3649 T5018 T5019 modOf Basic,to
R3650 T5020 T5019 arg1Of produce,to
R3651 T5021 T5008 arg2Of pGLmP-87,into
R3652 T5021 T5009 arg1Of pGLmP-87,the
R3653 T5021 T5012 arg1Of pGLmP-87,I
R3654 T5021 T5018 arg1Of pGLmP-87,Basic

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4795 68-76 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5242 68-76 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T4745 0-189 Sentence denotes The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87.
T61 0-189 Sentence denotes The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87.

simple1

Id Subject Object Predicate Lexical cue
T4815 68-76 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T5232 68-76 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T5303 68-76 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T5262 68-76 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T5477 57-93 Entity denotes the murine SerpinB2 promoter regions
T5437 163-188 Protein denotes Basic to produce pGLmP-87
T5417 4-7 Protein denotes PCR
T5416 68-76 Protein denotes SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T5329 172-179 Gene_expression denotes produce
T5328 158-162 Protein denotes pGL3
T5327 114-125 Protein denotes Kpn I/Xho I
R3838 T5328 T5329 themeOf pGL3,produce

testone

Id Subject Object Predicate Lexical cue
T4698 172-179 Gene_expression denotes produce
T4690 68-76 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T4735 68-76 Protein denotes SerpinB2
T4713 68-76 Protein denotes SerpinB2