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PMC:3589482 / 8267-9039 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4651 771-772 . denotes .
T4650 770-771 -RRB- denotes )
T4649 766-770 NNP denotes Inc.
T4648 764-765 , denotes ,
T4647 754-764 NNP denotes Technology
T4646 744-753 NNP denotes Signaling
T4645 739-743 NNP denotes Cell
T4644 738-739 -LRB- denotes (
T4643 730-737 NN denotes tubulin
T4551 217-218 -RRB- denotes )
T4550 207-217 NNP denotes Invitrogen
T4549 206-207 -LRB- denotes (
T4548 201-205 NNS denotes gels
T4547 194-200 NNP denotes NuPAGE
T4546 185-193 NNP denotes Bis-Tris
T4545 183-184 NN denotes %
T4544 181-183 CD denotes 12
T4543 179-180 CD denotes 4
T4542 176-178 IN denotes on
T4541 166-175 VBN denotes separated
T4540 161-165 VBD denotes were
T4539 152-160 NNS denotes proteins
T4538 150-151 , denotes ,
T4537 149-150 -RRB- denotes )
T4536 146-149 NNP denotes SDS
T4535 144-145 NN denotes %
T4534 141-144 CD denotes 0.1
T4533 139-140 , denotes ,
T4532 127-139 NN denotes deoxycholate
T4531 125-126 NN denotes %
T4530 122-125 CD denotes 0.5
T4529 120-121 , denotes ,
T4528 115-120 NN denotes NP-40
T4527 113-114 NN denotes %
T4526 110-113 CD denotes 0.5
T4525 108-109 , denotes ,
T4524 103-108 NNP denotes X-100
T4523 96-102 NNP denotes Triton
T4522 95-96 NN denotes %
T4521 94-95 CD denotes 1
T4520 92-93 , denotes ,
T4519 88-92 NNP denotes NaCl
T4518 85-87 NNP denotes mM
T4517 81-84 CD denotes 150
T4516 79-80 , denotes ,
T4515 75-79 NNP denotes Tris
T4514 72-74 NNP denotes mM
T4513 69-71 CD denotes 10
T4512 68-69 -LRB- denotes (
T4511 61-67 NN denotes buffer
T4510 56-60 NNP denotes RIPA
T4509 53-55 IN denotes in
T4508 44-52 VBN denotes prepared
T4642 728-729 FW denotes β
T4641 727-728 FW denotes /
T4640 726-727 VB denotes α
T4639 722-725 CC denotes and
T4638 720-721 -RRB- denotes )
T4637 715-720 NNP denotes GAPDH
T4636 714-715 -LRB- denotes (
T4635 700-713 NN denotes dehydrogenase
T4634 673-699 JJ denotes glyceraldehyde-3-phosphate
T4633 671-672 , denotes ,
T4632 670-671 -RRB- denotes )
T4631 655-670 NNPS denotes Biotechnologies
T4630 650-654 NNP denotes Cruz
T4629 644-649 NNP denotes Santa
T4628 643-644 -LRB- denotes (
T4627 641-642 -RRB- denotes )
T4626 635-641 JJ denotes sc-150
T4625 634-635 -LRB- denotes (
T4624 632-633 NN denotes β
T4623 631-632 : denotes -
T4622 626-631 SYM denotes C/EBP
T4621 624-625 : denotes :
T4620 617-624 VBP denotes include
T4619 610-616 NNS denotes assays
T4618 605-609 NN denotes blot
T4617 597-604 JJ denotes western
T4616 593-596 IN denotes for
T4615 588-592 VBN denotes used
T4614 577-587 NNS denotes antibodies
T4613 571-576 JJ denotes Other
T4612 569-570 . denotes .
T4611 568-569 NNP denotes ]
T4610 566-568 CD denotes 35
T4609 565-566 NNP denotes [
T4608 562-564 IN denotes in
T4607 559-561 IN denotes as
T4606 554-558 NNS denotes coli
T4605 551-553 NNP denotes E.
T4604 548-550 IN denotes in
T4603 539-547 VBN denotes produced
T4602 531-538 NN denotes protein
T4601 524-530 NN denotes fusion
T4600 515-523 NNP denotes SerpinB2
T4599 504-514 NNP denotes GST-murine
T4598 492-503 JJ denotes recombinant
T4597 483-491 JJ denotes purified
T4596 481-482 DT denotes a
T4595 476-480 IN denotes with
T4594 463-475 NN denotes immunization
T4593 457-462 IN denotes after
T4592 448-456 VBN denotes prepared
T4591 443-447 VBD denotes were
T4590 432-442 NNS denotes antibodies
T4589 423-431 NNP denotes SerpinB2
T4588 412-422 JJ denotes anti-mouse
T4587 405-411 NN denotes rabbit
T4586 396-404 VBD denotes purified
T4585 387-395 NNP denotes Affinity
T4584 385-386 . denotes .
T4583 376-385 JJ denotes overnight
T4582 365-375 NNS denotes antibodies
T4581 357-364 JJ denotes primary
T4580 352-356 IN denotes with
T4579 342-351 VBN denotes incubated
T4578 338-341 CC denotes and
T4577 336-337 , denotes ,
T4576 335-336 -RRB- denotes )
T4575 327-335 NN denotes Tween-20
T4574 325-326 NN denotes %
T4573 322-325 CD denotes 0.1
T4572 320-321 , denotes ,
T4571 317-320 NNP denotes PBS
T4570 314-316 NNP denotes 1X
T4569 313-314 -LRB- denotes (
T4568 307-312 NNP denotes PBS-T
T4567 304-306 IN denotes in
T4566 299-303 NN denotes milk
T4565 297-298 NN denotes %
T4564 296-297 CD denotes 5
T4563 291-295 IN denotes with
T4562 283-290 VBN denotes blocked
T4561 270-282 RB denotes subsequently
T4560 265-269 VBD denotes were
T4559 255-264 NNS denotes Membranes
T4558 253-254 . denotes .
T4557 244-253 NNS denotes membranes
T4556 239-243 NNP denotes PVDF
T4555 236-238 TO denotes to
T4554 224-235 VBD denotes transferred
T4553 220-223 CC denotes and
T4552 218-219 , denotes ,
T4507 39-43 VBD denotes were
T4506 31-38 NNS denotes lysates
T4505 26-30 NN denotes cell
T4504 20-25 NNP denotes Whole
T4503 13-19 NNP denotes Assays
T4502 8-12 NNP denotes Blot
T4501 0-7 JJ denotes Western
R3322 T4532 T4528 appos deoxycholate,NP-40
R3323 T4533 T4532 punct ",",deoxycholate
R3324 T4534 T4535 nummod 0.1,%
R3325 T4535 T4536 compound %,SDS
R3326 T4536 T4532 appos SDS,deoxycholate
R3327 T4537 T4536 punct ),SDS
R3328 T4538 T4541 punct ",",separated
R3329 T4539 T4541 nsubjpass proteins,separated
R3330 T4540 T4541 auxpass were,separated
R3331 T4541 T4541 ROOT separated,separated
R3332 T4542 T4541 prep on,separated
R3333 T4543 T4542 pobj 4,on
R3334 T4544 T4545 nummod 12,%
R3335 T4545 T4548 compound %,gels
R3336 T4546 T4547 compound Bis-Tris,NuPAGE
R3337 T4547 T4548 compound NuPAGE,gels
R3338 T4548 T4541 appos gels,separated
R3339 T4549 T4550 punct (,Invitrogen
R3340 T4550 T4548 appos Invitrogen,gels
R3341 T4551 T4548 punct ),gels
R3342 T4552 T4541 punct ",",separated
R3343 T4553 T4541 cc and,separated
R3344 T4554 T4541 conj transferred,separated
R3345 T4555 T4554 prep to,transferred
R3346 T4556 T4557 compound PVDF,membranes
R3347 T4557 T4555 pobj membranes,to
R3348 T4558 T4541 punct .,separated
R3349 T4559 T4562 nsubjpass Membranes,blocked
R3350 T4560 T4562 auxpass were,blocked
R3351 T4561 T4562 advmod subsequently,blocked
R3352 T4562 T4562 ROOT blocked,blocked
R3353 T4563 T4562 prep with,blocked
R3354 T4564 T4565 nummod 5,%
R3355 T4565 T4566 compound %,milk
R3356 T4566 T4563 pobj milk,with
R3357 T4567 T4566 prep in,milk
R3358 T4568 T4567 pobj PBS-T,in
R3359 T4569 T4568 punct (,PBS-T
R3360 T4570 T4571 compound 1X,PBS
R3361 T4571 T4568 appos PBS,PBS-T
R3362 T4572 T4568 punct ",",PBS-T
R3363 T4573 T4574 nummod 0.1,%
R3364 T4574 T4575 compound %,Tween-20
R3365 T4575 T4568 appos Tween-20,PBS-T
R3366 T4576 T4568 punct ),PBS-T
R3367 T4577 T4562 punct ",",blocked
R3368 T4578 T4562 cc and,blocked
R3369 T4579 T4562 conj incubated,blocked
R3370 T4580 T4579 prep with,incubated
R3371 T4581 T4582 amod primary,antibodies
R3372 T4582 T4580 pobj antibodies,with
R3373 T4583 T4579 advmod overnight,incubated
R3374 T4584 T4562 punct .,blocked
R3375 T4585 T4586 nsubj Affinity,purified
R3376 T4586 T4586 ROOT purified,purified
R3377 T4587 T4590 compound rabbit,antibodies
R3378 T4588 T4589 compound anti-mouse,SerpinB2
R3379 T4589 T4590 compound SerpinB2,antibodies
R3380 T4590 T4592 nsubjpass antibodies,prepared
R3381 T4591 T4592 auxpass were,prepared
R3382 T4592 T4586 ccomp prepared,purified
R3383 T4593 T4592 prep after,prepared
R3384 T4594 T4593 pobj immunization,after
R3385 T4595 T4594 prep with,immunization
R3386 T4596 T4602 det a,protein
R3387 T4597 T4602 amod purified,protein
R3388 T4598 T4602 amod recombinant,protein
R3389 T4599 T4600 compound GST-murine,SerpinB2
R3390 T4600 T4602 compound SerpinB2,protein
R3391 T4601 T4602 compound fusion,protein
R3392 T4602 T4595 pobj protein,with
R3393 T4603 T4602 acl produced,protein
R3394 T4604 T4603 prep in,produced
R3395 T4605 T4606 compound E.,coli
R3396 T4606 T4604 pobj coli,in
R3397 T4607 T4603 prep as,produced
R3398 T4608 T4607 prep in,as
R3399 T4609 T4611 nmod [,]
R3400 T4610 T4611 nummod 35,]
R3401 T4611 T4608 pobj ],in
R3402 T4612 T4586 punct .,purified
R3403 T4613 T4614 amod Other,antibodies
R3404 T4614 T4620 nsubj antibodies,include
R3405 T4615 T4614 acl used,antibodies
R3406 T4616 T4615 prep for,used
R3407 T4617 T4619 amod western,assays
R3408 T4618 T4619 compound blot,assays
R3409 T4619 T4616 pobj assays,for
R3410 T4620 T4620 ROOT include,include
R3411 T4621 T4620 punct :,include
R3412 T4622 T4624 punct C/EBP,β
R3413 T4623 T4624 punct -,β
R3414 T4624 T4620 dobj β,include
R3415 T4625 T4624 punct (,β
R3416 T4626 T4624 appos sc-150,β
R3417 T4627 T4624 punct ),β
R3418 T4628 T4631 punct (,Biotechnologies
R3419 T4629 T4631 compound Santa,Biotechnologies
R3420 T4630 T4631 compound Cruz,Biotechnologies
R3421 T4631 T4624 parataxis Biotechnologies,β
R3422 T4632 T4631 punct ),Biotechnologies
R3423 T4633 T4631 punct ",",Biotechnologies
R3424 T4634 T4635 amod glyceraldehyde-3-phosphate,dehydrogenase
R3425 T4635 T4631 appos dehydrogenase,Biotechnologies
R3426 T4636 T4637 punct (,GAPDH
R3427 T4637 T4635 appos GAPDH,dehydrogenase
R3428 T4638 T4637 punct ),GAPDH
R3429 T4639 T4635 cc and,dehydrogenase
R3430 T4640 T4643 amod α,tubulin
R3431 T4641 T4643 compound /,tubulin
R3432 T4642 T4643 compound β,tubulin
R3433 T4643 T4635 conj tubulin,dehydrogenase
R3434 T4644 T4649 punct (,Inc.
R3435 T4645 T4649 nmod Cell,Inc.
R3436 T4646 T4649 nmod Signaling,Inc.
R3437 T4647 T4646 pobj Technology,Signaling
R3438 T4648 T4649 punct ",",Inc.
R3439 T4649 T4643 parataxis Inc.,tubulin
R3440 T4650 T4649 punct ),Inc.
R3441 T4651 T4620 punct .,include
R3291 T4501 T4506 amod Western,lysates
R3292 T4502 T4506 compound Blot,lysates
R3293 T4503 T4506 compound Assays,lysates
R3294 T4504 T4506 compound Whole,lysates
R3295 T4505 T4506 compound cell,lysates
R3296 T4506 T4508 nsubjpass lysates,prepared
R3297 T4507 T4508 auxpass were,prepared
R3298 T4508 T4541 ccomp prepared,separated
R3299 T4509 T4508 prep in,prepared
R3300 T4510 T4511 compound RIPA,buffer
R3301 T4511 T4509 pobj buffer,in
R3302 T4512 T4515 punct (,Tris
R3303 T4513 T4515 nummod 10,Tris
R3304 T4514 T4515 compound mM,Tris
R3305 T4515 T4541 nsubjpass Tris,separated
R3306 T4516 T4515 punct ",",Tris
R3307 T4517 T4519 nummod 150,NaCl
R3308 T4518 T4519 compound mM,NaCl
R3309 T4519 T4515 appos NaCl,Tris
R3310 T4520 T4519 punct ",",NaCl
R3311 T4521 T4522 nummod 1,%
R3312 T4522 T4524 compound %,X-100
R3313 T4523 T4524 compound Triton,X-100
R3314 T4524 T4519 conj X-100,NaCl
R3315 T4525 T4524 punct ",",X-100
R3316 T4526 T4527 nummod 0.5,%
R3317 T4527 T4528 compound %,NP-40
R3318 T4528 T4524 appos NP-40,X-100
R3319 T4529 T4528 punct ",",NP-40
R3320 T4530 T4531 nummod 0.5,%
R3321 T4531 T4532 compound %,deoxycholate

2_test

Id Subject Object Predicate Lexical cue
23472114-9892694-87899173 566-568 9892694 denotes 35
T16742 566-568 9892694 denotes 35

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4435 770-771 -RRB- denotes )
T4434 766-770 NNP denotes Inc.
T4433 764-765 -COMMA- denotes ,
T4432 754-764 NNP denotes Technology
T4431 744-753 NNP denotes Signaling
T4430 739-743 NNP denotes Cell
T4429 738-739 -LRB- denotes (
T4428 730-737 NN denotes tubulin
T4427 726-729 NN denotes α/β
T4426 722-725 CC denotes and
T4425 720-721 -RRB- denotes )
T4424 715-720 NN denotes GAPDH
T4423 714-715 -LRB- denotes (
T4422 700-713 NN denotes dehydrogenase
T4421 673-699 NN denotes glyceraldehyde-3-phosphate
T4420 671-672 -COMMA- denotes ,
T4419 670-671 -RRB- denotes )
T4418 655-670 NNP denotes Biotechnologies
T4417 650-654 NNP denotes Cruz
T4416 644-649 NNP denotes Santa
T4415 643-644 -LRB- denotes (
T4414 641-642 -RRB- denotes )
T4413 635-641 NN denotes sc-150
T4412 634-635 -LRB- denotes (
T4411 626-633 NN denotes C/EBP-β
T4410 624-625 -COLON- denotes :
T4409 617-624 VB denotes include
T4408 610-616 NN denotes assays
T4407 605-609 NN denotes blot
T4406 597-604 JJ denotes western
T4405 593-596 IN denotes for
T4404 588-592 VB denotes used
T4403 577-587 NN denotes antibodies
T4402 571-576 JJ denotes Other
T4401 568-569 -RRB- denotes ]
T4400 566-568 CD denotes 35
T4399 565-566 -LRB- denotes [
T4398 562-564 IN denotes in
T4397 559-561 IN denotes as
T4396 554-558 FW denotes coli
T4395 551-553 FW denotes E.
T4394 548-550 IN denotes in
T4393 539-547 VB denotes produced
T4392 531-538 NN denotes protein
T4391 524-530 NN denotes fusion
T4390 515-523 NN denotes SerpinB2
T4389 504-514 NN denotes GST-murine
T4388 492-503 JJ denotes recombinant
T4387 483-491 VB denotes purified
T4386 481-482 DT denotes a
T4385 476-480 IN denotes with
T4384 463-475 NN denotes immunization
T4383 457-462 IN denotes after
T4382 448-456 VB denotes prepared
T4381 443-447 VB denotes were
T4380 432-442 NN denotes antibodies
T4379 423-431 NN denotes SerpinB2
T4378 412-422 JJ denotes anti-mouse
T4377 405-411 NN denotes rabbit
T4376 396-404 VB denotes purified
T4375 387-395 NN denotes Affinity
T4374 376-385 RB denotes overnight
T4373 365-375 NN denotes antibodies
T4372 357-364 JJ denotes primary
T4371 352-356 IN denotes with
T4370 342-351 VB denotes incubated
T4369 338-341 CC denotes and
T4368 336-337 -COMMA- denotes ,
T4367 335-336 -RRB- denotes )
T4366 327-335 CD denotes Tween-20
T4365 325-326 NN denotes %
T4364 322-325 CD denotes 0.1
T4363 320-321 -COMMA- denotes ,
T4362 317-320 NNP denotes PBS
T4361 314-316 NN denotes 1X
T4360 313-314 -LRB- denotes (
T4359 307-312 NN denotes PBS-T
T4358 304-306 IN denotes in
T4357 299-303 NN denotes milk
T4356 297-298 NN denotes %
T4355 296-297 CD denotes 5
T4354 291-295 IN denotes with
T4353 283-290 VB denotes blocked
T4352 270-282 RB denotes subsequently
T4351 265-269 VB denotes were
T4350 255-264 NN denotes Membranes
T4349 244-253 NN denotes membranes
T4348 239-243 NN denotes PVDF
T4347 236-238 TO denotes to
T4346 224-235 VB denotes transferred
T4345 220-223 CC denotes and
T4344 218-219 -COMMA- denotes ,
T4343 217-218 -RRB- denotes )
T4342 207-217 NN denotes Invitrogen
T4341 206-207 -LRB- denotes (
T4340 201-205 NN denotes gels
T4339 194-200 NN denotes NuPAGE
T4338 185-193 JJ denotes Bis-Tris
T4337 183-184 NN denotes %
T4336 179-183 CD denotes 4–12
T4310 81-84 CD denotes 150
T4309 79-80 -COMMA- denotes ,
T4308 75-79 NNP denotes Tris
T4307 72-74 NN denotes mM
T4306 69-71 CD denotes 10
T4305 68-69 -LRB- denotes (
T4304 61-67 NN denotes buffer
T4303 56-60 NN denotes RIPA
T4302 53-55 IN denotes in
T4301 44-52 VB denotes prepared
T4300 39-43 VB denotes were
T4299 31-38 NN denotes lysates
T4298 26-30 NN denotes cell
T4297 20-25 JJ denotes Whole
T4296 13-19 NN denotes Assays
T4295 8-12 NNP denotes Blot
T4294 0-7 NNP denotes Western
T4335 176-178 IN denotes on
T4334 166-175 VB denotes separated
T4333 161-165 VB denotes were
T4332 152-160 NN denotes proteins
T4331 150-151 -COMMA- denotes ,
T4330 149-150 -RRB- denotes )
T4329 146-149 NN denotes SDS
T4328 144-145 NN denotes %
T4327 141-144 CD denotes 0.1
T4326 139-140 -COMMA- denotes ,
T4325 127-139 NN denotes deoxycholate
T4324 125-126 NN denotes %
T4323 122-125 CD denotes 0.5
T4322 120-121 -COMMA- denotes ,
T4321 115-120 NN denotes NP-40
T4320 113-114 NN denotes %
T4319 110-113 CD denotes 0.5
T4318 108-109 -COMMA- denotes ,
T4317 103-108 NN denotes X-100
T4316 96-102 NN denotes Triton
T4315 95-96 NN denotes %
T4314 94-95 CD denotes 1
T4313 92-93 -COMMA- denotes ,
T4312 88-92 NN denotes NaCl
T4311 85-87 NN denotes mM
R3138 T4295 T4294 arg1Of Blot,Western
R3139 T4296 T4295 arg1Of Assays,Blot
R3140 T4299 T4297 arg1Of lysates,Whole
R3141 T4299 T4298 arg1Of lysates,cell
R3142 T4299 T4300 arg1Of lysates,were
R3143 T4299 T4301 arg2Of lysates,prepared
R3144 T4301 T4300 arg2Of prepared,were
R3145 T4301 T4302 arg1Of prepared,in
R3146 T4301 T4305 arg1Of prepared,(
R3147 T4304 T4302 arg2Of buffer,in
R3148 T4304 T4303 arg1Of buffer,RIPA
R3149 T4308 T4305 arg2Of Tris,(
R3150 T4308 T4306 arg1Of Tris,10
R3151 T4308 T4307 arg1Of Tris,mM
R3152 T4308 T4309 arg1Of Tris,","
R3153 T4308 T4326 arg1Of Tris,","
R3154 T4310 T4311 arg1Of 150,mM
R3155 T4312 T4310 arg1Of NaCl,150
R3156 T4312 T4313 arg1Of NaCl,","
R3157 T4313 T4318 arg1Of ",",","
R3158 T4314 T4315 arg1Of 1,%
R3159 T4317 T4313 arg2Of X-100,","
R3160 T4317 T4314 arg1Of X-100,1
R3161 T4317 T4316 arg1Of X-100,Triton
R3162 T4318 T4322 arg1Of ",",","
R3163 T4319 T4320 arg1Of 0.5,%
R3164 T4321 T4318 arg2Of NP-40,","
R3165 T4321 T4319 arg1Of NP-40,0.5
R3166 T4322 T4309 arg2Of ",",","
R3167 T4323 T4324 arg1Of 0.5,%
R3168 T4325 T4322 arg2Of deoxycholate,","
R3169 T4325 T4323 arg1Of deoxycholate,0.5
R3170 T4327 T4328 arg1Of 0.1,%
R3171 T4329 T4326 arg2Of SDS,","
R3172 T4329 T4327 arg1Of SDS,0.1
R3173 T4330 T4305 arg3Of ),(
R3174 T4332 T4333 arg1Of proteins,were
R3175 T4332 T4334 arg2Of proteins,separated
R3176 T4332 T4346 arg2Of proteins,transferred
R3177 T4334 T4335 arg1Of separated,on
R3178 T4334 T4345 arg1Of separated,and
R3179 T4336 T4337 arg1Of 4–12,%
R3180 T4340 T4335 arg2Of gels,on
R3181 T4340 T4336 arg1Of gels,4–12
R3182 T4340 T4338 arg1Of gels,Bis-Tris
R3183 T4340 T4339 arg1Of gels,NuPAGE
R3184 T4340 T4341 arg1Of gels,(
R3185 T4342 T4341 arg2Of Invitrogen,(
R3186 T4343 T4341 arg3Of ),(
R3187 T4345 T4300 modOf and,were
R3188 T4345 T4331 arg1Of and,","
R3189 T4345 T4333 arg2Of and,were
R3190 T4345 T4344 arg1Of and,","
R3191 T4346 T4345 arg2Of transferred,and
R3192 T4346 T4347 arg1Of transferred,to
R3193 T4349 T4347 arg2Of membranes,to
R3194 T4349 T4348 arg1Of membranes,PVDF
R3195 T4350 T4351 arg1Of Membranes,were
R3196 T4350 T4353 arg2Of Membranes,blocked
R3197 T4350 T4370 arg2Of Membranes,incubated
R3198 T4353 T4354 arg1Of blocked,with
R3199 T4353 T4369 arg1Of blocked,and
R3200 T4355 T4356 arg1Of 5,%
R3201 T4357 T4354 arg2Of milk,with
R3202 T4357 T4355 arg1Of milk,5
R3203 T4357 T4358 arg1Of milk,in
R3204 T4359 T4358 arg2Of PBS-T,in
R3205 T4359 T4360 arg1Of PBS-T,(
R3206 T4362 T4360 arg2Of PBS,(
R3207 T4362 T4361 arg1Of PBS,1X
R3208 T4362 T4363 arg1Of PBS,","
R3209 T4365 T4364 arg1Of %,0.1
R3210 T4366 T4363 arg2Of Tween-20,","
R3211 T4366 T4365 arg1Of Tween-20,%
R3212 T4367 T4360 arg3Of ),(
R3213 T4369 T4351 arg2Of and,were
R3214 T4369 T4352 arg1Of and,subsequently
R3215 T4369 T4368 arg1Of and,","
R3216 T4370 T4369 arg2Of incubated,and
R3217 T4370 T4371 arg1Of incubated,with
R3218 T4370 T4374 arg1Of incubated,overnight
R3219 T4373 T4371 arg2Of antibodies,with
R3220 T4373 T4372 arg1Of antibodies,primary
R3221 T4380 T4375 arg1Of antibodies,Affinity
R3222 T4380 T4376 arg2Of antibodies,purified
R3223 T4380 T4377 arg1Of antibodies,rabbit
R3224 T4380 T4378 arg1Of antibodies,anti-mouse
R3225 T4380 T4379 arg1Of antibodies,SerpinB2
R3226 T4380 T4381 arg1Of antibodies,were
R3227 T4380 T4382 arg2Of antibodies,prepared
R3228 T4382 T4381 arg2Of prepared,were
R3229 T4382 T4383 arg1Of prepared,after
R3230 T4384 T4383 arg2Of immunization,after
R3231 T4384 T4385 arg1Of immunization,with
R3232 T4392 T4385 arg2Of protein,with
R3233 T4392 T4386 arg1Of protein,a
R3234 T4392 T4387 arg2Of protein,purified
R3235 T4392 T4388 arg1Of protein,recombinant
R3236 T4392 T4389 arg1Of protein,GST-murine
R3237 T4392 T4390 arg1Of protein,SerpinB2
R3238 T4392 T4391 arg1Of protein,fusion
R3239 T4392 T4393 arg2Of protein,produced
R3240 T4393 T4394 arg1Of produced,in
R3241 T4393 T4398 arg1Of produced,in
R3242 T4393 T4399 arg1Of produced,[
R3243 T4396 T4394 arg2Of coli,in
R3244 T4396 T4395 arg1Of coli,E.
R3245 T4398 T4397 arg1Of in,as
R3246 T4400 T4399 arg2Of 35,[
R3247 T4401 T4399 arg3Of ],[
R3248 T4403 T4402 arg1Of antibodies,Other
R3249 T4403 T4404 arg2Of antibodies,used
R3250 T4403 T4409 arg1Of antibodies,include
R3251 T4404 T4405 arg1Of used,for
R3252 T4408 T4405 arg2Of assays,for
R3253 T4408 T4406 arg1Of assays,western
R3254 T4408 T4407 arg1Of assays,blot
R3255 T4409 T4410 arg1Of include,:
R3256 T4411 T4412 arg1Of C/EBP-β,(
R3257 T4411 T4415 arg1Of C/EBP-β,(
R3258 T4411 T4420 arg1Of C/EBP-β,","
R3259 T4413 T4412 arg2Of sc-150,(
R3260 T4414 T4412 arg3Of ),(
R3261 T4418 T4415 arg2Of Biotechnologies,(
R3262 T4418 T4416 arg1Of Biotechnologies,Santa
R3263 T4418 T4417 arg1Of Biotechnologies,Cruz
R3264 T4419 T4415 arg3Of ),(
R3265 T4420 T4426 arg1Of ",",and
R3266 T4422 T4420 arg2Of dehydrogenase,","
R3267 T4422 T4421 arg1Of dehydrogenase,glyceraldehyde-3-phosphate
R3268 T4422 T4423 arg1Of dehydrogenase,(
R3269 T4424 T4423 arg2Of GAPDH,(
R3270 T4425 T4423 arg3Of ),(
R3271 T4426 T4409 arg2Of and,include
R3272 T4428 T4426 arg2Of tubulin,and
R3273 T4428 T4427 arg1Of tubulin,α/β
R3274 T4428 T4429 arg1Of tubulin,(
R3275 T4432 T4429 arg2Of Technology,(
R3276 T4432 T4430 arg1Of Technology,Cell
R3277 T4432 T4431 arg1Of Technology,Signaling
R3278 T4432 T4433 arg1Of Technology,","
R3279 T4434 T4433 arg2Of Inc.,","
R3280 T4435 T4429 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4273 715-720 Protein denotes GAPDH
T4272 673-713 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4271 626-633 Protein denotes C/EBP-β
T4270 504-538 Protein denotes GST-murine SerpinB2 fusion protein

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4445 715-720 http://www.uniprot.org/uniprot/P04406 denotes GAPDH
T4444 688-713 http://www.uniprot.org/uniprot/P04406 denotes 3-phosphate dehydrogenase
T4443 626-633 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T4442 515-523 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T4441 423-431 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

UBERON-AE

Id Subject Object Predicate Lexical cue
T4259 299-303 http://purl.obolibrary.org/obo/UBERON_0001913 denotes milk

GO-MF

Id Subject Object Predicate Lexical cue
T4276 577-587 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T4275 432-442 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T4274 365-375 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T4285 577-587 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T4284 432-442 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T4283 365-375 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T4282 577-587 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T4281 432-442 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T4280 365-375 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T4279 255-264 http://purl.obolibrary.org/obo/GO_0016020 denotes Membranes
T4278 244-253 http://purl.obolibrary.org/obo/GO_0016020 denotes membranes
T4277 26-30 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T4264 571-772 Sentence denotes Other antibodies used for western blot assays include: C/EBP-β (sc-150) (Santa Cruz Biotechnologies), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and α/β tubulin (Cell Signaling Technology, Inc.).
T4263 387-570 Sentence denotes Affinity purified rabbit anti-mouse SerpinB2 antibodies were prepared after immunization with a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli as in [35].
T4262 255-386 Sentence denotes Membranes were subsequently blocked with 5% milk in PBS-T (1X PBS, 0.1% Tween-20), and incubated with primary antibodies overnight.
T4261 20-254 Sentence denotes Whole cell lysates were prepared in RIPA buffer (10 mM Tris, 150 mM NaCl, 1%Triton X-100, 0.5% NP-40, 0.5% deoxycholate, 0.1% SDS), proteins were separated on 4–12% Bis-Tris NuPAGE gels (Invitrogen), and transferred to PVDF membranes.
T4260 0-19 Sentence denotes Western Blot Assays
T52 0-19 Sentence denotes Western Blot Assays
T53 20-254 Sentence denotes Whole cell lysates were prepared in RIPA buffer (10 mM Tris, 150 mM NaCl, 1%Triton X-100, 0.5% NP-40, 0.5% deoxycholate, 0.1% SDS), proteins were separated on 4–12% Bis-Tris NuPAGE gels (Invitrogen), and transferred to PVDF membranes.
T54 255-386 Sentence denotes Membranes were subsequently blocked with 5% milk in PBS-T (1X PBS, 0.1% Tween-20), and incubated with primary antibodies overnight.
T55 387-570 Sentence denotes Affinity purified rabbit anti-mouse SerpinB2 antibodies were prepared after immunization with a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli as in [35].
T56 571-772 Sentence denotes Other antibodies used for western blot assays include: C/EBP-β (sc-150) (Santa Cruz Biotechnologies), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and α/β tubulin (Cell Signaling Technology, Inc.).

simple1

Id Subject Object Predicate Lexical cue
T4293 715-720 Protein denotes GAPDH
T4292 673-713 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4291 626-633 Protein denotes C/EBP-β
T4290 504-538 Protein denotes GST-murine SerpinB2 fusion protein

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4440 539-547 Gene_expression denotes produced
T4439 715-720 Protein denotes GAPDH
T4438 673-713 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4437 626-633 Protein denotes C/EBP-β
T4436 504-538 Protein denotes GST-murine SerpinB2 fusion protein
R3281 T4436 T4440 themeOf GST-murine SerpinB2 fusion protein,produced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4460 539-547 Gene_expression denotes produced
T4459 715-720 Protein denotes GAPDH
T4458 673-713 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4457 626-633 Protein denotes C/EBP-β
T4456 504-538 Protein denotes GST-murine SerpinB2 fusion protein
R3285 T4456 T4460 themeOf GST-murine SerpinB2 fusion protein,produced

DLUT931

Id Subject Object Predicate Lexical cue
T4455 539-547 Gene_expression denotes produced
T4454 715-720 Protein denotes GAPDH
T4453 673-713 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4452 626-633 Protein denotes C/EBP-β
T4451 504-538 Protein denotes GST-murine SerpinB2 fusion protein
R3284 T4451 T4455 themeOf GST-murine SerpinB2 fusion protein,produced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4500 481-558 Gene_expression denotes a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli
T4499 81-92 Entity denotes 150 mM NaCl
T4498 715-720 Protein denotes GAPDH
T4497 166-193 Entity denotes separated on 4–12% Bis-Tris
T4496 726-737 Protein denotes α/β tubulin
T4495 141-149 Protein denotes 0.1% SDS
T4494 239-253 Entity denotes PVDF membranes
T4493 122-150 Entity denotes 0.5% deoxycholate, 0.1% SDS)
T4492 739-743 Entity denotes Cell
T4491 673-721 Protein denotes glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
T4490 69-114 Entity denotes 10 mM Tris, 150 mM NaCl, 1%Triton X-100, 0.5%
T4489 597-616 Entity denotes western blot assays
T4488 307-321 Entity denotes PBS-T (1X PBS,
T4487 626-642 Protein denotes C/EBP-β (sc-150)
T4486 239-243 Entity denotes PVDF
T4485 75-93 Entity denotes Tris, 150 mM NaCl,
T4484 481-558 Protein denotes a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli
T4483 255-264 Entity denotes Membranes
T4482 201-218 Entity denotes gels (Invitrogen)
T4481 152-160 Protein denotes proteins
T4480 423-442 Entity denotes SerpinB2 antibodies
T4479 423-431 Protein denotes SerpinB2
T4478 357-375 Entity denotes primary antibodies
T4477 571-616 Entity denotes Other antibodies used for western blot assays
R3290 T4484 T4500 themeOf a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli,a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T4468 726-737 Protein denotes α/β tubulin
T4467 715-720 Protein denotes GAPDH
T4466 673-713 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4465 626-633 Protein denotes C/EBP-β
T4464 539-547 Gene_expression denotes produced
T4463 539-547 Gene_expression denotes produced
T4462 508-538 Protein denotes murine SerpinB2 fusion protein
T4461 504-507 Protein denotes GST
R3286 T4461 T4463 themeOf GST,produced
R3287 T4462 T4464 themeOf murine SerpinB2 fusion protein,produced

testone

Id Subject Object Predicate Lexical cue
T4250 715-720 Protein denotes GAPDH
T4249 673-713 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4248 626-633 Protein denotes C/EBP-β
T4247 504-538 Protein denotes GST-murine SerpinB2 fusion protein
R3134 T4250 T4249 equivalentTo GAPDH,glyceraldehyde-3-phosphate dehydrogenase

test3

Id Subject Object Predicate Lexical cue
T4258 715-720 Protein denotes GAPDH
T4257 673-713 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4256 626-633 Protein denotes C/EBP-β
T4255 504-538 Protein denotes GST-murine SerpinB2 fusion protein
T4254 715-720 Protein denotes GAPDH
T4253 673-713 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4252 626-633 Protein denotes C/EBP-β
T4251 504-538 Protein denotes GST-murine SerpinB2 fusion protein
R3135 T4258 T4257 equivalentTo GAPDH,glyceraldehyde-3-phosphate dehydrogenase