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PMC:3589482 / 9089-10199 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5706 1109-1110 . denotes .
T5705 1108-1109 -RRB- denotes )
T5704 1101-1108 NNP denotes Promega
T5703 1100-1101 -LRB- denotes (
T5702 1094-1099 JJ denotes Basic
T5701 1089-1093 JJ denotes pGL3
T5700 1085-1088 VBD denotes was
T5699 1078-1084 NN denotes vector
T5698 1072-1077 JJ denotes empty
T5697 1064-1071 NN denotes control
T5696 1060-1063 DT denotes The
T5695 1058-1059 . denotes .
T5694 1050-1058 NNP denotes pGLmP-87
T5693 1042-1049 VB denotes produce
T5692 1039-1041 TO denotes to
T5691 1033-1038 JJ denotes Basic
T5690 1028-1032 JJ denotes pGL3
T5689 1025-1027 IN denotes of
T5688 1019-1024 NNS denotes sites
T5687 1007-1018 NN denotes restriction
T5686 996-1006 VBP denotes polylinker
T5685 994-995 PRP denotes I
T5684 988-993 NNP denotes I/Xho
T5683 984-987 NNP denotes Kpn
T5682 980-983 DT denotes the
T5681 975-979 IN denotes into
T5680 971-974 CD denotes +92
T5679 968-970 TO denotes to
T5678 965-967 CD denotes 87
T5677 964-965 VBP denotes −
T5676 956-963 NNS denotes regions
T5675 947-955 NN denotes promoter
T5674 938-946 NNP denotes SerpinB2
T5673 931-937 NN denotes murine
T5672 927-930 DT denotes the
T5671 918-926 VB denotes subclone
T5670 915-917 TO denotes to
T5669 910-914 VBN denotes used
T5668 905-909 VBD denotes were
T5667 901-904 NNP denotes LUC
T5666 897-900 NNP denotes DW3
T5665 893-896 CC denotes and
T5664 886-892 NNP denotes BSPCR2
T5663 878-885 NNS denotes primers
T5662 874-877 NNP denotes PCR
T5661 870-873 DT denotes The
T5660 868-869 . denotes .
T5659 862-868 NN denotes ligase
T5658 858-861 NNP denotes DNA
T5657 855-857 CD denotes T4
T5656 850-854 IN denotes with
T5655 845-849 VBZ denotes ends
T5654 838-844 NN denotes vector
T5653 834-837 DT denotes the
T5652 822-833 VBG denotes re-ligating
T5651 818-821 CC denotes and
T5650 816-817 -RRB- denotes )
T5649 813-816 NNP denotes NEB
T5648 812-813 -LRB- denotes (
T5647 801-811 NN denotes polymerase
T5646 797-800 NNP denotes DNA
T5645 794-796 CD denotes T4
T5644 789-793 IN denotes with
T5643 779-788 NNS denotes overhangs
T5642 777-778 NN denotes ′
T5641 776-777 CD denotes 3
T5640 773-775 CC denotes or
T5639 771-772 NN denotes ′
T5638 770-771 CD denotes 5
T5637 760-769 JJ denotes resultant
T5636 756-759 DT denotes the
T5635 749-755 VBG denotes ending
T5634 743-748 JJ denotes blunt
T5633 741-742 , denotes ,
T5632 740-741 -RRB- denotes )
T5631 728-740 RB denotes respectively
T5630 726-727 PRP denotes I
T5629 722-725 NNP denotes Apo
T5628 718-721 CC denotes and
T5627 714-717 NNP denotes III
T5626 710-713 NNP denotes Hae
T5625 708-709 , denotes ,
T5624 707-708 PRP denotes I
T5623 703-706 NNP denotes Pac
T5622 701-702 , denotes ,
T5621 700-701 PRP denotes I
T5620 694-699 NNP denotes Bsu36
T5619 692-693 , denotes ,
T5618 691-692 PRP denotes I
T5617 686-690 NNP denotes BstX
T5616 684-685 , denotes ,
T5615 683-684 PRP denotes I
T5614 679-682 NNP denotes Apa
T5613 677-678 , denotes ,
T5612 676-677 PRP denotes I
T5611 672-675 FW denotes Sfi
T5610 671-672 -LRB- denotes (
T5609 664-670 NN denotes enzyme
T5608 652-663 NN denotes restriction
T5607 645-651 JJ denotes second
T5606 643-644 DT denotes a
T5605 639-642 CC denotes and
T5604 637-638 PRP denotes I
T5603 632-636 NNP denotes EcoR
T5602 627-631 IN denotes with
T5601 616-626 NN denotes pGLmP-3261
T5600 606-615 VBG denotes digesting
T5599 603-605 IN denotes by
T5598 593-602 VBN denotes generated
T5597 588-592 VBD denotes were
T5596 586-587 -RRB- denotes )
T5595 577-586 NN denotes pGLmP-189
T5594 573-576 CC denotes and
T5593 563-572 NN denotes pGLmP-539
T5592 561-562 , denotes ,
T5591 552-561 NN denotes pGLmP-694
T5590 550-551 , denotes ,
T5589 540-550 NN denotes pGLmP-1341
T5588 538-539 , denotes ,
T5587 528-538 NN denotes pGLmP-1686
T5586 526-527 , denotes ,
T5585 516-526 NN denotes pGLmP-2614
T5584 514-515 , denotes ,
T5583 504-514 NN denotes pGLmP-2751
T5582 503-504 -LRB- denotes (
T5581 492-502 NNS denotes constructs
T5580 483-491 NN denotes reporter
T5579 472-482 NN denotes luciferase
T5578 463-471 NNP denotes SerpinB2
T5577 456-462 NN denotes murine
T5576 445-455 JJ denotes Additional
T5575 443-444 . denotes .
T5574 433-443 NN denotes pGLmP-4480
T5573 425-432 VB denotes produce
T5572 422-424 TO denotes to
T5571 411-421 NN denotes pGLmP-3261
T5570 408-410 IN denotes of
T5569 406-407 -RRB- denotes )
T5568 402-406 CD denotes 3261
T5567 401-402 FW denotes −
T5566 400-401 -LRB- denotes (
T5565 395-399 NN denotes site
T5564 393-394 PRP denotes I
T5563 388-392 NNP denotes EcoR
T5562 379-387 NN denotes promoter
T5561 370-378 NNP denotes SerpinB2
T5560 366-369 DT denotes the
T5559 363-365 IN denotes of
T5558 354-362 RB denotes upstream
T5557 342-353 RB denotes immediately
T5556 331-341 JJ denotes sub-cloned
T5555 327-330 VBD denotes was
T5554 316-326 NN denotes pDB9402-42
T5553 313-315 IN denotes of
T5552 306-312 VBP denotes insert
T5551 304-305 PRP denotes I
T5550 299-303 NNP denotes EcoR
T5549 295-298 DT denotes The
T5548 293-294 . denotes .
T5547 283-293 NN denotes pGLmP-3261
T5546 275-282 VB denotes produce
T5545 272-274 TO denotes to
T5544 270-271 -RRB- denotes )
T5543 263-270 NNP denotes Promega
T5542 262-263 -LRB- denotes (
T5541 256-261 NNP denotes Basic
T5540 251-255 NNP denotes pGL3
T5539 248-250 IN denotes of
T5538 242-247 NNS denotes sites
T5537 230-241 NN denotes restriction
T5536 219-229 VBP denotes polylinker
T5535 217-218 PRP denotes I
T5534 211-216 NNP denotes I/Xho
T5533 207-210 NNP denotes Kpn
T5532 203-206 DT denotes the
T5531 198-202 IN denotes into
T5530 190-197 NNP denotes pDB9406
T5529 185-189 IN denotes from
T5528 183-184 -RRB- denotes )
T5527 180-183 CD denotes +92
T5526 177-179 TO denotes to
T5525 172-176 CD denotes 3261
T5524 171-172 FW denotes −
T5523 170-171 -LRB- denotes (
T5522 161-169 NN denotes promoter
T5521 152-160 NNP denotes SerpinB2
T5520 148-151 DT denotes the
T5519 142-147 VB denotes clone
T5518 138-141 CC denotes and
T5517 130-137 VB denotes amplify
T5516 126-129 NNP denotes PCR
T5515 123-125 TO denotes to
T5514 118-122 VBN denotes used
T5513 113-117 VBD denotes were
T5512 111-112 , denotes ,
T5511 107-111 NN denotes site
T5510 95-106 NN denotes restriction
T5509 93-94 PRP denotes I
T5508 89-92 NNP denotes Xho
T5507 86-88 DT denotes an
T5506 75-85 VBG denotes containing
T5505 73-74 , denotes ,
T5504 70-73 NNP denotes LUC
T5503 66-69 NNP denotes DW3
T5502 62-65 CC denotes and
T5501 60-61 , denotes ,
T5500 56-60 NN denotes site
T5499 44-55 NN denotes restriction
T5498 42-43 PRP denotes I
T5497 38-41 NNP denotes Kpn
T5496 36-37 DT denotes a
T5495 25-35 VBG denotes containing
T5494 23-24 , denotes ,
T5493 20-23 NNP denotes LUC
T5492 16-19 NNP denotes DW5
T5491 8-15 VBZ denotes primers
T5490 4-7 NNP denotes PCR
T5489 0-3 NNP denotes The
R3850 T5489 T5490 det The,PCR
R3851 T5490 T5491 nsubj PCR,primers
R3852 T5491 T5491 ROOT primers,primers
R3853 T5492 T5493 poss DW5,LUC
R3854 T5493 T5491 dobj LUC,primers
R3855 T5494 T5491 punct ",",primers
R3856 T5495 T5491 advcl containing,primers
R3857 T5496 T5497 det a,Kpn
R3858 T5497 T5500 compound Kpn,site
R3859 T5498 T5500 compound I,site
R3860 T5499 T5500 compound restriction,site
R3861 T5500 T5495 dobj site,containing
R3862 T5501 T5491 punct ",",primers
R3863 T5502 T5491 cc and,primers
R3864 T5503 T5504 poss DW3,LUC
R3865 T5504 T5514 nsubj LUC,used
R3866 T5505 T5514 punct ",",used
R3867 T5506 T5514 advcl containing,used
R3868 T5507 T5508 det an,Xho
R3869 T5508 T5511 compound Xho,site
R3870 T5509 T5511 compound I,site
R3871 T5510 T5511 compound restriction,site
R3872 T5511 T5506 dobj site,containing
R3873 T5512 T5514 punct ",",used
R3874 T5513 T5514 auxpass were,used
R3875 T5514 T5491 conj used,primers
R3876 T5515 T5517 aux to,amplify
R3877 T5516 T5517 nsubj PCR,amplify
R3878 T5517 T5514 xcomp amplify,used
R3879 T5518 T5517 cc and,amplify
R3880 T5519 T5517 conj clone,amplify
R3881 T5520 T5522 det the,promoter
R3882 T5521 T5522 compound SerpinB2,promoter
R3883 T5522 T5519 dobj promoter,clone
R3884 T5523 T5522 punct (,promoter
R3885 T5524 T5522 appos −,promoter
R3886 T5525 T5522 appos 3261,promoter
R3887 T5526 T5525 prep to,3261
R3888 T5527 T5526 pobj +92,to
R3889 T5528 T5525 punct ),3261
R3890 T5529 T5519 prep from,clone
R3891 T5530 T5529 pobj pDB9406,from
R3892 T5531 T5519 prep into,clone
R3893 T5532 T5534 det the,I/Xho
R3894 T5533 T5534 compound Kpn,I/Xho
R3895 T5534 T5531 pobj I/Xho,into
R3896 T5535 T5536 nsubj I,polylinker
R3897 T5536 T5514 conj polylinker,used
R3898 T5537 T5538 compound restriction,sites
R3899 T5538 T5536 dobj sites,polylinker
R3900 T5539 T5538 prep of,sites
R3901 T5540 T5541 compound pGL3,Basic
R3902 T5541 T5539 pobj Basic,of
R3903 T5542 T5541 punct (,Basic
R3904 T5543 T5541 appos Promega,Basic
R3905 T5544 T5541 punct ),Basic
R3906 T5545 T5546 aux to,produce
R3907 T5546 T5536 advcl produce,polylinker
R3908 T5547 T5546 dobj pGLmP-3261,produce
R3909 T5548 T5536 punct .,polylinker
R3910 T5549 T5550 det The,EcoR
R3911 T5550 T5555 nsubj EcoR,was
R3912 T5551 T5552 nsubj I,insert
R3913 T5552 T5550 relcl insert,EcoR
R3914 T5553 T5552 prep of,insert
R3915 T5554 T5553 pobj pDB9402-42,of
R3916 T5555 T5555 ROOT was,was
R3917 T5556 T5555 acomp sub-cloned,was
R3918 T5557 T5558 advmod immediately,upstream
R3919 T5558 T5555 prep upstream,was
R3920 T5559 T5558 prep of,upstream
R3921 T5560 T5562 det the,promoter
R3922 T5561 T5562 compound SerpinB2,promoter
R3923 T5562 T5565 compound promoter,site
R3924 T5563 T5565 compound EcoR,site
R3925 T5564 T5565 compound I,site
R3926 T5565 T5559 pobj site,of
R3927 T5566 T5567 punct (,−
R3928 T5567 T5568 nmod −,3261
R3929 T5568 T5565 appos 3261,site
R3930 T5569 T5565 punct ),site
R3931 T5570 T5565 prep of,site
R3932 T5571 T5570 pobj pGLmP-3261,of
R3933 T5572 T5573 aux to,produce
R3934 T5573 T5555 advcl produce,was
R3935 T5574 T5573 dobj pGLmP-4480,produce
R3936 T5575 T5555 punct .,was
R3937 T5576 T5581 amod Additional,constructs
R3938 T5577 T5580 amod murine,reporter
R3939 T5578 T5580 compound SerpinB2,reporter
R3940 T5579 T5580 compound luciferase,reporter
R3941 T5580 T5581 compound reporter,constructs
R3942 T5581 T5598 nsubjpass constructs,generated
R3943 T5582 T5581 punct (,constructs
R3944 T5583 T5581 appos pGLmP-2751,constructs
R3945 T5584 T5583 punct ",",pGLmP-2751
R3946 T5585 T5583 conj pGLmP-2614,pGLmP-2751
R3947 T5586 T5585 punct ",",pGLmP-2614
R3948 T5587 T5585 conj pGLmP-1686,pGLmP-2614
R3949 T5588 T5587 punct ",",pGLmP-1686
R3950 T5589 T5587 conj pGLmP-1341,pGLmP-1686
R3951 T5590 T5589 punct ",",pGLmP-1341
R3952 T5591 T5589 conj pGLmP-694,pGLmP-1341
R3953 T5592 T5591 punct ",",pGLmP-694
R3954 T5593 T5591 conj pGLmP-539,pGLmP-694
R3955 T5594 T5593 cc and,pGLmP-539
R3956 T5595 T5593 conj pGLmP-189,pGLmP-539
R3957 T5596 T5581 punct ),constructs
R3958 T5597 T5598 auxpass were,generated
R3959 T5598 T5598 ROOT generated,generated
R3960 T5599 T5598 prep by,generated
R3961 T5600 T5599 pcomp digesting,by
R3962 T5601 T5600 dobj pGLmP-3261,digesting
R3963 T5602 T5600 prep with,digesting
R3964 T5603 T5602 pobj EcoR,with
R3965 T5604 T5614 dep I,Apa
R3966 T5605 T5604 cc and,I
R3967 T5606 T5609 det a,enzyme
R3968 T5607 T5608 amod second,restriction
R3969 T5608 T5609 compound restriction,enzyme
R3970 T5609 T5604 conj enzyme,I
R3971 T5610 T5609 punct (,enzyme
R3972 T5611 T5609 parataxis Sfi,enzyme
R3973 T5612 T5614 nsubj I,Apa
R3974 T5613 T5614 punct ",",Apa
R3975 T5614 T5614 ROOT Apa,Apa
R3976 T5615 T5617 nsubj I,BstX
R3977 T5616 T5615 punct ",",I
R3978 T5617 T5617 ROOT BstX,BstX
R3979 T5618 T5620 nsubj I,Bsu36
R3980 T5619 T5618 punct ",",I
R3981 T5620 T5620 ROOT Bsu36,Bsu36
R3982 T5621 T5623 nsubj I,Pac
R3983 T5622 T5621 punct ",",I
R3984 T5623 T5623 ROOT Pac,Pac
R3985 T5624 T5624 ROOT I,I
R3986 T5625 T5624 punct ",",I
R3987 T5626 T5627 compound Hae,III
R3988 T5627 T5624 appos III,I
R3989 T5628 T5627 cc and,III
R3990 T5629 T5627 conj Apo,III
R3991 T5630 T5624 appos I,I
R3992 T5631 T5624 appos respectively,I
R3993 T5632 T5624 punct ),I
R3994 T5633 T5652 punct ",",re-ligating
R3995 T5634 T5652 dep blunt,re-ligating
R3996 T5635 T5634 acl ending,blunt
R3997 T5636 T5639 det the,′
R3998 T5637 T5639 amod resultant,′
R3999 T5638 T5639 nummod 5,′
R4000 T5639 T5635 dobj ′,ending
R4001 T5640 T5639 cc or,′
R4002 T5641 T5642 nummod 3,′
R4003 T5642 T5643 compound ′,overhangs
R4004 T5643 T5639 conj overhangs,′
R4005 T5644 T5643 prep with,overhangs
R4006 T5645 T5647 amod T4,polymerase
R4007 T5646 T5647 compound DNA,polymerase
R4008 T5647 T5644 pobj polymerase,with
R4009 T5648 T5647 punct (,polymerase
R4010 T5649 T5647 appos NEB,polymerase
R4011 T5650 T5647 punct ),polymerase
R4012 T5651 T5643 cc and,overhangs
R4013 T5652 T5652 ROOT re-ligating,re-ligating
R4014 T5653 T5654 det the,vector
R4015 T5654 T5652 dobj vector,re-ligating
R4016 T5655 T5652 dep ends,re-ligating
R4017 T5656 T5655 prep with,ends
R4018 T5657 T5659 amod T4,ligase
R4019 T5658 T5659 compound DNA,ligase
R4020 T5659 T5656 pobj ligase,with
R4021 T5660 T5652 punct .,re-ligating
R4022 T5661 T5663 det The,primers
R4023 T5662 T5663 compound PCR,primers
R4024 T5663 T5669 nsubjpass primers,used
R4025 T5664 T5663 appos BSPCR2,primers
R4026 T5665 T5664 cc and,BSPCR2
R4027 T5666 T5667 poss DW3,LUC
R4028 T5667 T5664 conj LUC,BSPCR2
R4029 T5668 T5669 auxpass were,used
R4030 T5669 T5669 ROOT used,used
R4031 T5670 T5671 aux to,subclone
R4032 T5671 T5669 xcomp subclone,used
R4033 T5672 T5676 det the,regions
R4034 T5673 T5676 amod murine,regions
R4035 T5674 T5675 compound SerpinB2,promoter
R4036 T5675 T5676 compound promoter,regions
R4037 T5676 T5671 dobj regions,subclone
R4038 T5677 T5671 conj −,subclone
R4039 T5678 T5680 quantmod 87,+92
R4040 T5679 T5680 quantmod to,+92
R4041 T5680 T5677 dobj +92,−
R4042 T5681 T5677 prep into,−
R4043 T5682 T5684 det the,I/Xho
R4044 T5683 T5684 compound Kpn,I/Xho
R4045 T5684 T5681 pobj I/Xho,into
R4046 T5685 T5686 nsubj I,polylinker
R4047 T5686 T5669 conj polylinker,used
R4048 T5687 T5688 compound restriction,sites
R4049 T5688 T5686 dobj sites,polylinker
R4050 T5689 T5688 prep of,sites
R4051 T5690 T5691 amod pGL3,Basic
R4052 T5691 T5689 pobj Basic,of
R4053 T5692 T5693 aux to,produce
R4054 T5693 T5686 advcl produce,polylinker
R4055 T5694 T5693 dobj pGLmP-87,produce
R4056 T5695 T5686 punct .,polylinker
R4057 T5696 T5699 det The,vector
R4058 T5697 T5699 nmod control,vector
R4059 T5698 T5699 amod empty,vector
R4060 T5699 T5700 nsubj vector,was
R4061 T5700 T5700 ROOT was,was
R4062 T5701 T5702 amod pGL3,Basic
R4063 T5702 T5700 attr Basic,was
R4064 T5703 T5704 punct (,Promega
R4065 T5704 T5702 appos Promega,Basic
R4066 T5705 T5704 punct ),Promega
R4067 T5706 T5700 punct .,was

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5031 1108-1109 -RRB- denotes )
T5030 1101-1108 NNP denotes Promega
T5029 1100-1101 -LRB- denotes (
T5028 1094-1099 JJ denotes Basic
T5027 1089-1093 NN denotes pGL3
T5026 1085-1088 VB denotes was
T5025 1078-1084 NN denotes vector
T5024 1072-1077 JJ denotes empty
T5023 1064-1071 NN denotes control
T5022 1060-1063 DT denotes The
T5021 1050-1058 NN denotes pGLmP-87
T5020 1042-1049 VB denotes produce
T5019 1039-1041 TO denotes to
T5018 1033-1038 JJ denotes Basic
T5017 1028-1032 NN denotes pGL3
T5016 1025-1027 IN denotes of
T5015 1019-1024 NN denotes sites
T5014 1007-1018 NN denotes restriction
T5013 996-1006 NN denotes polylinker
T5012 994-995 NNP denotes I
T5011 988-993 NNP denotes I/Xho
T5010 984-987 NNP denotes Kpn
T5009 980-983 DT denotes the
T5008 975-979 IN denotes into
T5007 971-974 CD denotes +92
T5006 968-970 TO denotes to
T5005 964-967 CD denotes −87
T5004 956-963 NN denotes regions
T5003 947-955 NN denotes promoter
T5002 938-946 NN denotes SerpinB2
T5001 931-937 JJ denotes murine
T5000 927-930 DT denotes the
T4999 918-926 VB denotes subclone
T4998 915-917 TO denotes to
T4997 910-914 VB denotes used
T4996 905-909 VB denotes were
T4995 897-904 NN denotes DW3’LUC
T4994 893-896 CC denotes and
T4993 886-892 NN denotes BSPCR2
T4992 878-885 NN denotes primers
T4991 874-877 NN denotes PCR
T4990 870-873 DT denotes The
T4989 862-868 NN denotes ligase
T4988 858-861 NN denotes DNA
T4987 855-857 NN denotes T4
T4986 850-854 IN denotes with
T4985 845-849 VB denotes ends
T4984 838-844 NN denotes vector
T4983 834-837 DT denotes the
T4982 822-833 VB denotes re-ligating
T4981 818-821 CC denotes and
T4980 816-817 -RRB- denotes )
T4979 813-816 NN denotes NEB
T4978 812-813 -LRB- denotes (
T4977 801-811 NN denotes polymerase
T4976 797-800 NN denotes DNA
T4975 794-796 NN denotes T4
T4974 789-793 IN denotes with
T4973 779-788 NN denotes overhangs
T4972 776-778 CD denotes 3′
T4971 773-775 CC denotes or
T4970 770-772 CD denotes 5′
T4969 760-769 JJ denotes resultant
T4968 756-759 DT denotes the
T4967 749-755 VB denotes ending
T4966 743-748 NN denotes blunt
T4965 741-742 -COMMA- denotes ,
T4964 740-741 -RRB- denotes )
T4963 728-740 RB denotes respectively
T4962 726-727 PRP denotes I
T4961 722-725 NNP denotes Apo
T4960 718-721 CC denotes and
T4959 714-717 NNP denotes III
T4958 710-713 NNP denotes Hae
T4957 708-709 -COMMA- denotes ,
T4956 707-708 NNP denotes I
T4955 703-706 NNP denotes Pac
T4954 701-702 -COMMA- denotes ,
T4953 700-701 NNP denotes I
T4952 694-699 NN denotes Bsu36
T4951 692-693 -COMMA- denotes ,
T4950 691-692 NNP denotes I
T4949 686-690 NNP denotes BstX
T4948 684-685 -COMMA- denotes ,
T4947 683-684 NNP denotes I
T4946 679-682 NNP denotes Apa
T4945 677-678 -COMMA- denotes ,
T4944 676-677 NNP denotes I
T4943 672-675 NNP denotes Sfi
T4942 671-672 -LRB- denotes (
T4941 664-670 NN denotes enzyme
T4940 652-663 NN denotes restriction
T4939 645-651 JJ denotes second
T4938 643-644 DT denotes a
T4937 639-642 CC denotes and
T4936 637-638 CD denotes I
T4935 632-636 NN denotes EcoR
T4934 627-631 IN denotes with
T4933 616-626 NN denotes pGLmP-3261
T4932 606-615 VB denotes digesting
T4931 603-605 IN denotes by
T4930 593-602 VB denotes generated
T4929 588-592 VB denotes were
T4928 586-587 -RRB- denotes )
T4927 577-586 NN denotes pGLmP-189
T4926 573-576 CC denotes and
T4925 563-572 NN denotes pGLmP-539
T4924 561-562 -COMMA- denotes ,
T4923 552-561 NN denotes pGLmP-694
T4922 550-551 -COMMA- denotes ,
T4921 540-550 NN denotes pGLmP-1341
T4920 538-539 -COMMA- denotes ,
T4919 528-538 NN denotes pGLmP-1686
T4918 526-527 -COMMA- denotes ,
T4917 516-526 NN denotes pGLmP-2614
T4916 514-515 -COMMA- denotes ,
T4915 504-514 NN denotes pGLmP-2751
T4914 503-504 -LRB- denotes (
T4913 492-502 NN denotes constructs
T4912 483-491 NN denotes reporter
T4911 472-482 NN denotes luciferase
T4910 463-471 NN denotes SerpinB2
T4909 456-462 JJ denotes murine
T4908 445-455 JJ denotes Additional
T4907 433-443 NN denotes pGLmP-4480
T4906 425-432 VB denotes produce
T4905 422-424 TO denotes to
T4904 411-421 NN denotes pGLmP-3261
T4903 408-410 IN denotes of
T4902 406-407 -RRB- denotes )
T4901 401-406 NN denotes −3261
T4900 400-401 -LRB- denotes (
T4899 395-399 NN denotes site
T4898 393-394 NN denotes I
T4897 388-392 NN denotes EcoR
T4896 379-387 NN denotes promoter
T4895 370-378 NN denotes SerpinB2
T4894 366-369 DT denotes the
T4893 363-365 IN denotes of
T4892 354-362 JJ denotes upstream
T4891 342-353 RB denotes immediately
T4890 331-341 VB denotes sub-cloned
T4889 327-330 VB denotes was
T4888 316-326 NN denotes pDB9402-42
T4887 313-315 IN denotes of
T4886 306-312 NN denotes insert
T4885 304-305 CD denotes I
T4858 161-169 NN denotes promoter
T4857 152-160 NN denotes SerpinB2
T4856 148-151 DT denotes the
T4855 142-147 VB denotes clone
T4854 138-141 CC denotes and
T4853 130-137 VB denotes amplify
T4852 126-129 NN denotes PCR
T4851 123-125 TO denotes to
T4850 118-122 VB denotes used
T4849 113-117 VB denotes were
T4848 111-112 -COMMA- denotes ,
T4847 107-111 NN denotes site
T4846 95-106 NN denotes restriction
T4845 93-94 CD denotes I
T4844 89-92 NN denotes Xho
T4843 86-88 DT denotes an
T4842 75-85 VB denotes containing
T4841 73-74 -COMMA- denotes ,
T4840 66-73 NN denotes DW3’LUC
T4839 62-65 CC denotes and
T4838 60-61 -COMMA- denotes ,
T4837 56-60 NN denotes site
T4836 44-55 NN denotes restriction
T4835 42-43 NN denotes I
T4834 38-41 NN denotes Kpn
T4833 36-37 DT denotes a
T4832 25-35 VB denotes containing
T4831 23-24 -COMMA- denotes ,
T4830 16-23 NN denotes DW5’LUC
T4829 8-15 NN denotes primers
T4828 4-7 NN denotes PCR
T4827 0-3 DT denotes The
T4884 299-303 NN denotes EcoR
T4883 295-298 DT denotes The
T4882 283-293 NN denotes pGLmP-3261
T4881 275-282 VB denotes produce
T4880 272-274 TO denotes to
T4879 270-271 -RRB- denotes )
T4878 263-270 NNP denotes Promega
T4877 262-263 -LRB- denotes (
T4876 256-261 JJ denotes Basic
T4875 251-255 NN denotes pGL3
T4874 248-250 IN denotes of
T4873 242-247 NN denotes sites
T4872 230-241 NN denotes restriction
T4871 219-229 NN denotes polylinker
T4870 217-218 NNP denotes I
T4869 211-216 NNP denotes I/Xho
T4868 207-210 NNP denotes Kpn
T4867 203-206 DT denotes the
T4866 198-202 IN denotes into
T4865 190-197 NN denotes pDB9406
T4864 185-189 IN denotes from
T4863 183-184 -RRB- denotes )
T4862 180-183 CD denotes +92
T4861 177-179 TO denotes to
T4860 171-176 CD denotes −3261
T4859 170-171 -LRB- denotes (
R3455 T4829 T4827 arg1Of primers,The
R3456 T4829 T4828 arg1Of primers,PCR
R3457 T4829 T4853 arg1Of primers,amplify
R3458 T4829 T4855 arg1Of primers,clone
R3459 T4830 T4831 arg1Of DW5’LUC,","
R3460 T4830 T4832 arg1Of DW5’LUC,containing
R3461 T4830 T4839 arg1Of DW5’LUC,and
R3462 T4837 T4832 arg2Of site,containing
R3463 T4837 T4833 arg1Of site,a
R3464 T4837 T4834 arg1Of site,Kpn
R3465 T4837 T4835 arg1Of site,I
R3466 T4837 T4836 arg1Of site,restriction
R3467 T4839 T4838 arg1Of and,","
R3468 T4839 T4841 arg1Of and,","
R3469 T4839 T4842 arg1Of and,containing
R3470 T4839 T4849 arg1Of and,were
R3471 T4839 T4850 arg2Of and,used
R3472 T4840 T4839 arg2Of DW3’LUC,and
R3473 T4847 T4842 arg2Of site,containing
R3474 T4847 T4843 arg1Of site,an
R3475 T4847 T4844 arg1Of site,Xho
R3476 T4847 T4845 arg1Of site,I
R3477 T4847 T4846 arg1Of site,restriction
R3478 T4850 T4848 arg1Of used,","
R3479 T4850 T4849 arg2Of used,were
R3480 T4850 T4851 arg1Of used,to
R3481 T4852 T4851 arg2Of PCR,to
R3482 T4853 T4854 arg1Of amplify,and
R3483 T4854 T4849 modOf and,were
R3484 T4854 T4880 modOf and,to
R3485 T4855 T4854 arg2Of clone,and
R3486 T4858 T4853 arg2Of promoter,amplify
R3487 T4858 T4855 arg2Of promoter,clone
R3488 T4858 T4856 arg1Of promoter,the
R3489 T4858 T4857 arg1Of promoter,SerpinB2
R3490 T4858 T4859 arg1Of promoter,(
R3491 T4858 T4864 arg1Of promoter,from
R3492 T4858 T4866 arg1Of promoter,into
R3493 T4862 T4859 arg2Of +92,(
R3494 T4862 T4860 arg1Of +92,−3261
R3495 T4862 T4861 arg1Of +92,to
R3496 T4863 T4859 arg3Of ),(
R3497 T4865 T4864 arg2Of pDB9406,from
R3498 T4870 T4868 arg1Of I,Kpn
R3499 T4870 T4869 arg1Of I,I/Xho
R3500 T4873 T4866 arg2Of sites,into
R3501 T4873 T4867 arg1Of sites,the
R3502 T4873 T4870 arg1Of sites,I
R3503 T4873 T4871 arg1Of sites,polylinker
R3504 T4873 T4872 arg1Of sites,restriction
R3505 T4873 T4874 arg1Of sites,of
R3506 T4876 T4875 arg1Of Basic,pGL3
R3507 T4878 T4874 arg2Of Promega,of
R3508 T4878 T4876 arg1Of Promega,Basic
R3509 T4878 T4877 arg2Of Promega,(
R3510 T4879 T4877 arg3Of ),(
R3511 T4881 T4880 arg1Of produce,to
R3512 T4882 T4881 arg2Of pGLmP-3261,produce
R3513 T4886 T4883 arg1Of insert,The
R3514 T4886 T4884 arg1Of insert,EcoR
R3515 T4886 T4885 arg1Of insert,I
R3516 T4886 T4887 arg1Of insert,of
R3517 T4886 T4889 arg1Of insert,was
R3518 T4886 T4890 arg2Of insert,sub-cloned
R3519 T4886 T4892 arg1Of insert,upstream
R3520 T4888 T4887 arg2Of pDB9402-42,of
R3521 T4890 T4889 arg2Of sub-cloned,was
R3522 T4892 T4890 arg3Of upstream,sub-cloned
R3523 T4892 T4891 arg1Of upstream,immediately
R3524 T4892 T4893 arg1Of upstream,of
R3525 T4899 T4893 arg2Of site,of
R3526 T4899 T4894 arg1Of site,the
R3527 T4899 T4895 arg1Of site,SerpinB2
R3528 T4899 T4896 arg1Of site,promoter
R3529 T4899 T4897 arg1Of site,EcoR
R3530 T4899 T4898 arg1Of site,I
R3531 T4899 T4900 arg1Of site,(
R3532 T4899 T4903 arg1Of site,of
R3533 T4899 T4905 modOf site,to
R3534 T4901 T4900 arg2Of −3261,(
R3535 T4902 T4900 arg3Of ),(
R3536 T4904 T4903 arg2Of pGLmP-3261,of
R3537 T4906 T4905 arg1Of produce,to
R3538 T4907 T4906 arg2Of pGLmP-4480,produce
R3539 T4913 T4908 arg1Of constructs,Additional
R3540 T4913 T4909 arg1Of constructs,murine
R3541 T4913 T4910 arg1Of constructs,SerpinB2
R3542 T4913 T4911 arg1Of constructs,luciferase
R3543 T4913 T4912 arg1Of constructs,reporter
R3544 T4913 T4914 arg1Of constructs,(
R3545 T4913 T4929 arg1Of constructs,were
R3546 T4913 T4930 arg2Of constructs,generated
R3547 T4915 T4916 arg1Of pGLmP-2751,","
R3548 T4916 T4918 arg1Of ",",","
R3549 T4917 T4916 arg2Of pGLmP-2614,","
R3550 T4918 T4920 arg1Of ",",","
R3551 T4919 T4918 arg2Of pGLmP-1686,","
R3552 T4920 T4922 arg1Of ",",","
R3553 T4921 T4920 arg2Of pGLmP-1341,","
R3554 T4922 T4924 arg1Of ",",","
R3555 T4923 T4922 arg2Of pGLmP-694,","
R3556 T4924 T4926 arg1Of ",",and
R3557 T4925 T4924 arg2Of pGLmP-539,","
R3558 T4926 T4914 arg2Of and,(
R3559 T4927 T4926 arg2Of pGLmP-189,and
R3560 T4928 T4914 arg3Of ),(
R3561 T4930 T4929 arg2Of generated,were
R3562 T4930 T4931 arg1Of generated,by
R3563 T4930 T4965 arg1Of generated,","
R3564 T4932 T4931 arg2Of digesting,by
R3565 T4932 T4942 arg1Of digesting,(
R3566 T4933 T4934 arg1Of pGLmP-3261,with
R3567 T4933 T4937 arg1Of pGLmP-3261,and
R3568 T4935 T4934 arg2Of EcoR,with
R3569 T4935 T4936 arg1Of EcoR,I
R3570 T4937 T4932 arg2Of and,digesting
R3571 T4941 T4937 arg2Of enzyme,and
R3572 T4941 T4938 arg1Of enzyme,a
R3573 T4941 T4939 arg1Of enzyme,second
R3574 T4941 T4940 arg1Of enzyme,restriction
R3575 T4944 T4943 arg1Of I,Sfi
R3576 T4944 T4945 arg1Of I,","
R3577 T4945 T4948 arg1Of ",",","
R3578 T4947 T4945 arg2Of I,","
R3579 T4947 T4946 arg1Of I,Apa
R3580 T4948 T4951 arg1Of ",",","
R3581 T4950 T4948 arg2Of I,","
R3582 T4950 T4949 arg1Of I,BstX
R3583 T4951 T4954 arg1Of ",",","
R3584 T4953 T4951 arg2Of I,","
R3585 T4953 T4952 arg1Of I,Bsu36
R3586 T4954 T4957 arg1Of ",",","
R3587 T4956 T4954 arg2Of I,","
R3588 T4956 T4955 arg1Of I,Pac
R3589 T4957 T4960 arg1Of ",",and
R3590 T4959 T4957 arg2Of III,","
R3591 T4959 T4958 arg1Of III,Hae
R3592 T4960 T4942 arg2Of and,(
R3593 T4962 T4960 arg2Of I,and
R3594 T4962 T4961 arg1Of I,Apo
R3595 T4962 T4963 arg1Of I,respectively
R3596 T4964 T4942 arg3Of ),(
R3597 T4966 T4967 arg1Of blunt,ending
R3598 T4966 T4982 arg1Of blunt,re-ligating
R3599 T4966 T4985 arg1Of blunt,ends
R3600 T4967 T4981 arg1Of ending,and
R3601 T4970 T4971 arg1Of 5′,or
R3602 T4972 T4971 arg2Of 3′,or
R3603 T4973 T4967 arg2Of overhangs,ending
R3604 T4973 T4968 arg1Of overhangs,the
R3605 T4973 T4969 arg1Of overhangs,resultant
R3606 T4973 T4970 arg1Of overhangs,5′
R3607 T4973 T4972 arg1Of overhangs,3′
R3608 T4973 T4974 arg1Of overhangs,with
R3609 T4977 T4974 arg2Of polymerase,with
R3610 T4977 T4975 arg1Of polymerase,T4
R3611 T4977 T4976 arg1Of polymerase,DNA
R3612 T4977 T4978 arg1Of polymerase,(
R3613 T4979 T4978 arg2Of NEB,(
R3614 T4980 T4978 arg3Of ),(
R3615 T4982 T4981 arg2Of re-ligating,and
R3616 T4984 T4982 arg2Of vector,re-ligating
R3617 T4984 T4983 arg1Of vector,the
R3618 T4985 T4965 arg2Of ends,","
R3619 T4985 T4986 arg1Of ends,with
R3620 T4989 T4986 arg2Of ligase,with
R3621 T4989 T4987 arg1Of ligase,T4
R3622 T4989 T4988 arg1Of ligase,DNA
R3623 T4993 T4994 arg1Of BSPCR2,and
R3624 T4994 T4990 arg1Of and,The
R3625 T4994 T4991 arg1Of and,PCR
R3626 T4994 T4992 arg1Of and,primers
R3627 T4994 T4996 arg1Of and,were
R3628 T4994 T4997 arg2Of and,used
R3629 T4995 T4994 arg2Of DW3’LUC,and
R3630 T4997 T4996 arg2Of used,were
R3631 T4999 T4997 arg3Of subclone,used
R3632 T4999 T4998 arg1Of subclone,to
R3633 T4999 T5006 arg1Of subclone,to
R3634 T4999 T5008 arg1Of subclone,into
R3635 T5004 T4999 arg2Of regions,subclone
R3636 T5004 T5000 arg1Of regions,the
R3637 T5004 T5001 arg1Of regions,murine
R3638 T5004 T5002 arg1Of regions,SerpinB2
R3639 T5004 T5003 arg1Of regions,promoter
R3640 T5004 T5005 arg1Of regions,−87
R3641 T5007 T5006 arg2Of +92,to
R3642 T5012 T5010 arg1Of I,Kpn
R3643 T5012 T5011 arg1Of I,I/Xho
R3644 T5015 T5013 arg1Of sites,polylinker
R3645 T5015 T5014 arg1Of sites,restriction
R3646 T5015 T5016 arg1Of sites,of
R3647 T5015 T5020 arg2Of sites,produce
R3648 T5017 T5016 arg2Of pGL3,of
R3649 T5018 T5019 modOf Basic,to
R3650 T5020 T5019 arg1Of produce,to
R3651 T5021 T5008 arg2Of pGLmP-87,into
R3652 T5021 T5009 arg1Of pGLmP-87,the
R3653 T5021 T5012 arg1Of pGLmP-87,I
R3654 T5021 T5018 arg1Of pGLmP-87,Basic
R3655 T5025 T5022 arg1Of vector,The
R3656 T5025 T5023 arg1Of vector,control
R3657 T5025 T5024 arg1Of vector,empty
R3658 T5025 T5026 arg1Of vector,was
R3659 T5028 T5027 arg1Of Basic,pGL3
R3660 T5030 T5026 arg2Of Promega,was
R3661 T5030 T5028 arg1Of Promega,Basic
R3662 T5030 T5029 arg2Of Promega,(
R3663 T5031 T5029 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4782 152-160 Protein denotes SerpinB2
T4795 938-946 Protein denotes SerpinB2
T4794 855-868 Protein denotes T4 DNA ligase
T4793 794-811 Protein denotes T4 DNA polymerase
T4792 722-727 Protein denotes Apo I
T4791 710-717 Protein denotes Hae III
T4790 703-708 Protein denotes Pac I
T4789 694-701 Protein denotes Bsu36 I
T4788 686-692 Protein denotes BstX I
T4787 679-684 Protein denotes Apa I
T4786 672-677 Protein denotes Sfi I
T4785 632-638 Protein denotes EcoR I
T4784 463-491 Protein denotes SerpinB2 luciferase reporter
T4783 370-378 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5245 472-482 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T5242 938-946 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T5241 463-471 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T5240 370-378 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T5239 152-160 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T4746 1060-1110 Sentence denotes The control empty vector was pGL3 Basic (Promega).
T4745 870-1059 Sentence denotes The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87.
T4744 445-869 Sentence denotes Additional murine SerpinB2 luciferase reporter constructs (pGLmP-2751, pGLmP-2614, pGLmP-1686, pGLmP-1341, pGLmP-694, pGLmP-539 and pGLmP-189) were generated by digesting pGLmP-3261 with EcoR I and a second restriction enzyme (Sfi I, Apa I, BstX I, Bsu36 I, Pac I, Hae III and Apo I respectively), blunt ending the resultant 5′ or 3′ overhangs with T4 DNA polymerase (NEB) and re-ligating the vector ends with T4 DNA ligase.
T4743 295-444 Sentence denotes The EcoR I insert of pDB9402-42 was sub-cloned immediately upstream of the SerpinB2 promoter EcoR I site (−3261) of pGLmP-3261 to produce pGLmP-4480.
T4742 0-294 Sentence denotes The PCR primers DW5’LUC, containing a Kpn I restriction site, and DW3’LUC, containing an Xho I restriction site, were used to PCR amplify and clone the SerpinB2 promoter (−3261 to +92) from pDB9406 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic (Promega) to produce pGLmP-3261.
T58 0-294 Sentence denotes The PCR primers DW5’LUC, containing a Kpn I restriction site, and DW3’LUC, containing an Xho I restriction site, were used to PCR amplify and clone the SerpinB2 promoter (−3261 to +92) from pDB9406 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic (Promega) to produce pGLmP-3261.
T59 295-444 Sentence denotes The EcoR I insert of pDB9402-42 was sub-cloned immediately upstream of the SerpinB2 promoter EcoR I site (−3261) of pGLmP-3261 to produce pGLmP-4480.
T60 445-869 Sentence denotes Additional murine SerpinB2 luciferase reporter constructs (pGLmP-2751, pGLmP-2614, pGLmP-1686, pGLmP-1341, pGLmP-694, pGLmP-539 and pGLmP-189) were generated by digesting pGLmP-3261 with EcoR I and a second restriction enzyme (Sfi I, Apa I, BstX I, Bsu36 I, Pac I, Hae III and Apo I respectively), blunt ending the resultant 5′ or 3′ overhangs with T4 DNA polymerase (NEB) and re-ligating the vector ends with T4 DNA ligase.
T61 870-1059 Sentence denotes The PCR primers BSPCR2 and DW3’LUC were used to subclone the murine SerpinB2 promoter regions −87 to +92 into the Kpn I/Xho I polylinker restriction sites of pGL3 Basic to produce pGLmP-87.
T62 1060-1110 Sentence denotes The control empty vector was pGL3 Basic (Promega).

simple1

Id Subject Object Predicate Lexical cue
T4815 938-946 Protein denotes SerpinB2
T4814 855-868 Protein denotes T4 DNA ligase
T4813 794-811 Protein denotes T4 DNA polymerase
T4812 722-727 Protein denotes Apo I
T4811 710-717 Protein denotes Hae III
T4810 703-708 Protein denotes Pac I
T4809 694-701 Protein denotes Bsu36 I
T4808 686-692 Protein denotes BstX I
T4807 679-684 Protein denotes Apa I
T4806 672-677 Protein denotes Sfi I
T4805 632-638 Protein denotes EcoR I
T4804 463-491 Protein denotes SerpinB2 luciferase reporter
T4803 370-378 Protein denotes SerpinB2
T4802 152-160 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T5232 938-946 Protein denotes SerpinB2
T5231 694-701 Protein denotes Bsu36 I
T5230 686-692 Protein denotes BstX I
T5229 679-684 Protein denotes Apa I
T5228 672-677 Protein denotes Sfi I
T5227 632-638 Protein denotes EcoR I
T5226 463-491 Protein denotes SerpinB2 luciferase reporter
T5225 855-868 Protein denotes T4 DNA ligase
T5224 794-811 Protein denotes T4 DNA polymerase
T5223 722-727 Protein denotes Apo I
T5222 710-717 Protein denotes Hae III
T5221 703-708 Protein denotes Pac I
T5220 370-378 Protein denotes SerpinB2
T5219 152-160 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T5303 938-946 Protein denotes SerpinB2
T5302 694-701 Protein denotes Bsu36 I
T5301 686-692 Protein denotes BstX I
T5300 679-684 Protein denotes Apa I
T5299 672-677 Protein denotes Sfi I
T5298 632-638 Protein denotes EcoR I
T5297 463-491 Protein denotes SerpinB2 luciferase reporter
T5296 855-868 Protein denotes T4 DNA ligase
T5295 794-811 Protein denotes T4 DNA polymerase
T5294 722-727 Protein denotes Apo I
T5293 710-717 Protein denotes Hae III
T5292 703-708 Protein denotes Pac I
T5291 370-378 Protein denotes SerpinB2
T5290 152-160 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T5262 938-946 Protein denotes SerpinB2
T5261 694-701 Protein denotes Bsu36 I
T5260 686-692 Protein denotes BstX I
T5259 679-684 Protein denotes Apa I
T5258 672-677 Protein denotes Sfi I
T5257 632-638 Protein denotes EcoR I
T5256 463-491 Protein denotes SerpinB2 luciferase reporter
T5255 855-868 Protein denotes T4 DNA ligase
T5254 794-811 Protein denotes T4 DNA polymerase
T5253 722-727 Protein denotes Apo I
T5252 710-717 Protein denotes Hae III
T5251 703-708 Protein denotes Pac I
T5250 370-378 Protein denotes SerpinB2
T5249 152-160 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T5482 794-817 Protein denotes T4 DNA polymerase (NEB)
T5481 686-692 Protein denotes BstX I
T5480 722-727 Protein denotes Apo I
T5479 463-502 Protein denotes SerpinB2 luciferase reporter constructs
T5478 528-531 Protein denotes pGL
T5477 927-963 Entity denotes the murine SerpinB2 promoter regions
T5476 412-416 Protein denotes GLmP
T5472 632-638 Protein denotes EcoR I
T5468 126-129 Protein denotes PCR
T5467 256-271 Protein denotes Basic (Promega)
T5466 504-505 Entity denotes p
T5464 299-305 Protein denotes EcoR I
T5463 517-521 Protein denotes GLmP
T5462 710-717 Protein denotes Hae III
T5456 411-443 Entity denotes pGLmP-3261 to produce pGLmP-4480
T5455 552-553 Entity denotes p
T5451 284-288 Protein denotes GLmP
T5450 36-60 Entity denotes a Kpn I restriction site
T5449 694-701 Protein denotes Bsu36 I
T5446 563-568 Protein denotes pGLmP
T5445 366-407 Entity denotes the SerpinB2 promoter EcoR I site (−3261)
T5444 434-438 Protein denotes GLmP
T5443 152-160 Protein denotes SerpinB2
T5440 1089-1093 Protein denotes pGL3
T5439 366-407 Entity denotes the SerpinB2 promoter EcoR I site (−3261)
T5437 1033-1058 Protein denotes Basic to produce pGLmP-87
T5435 433-443 Entity denotes pGLmP-4480
T5434 516-517 Entity denotes p
T5433 388-394 Protein denotes EcoR I
T5431 89-94 Protein denotes Xho I
T5430 855-857 Entity denotes T4
T5427 4-7 Protein denotes PCR
T5425 616-621 Protein denotes pGLmP
T5424 370-378 Protein denotes SerpinB2
T5422 672-677 Protein denotes Sfi I
T5421 1089-1109 Protein denotes pGL3 Basic (Promega)
T5420 855-868 Protein denotes T4 DNA ligase
T5417 874-877 Protein denotes PCR
T5416 938-946 Protein denotes SerpinB2
T5414 664-678 Protein denotes enzyme (Sfi I,
T5413 553-557 Protein denotes GLmP
T5411 703-708 Protein denotes Pac I
T5407 148-184 Entity denotes the SerpinB2 promoter (−3261 to +92)
T5405 283-293 Entity denotes pGLmP-3261
T5403 505-509 Protein denotes GLmP
T5401 577-582 Protein denotes pGLmP
T5399 463-471 Protein denotes SerpinB2
T5397 632-727 Protein denotes EcoR I and a second restriction enzyme (Sfi I, Apa I, BstX I, Bsu36 I, Pac I, Hae III and Apo I
T5395 794-796 Entity denotes T4
T5393 532-545 Protein denotes P-1686, pGLmP
T5390 813-816 Protein denotes NEB
R3841 T5407 T5443 partOf the SerpinB2 promoter (−3261 to +92),SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T5329 1042-1049 Gene_expression denotes produce
T5328 1028-1032 Protein denotes pGL3
T5327 984-995 Protein denotes Kpn I/Xho I
T5326 855-868 Protein denotes T4 DNA ligase
T5325 813-816 Protein denotes NEB
T5324 794-811 Protein denotes T4 DNA polymerase
T5323 722-727 Protein denotes Apo I
T5322 710-717 Protein denotes Hae III
T5321 703-708 Protein denotes Pac I
T5320 694-701 Protein denotes Bsu36 I
T5319 686-692 Protein denotes BstX I
T5318 679-684 Protein denotes Apa I
T5317 672-677 Protein denotes Sfi I
T5316 632-638 Protein denotes EcoR I
T5315 456-491 Protein denotes murine SerpinB2 luciferase reporter
T5314 425-432 Gene_expression denotes produce
T5313 299-305 Protein denotes EcoR I
T5312 251-255 Protein denotes pGL3
T5311 207-218 Protein denotes Kpn I/Xho I
T5310 38-43 Protein denotes Kpn I
R3837 T5313 T5314 themeOf EcoR I,produce
R3838 T5328 T5329 themeOf pGL3,produce

testone

Id Subject Object Predicate Lexical cue
T4698 1042-1049 Gene_expression denotes produce
T4697 425-432 Gene_expression denotes produce
T4696 275-282 Gene_expression denotes produce
T4690 938-946 Protein denotes SerpinB2
T4689 855-868 Protein denotes T4 DNA ligase
T4688 794-811 Protein denotes T4 DNA polymerase
T4687 722-727 Protein denotes Apo I
T4686 710-717 Protein denotes Hae III
T4685 703-708 Protein denotes Pac I
T4684 694-701 Protein denotes Bsu36 I
T4683 686-692 Protein denotes BstX I
T4682 679-684 Protein denotes Apa I
T4681 672-677 Protein denotes Sfi I
T4680 632-638 Protein denotes EcoR I
T4679 463-491 Protein denotes SerpinB2 luciferase reporter
T4678 370-378 Protein denotes SerpinB2
T4677 152-160 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T4735 938-946 Protein denotes SerpinB2
T4734 855-868 Protein denotes T4 DNA ligase
T4733 794-811 Protein denotes T4 DNA polymerase
T4732 722-727 Protein denotes Apo I
T4731 710-717 Protein denotes Hae III
T4730 703-708 Protein denotes Pac I
T4729 694-701 Protein denotes Bsu36 I
T4728 686-692 Protein denotes BstX I
T4727 679-684 Protein denotes Apa I
T4726 672-677 Protein denotes Sfi I
T4725 632-638 Protein denotes EcoR I
T4724 463-491 Protein denotes SerpinB2 luciferase reporter
T4723 425-432 Gene_expression denotes produce
T4722 370-378 Protein denotes SerpinB2
T4721 275-282 Gene_expression denotes produce
T4720 152-160 Protein denotes SerpinB2
T4713 938-946 Protein denotes SerpinB2
T4712 855-868 Protein denotes T4 DNA ligase
T4711 794-811 Protein denotes T4 DNA polymerase
T4710 722-727 Protein denotes Apo I
T4709 710-717 Protein denotes Hae III
T4708 703-708 Protein denotes Pac I
T4707 694-701 Protein denotes Bsu36 I
T4706 686-692 Protein denotes BstX I
T4705 679-684 Protein denotes Apa I
T4704 672-677 Protein denotes Sfi I
T4703 632-638 Protein denotes EcoR I
T4702 463-491 Protein denotes SerpinB2 luciferase reporter
T4701 370-378 Protein denotes SerpinB2
T4700 152-160 Protein denotes SerpinB2